Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 4199068..4199587 Replicon chromosome
Accession NZ_CP027739
Organism Pseudomonas chlororaphis subsp. piscium strain ToZa7

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag C4K30_RS18690 Protein ID WP_097304079.1
Coordinates 4199068..4199349 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag C4K30_RS18695 Protein ID WP_124348673.1
Coordinates 4199339..4199587 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C4K30_RS18660 4194356..4194628 + 273 WP_102678125.1 hypothetical protein -
C4K30_RS18665 4195036..4195224 + 189 Protein_3654 IS4 family transposase -
C4K30_RS18670 4195221..4195322 - 102 Protein_3655 ATP-binding protein -
C4K30_RS18675 4195413..4196204 + 792 WP_053279766.1 methyltransferase domain-containing protein -
C4K30_RS18680 4196713..4197195 + 483 WP_009049637.1 acyl-CoA thioesterase -
C4K30_RS18685 4197252..4198901 + 1650 WP_124373957.1 FMN-binding glutamate synthase family protein -
C4K30_RS18690 4199068..4199349 - 282 WP_097304079.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
C4K30_RS18695 4199339..4199587 - 249 WP_124348673.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
C4K30_RS18700 4199684..4200472 - 789 WP_124373958.1 helix-turn-helix transcriptional regulator -
C4K30_RS18705 4200557..4201555 + 999 WP_124348674.1 bile acid:sodium symporter -
C4K30_RS18710 4201769..4203532 + 1764 WP_124348675.1 hypothetical protein -
C4K30_RS18715 4203605..4204066 + 462 WP_124373959.1 YccF domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-81)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10863.71 Da        Isoelectric Point: 10.6993

>T100106 WP_097304079.1 NZ_CP027739:c4199349-4199068 [Pseudomonas chlororaphis subsp. piscium]
MTYELEFSEKAWKEWQKLGPTLKEQFKKKLQERLVSPHVPADRLSGLGNAYKIKLRTAGYRLVYRVVDEVLVVTVIAVGK
RERGSVYQQARKR

Download         Length: 282 bp

>T100106 NZ_CP027739:c4199349-4199068 [Pseudomonas chlororaphis subsp. piscium]
ATGACTTATGAGCTGGAGTTCTCCGAGAAAGCCTGGAAGGAATGGCAAAAGCTGGGCCCCACGCTGAAAGAGCAATTCAA
GAAGAAGCTGCAGGAACGACTCGTCAGCCCCCATGTCCCGGCCGATCGCCTGAGCGGCTTGGGCAATGCCTACAAAATCA
AACTGCGCACGGCTGGCTACCGCCTGGTGTATCGGGTGGTGGATGAGGTGTTGGTGGTGACGGTCATTGCCGTGGGCAAG
CGGGAGCGGGGGAGTGTCTATCAGCAAGCCAGGAAGCGTTAG

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 8996.39 Da        Isoelectric Point: 4.5488

>AT100106 WP_124348673.1 NZ_CP027739:c4199587-4199339 [Pseudomonas chlororaphis subsp. piscium]
MTHVLLSNVVASISELKKNPMGTVAAGGGSSVAILNRNEPAFYCVPAKEYEAMMERLEDMELLALCRERENDPTIKVSLN
DL

Download         Length: 249 bp

>AT100106 NZ_CP027739:c4199587-4199339 [Pseudomonas chlororaphis subsp. piscium]
ATGACCCATGTCCTTCTGTCCAACGTCGTTGCGAGCATTTCCGAGCTCAAGAAAAACCCCATGGGCACCGTTGCTGCCGG
TGGCGGTTCCTCCGTGGCCATACTCAATCGCAACGAACCGGCGTTTTACTGCGTTCCGGCCAAGGAATACGAAGCCATGA
TGGAGCGCCTGGAGGATATGGAACTGCTCGCCTTGTGCCGTGAGCGAGAGAATGATCCGACCATCAAGGTTTCGCTCAAT
GACTTATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References