Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) vapBC/VapC-StbC
Location 314164..314834 Replicon chromosome
Accession NZ_CP027738
Organism Pseudomonas chlororaphis subsp. piscium strain ChPhzS135

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag C4K31_RS01380 Protein ID WP_009046452.1
Coordinates 314164..314592 (-) Length 143 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID A0A3G7DZE9
Locus tag C4K31_RS01385 Protein ID WP_009046453.1
Coordinates 314589..314834 (-) Length 82 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C4K31_RS01350 309374..309853 - 480 WP_063427781.1 DoxX family protein -
C4K31_RS01355 309910..310650 - 741 WP_063427782.1 SDR family oxidoreductase -
C4K31_RS01360 310780..311670 + 891 WP_025808442.1 LysR family transcriptional regulator -
C4K31_RS01365 311795..311977 + 183 WP_009041685.1 type II toxin-antitoxin system HicA family toxin -
C4K31_RS01370 312007..312408 + 402 WP_025808441.1 type II toxin-antitoxin system HicB family antitoxin -
C4K31_RS01375 312997..314034 + 1038 WP_063427783.1 L-glyceraldehyde 3-phosphate reductase -
C4K31_RS01380 314164..314592 - 429 WP_009046452.1 type II toxin-antitoxin system VapC family toxin Toxin
C4K31_RS01385 314589..314834 - 246 WP_009046453.1 plasmid stabilization protein Antitoxin
C4K31_RS01390 314974..315813 - 840 WP_106696248.1 taurine dioxygenase -
C4K31_RS01395 316051..316890 - 840 WP_063427785.1 taurine ABC transporter permease TauC -
C4K31_RS01400 316887..317681 - 795 WP_063427786.1 taurine ABC transporter ATP-binding subunit -
C4K31_RS01405 317791..318768 - 978 WP_025808435.1 taurine ABC transporter substrate-binding protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(2-124)

Antitoxin


No domain identified.



Sequences


Toxin        


Download         Length: 143 a.a.        Molecular weight: 15867.39 Da        Isoelectric Point: 5.4927

>T100096 WP_009046452.1 NZ_CP027738:c314592-314164 [Pseudomonas chlororaphis subsp. piscium]
MIVLDTNVLSELMRPQPDTAVLLWIEAQPVEDLYISAMTMAEILHGIARLPHGKRKQTLHASALAMFEEDFIDRIVPFGT
QAALYYAHLVSHRERSGQPINLVDAQIAAICRVHDAAIATRNTKDFTDTGLIVINPWLPLEV

Download         Length: 429 bp

>T100096 NZ_CP027738:c314592-314164 [Pseudomonas chlororaphis subsp. piscium]
ATGATAGTACTCGACACAAATGTGTTGTCAGAACTGATGCGCCCTCAACCGGATACGGCGGTATTGCTGTGGATCGAAGC
GCAACCCGTCGAGGACCTCTACATCAGCGCTATGACCATGGCCGAGATTCTCCACGGCATCGCGCGCCTGCCTCACGGCA
AGCGCAAACAGACGCTGCATGCATCGGCGCTGGCCATGTTCGAGGAAGACTTCATCGACCGGATCGTGCCCTTCGGAACC
CAAGCGGCTCTTTACTACGCGCATCTGGTCTCGCATCGCGAAAGATCAGGCCAGCCGATCAATCTGGTGGATGCGCAAAT
TGCAGCGATATGCCGGGTCCACGACGCCGCGATCGCCACTCGTAACACCAAGGATTTCACCGACACCGGGCTGATCGTTA
TCAACCCCTGGCTGCCGCTCGAGGTCTGA

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 9103.27 Da        Isoelectric Point: 6.2314

>AT100096 WP_009046453.1 NZ_CP027738:c314834-314589 [Pseudomonas chlororaphis subsp. piscium]
MASLTIRNLDDHIKERLRIEAAHNGHSMEEEARLILRRALSRTADSQGLGSRIRARFAETGGVELELPERTEPARLVDLG
E

Download         Length: 246 bp

>AT100096 NZ_CP027738:c314834-314589 [Pseudomonas chlororaphis subsp. piscium]
ATGGCCAGCCTTACGATCCGCAATCTGGACGACCACATCAAAGAACGCCTGCGCATCGAGGCCGCTCACAATGGTCATTC
CATGGAAGAAGAAGCCCGATTGATTTTGCGCCGCGCATTGAGCAGGACAGCTGACAGCCAAGGCCTGGGCAGCCGTATCA
GGGCACGCTTTGCCGAGACCGGCGGAGTAGAGTTGGAGCTGCCTGAACGTACCGAACCGGCACGCTTGGTGGACCTGGGC
GAATGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure
AlphaFold DB A0A3G7DZE9

References