Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | vapBC/VapC-StbC |
Location | 314164..314834 | Replicon | chromosome |
Accession | NZ_CP027738 | ||
Organism | Pseudomonas chlororaphis subsp. piscium strain ChPhzS135 |
Toxin (Protein)
Gene name | vapC | Uniprot ID | - |
Locus tag | C4K31_RS01380 | Protein ID | WP_009046452.1 |
Coordinates | 314164..314592 (-) | Length | 143 a.a. |
Antitoxin (Protein)
Gene name | vapB | Uniprot ID | A0A3G7DZE9 |
Locus tag | C4K31_RS01385 | Protein ID | WP_009046453.1 |
Coordinates | 314589..314834 (-) | Length | 82 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
C4K31_RS01350 | 309374..309853 | - | 480 | WP_063427781.1 | DoxX family protein | - |
C4K31_RS01355 | 309910..310650 | - | 741 | WP_063427782.1 | SDR family oxidoreductase | - |
C4K31_RS01360 | 310780..311670 | + | 891 | WP_025808442.1 | LysR family transcriptional regulator | - |
C4K31_RS01365 | 311795..311977 | + | 183 | WP_009041685.1 | type II toxin-antitoxin system HicA family toxin | - |
C4K31_RS01370 | 312007..312408 | + | 402 | WP_025808441.1 | type II toxin-antitoxin system HicB family antitoxin | - |
C4K31_RS01375 | 312997..314034 | + | 1038 | WP_063427783.1 | L-glyceraldehyde 3-phosphate reductase | - |
C4K31_RS01380 | 314164..314592 | - | 429 | WP_009046452.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
C4K31_RS01385 | 314589..314834 | - | 246 | WP_009046453.1 | plasmid stabilization protein | Antitoxin |
C4K31_RS01390 | 314974..315813 | - | 840 | WP_106696248.1 | taurine dioxygenase | - |
C4K31_RS01395 | 316051..316890 | - | 840 | WP_063427785.1 | taurine ABC transporter permease TauC | - |
C4K31_RS01400 | 316887..317681 | - | 795 | WP_063427786.1 | taurine ABC transporter ATP-binding subunit | - |
C4K31_RS01405 | 317791..318768 | - | 978 | WP_025808435.1 | taurine ABC transporter substrate-binding protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 143 a.a. Molecular weight: 15867.39 Da Isoelectric Point: 5.4927
>T100096 WP_009046452.1 NZ_CP027738:c314592-314164 [Pseudomonas chlororaphis subsp. piscium]
MIVLDTNVLSELMRPQPDTAVLLWIEAQPVEDLYISAMTMAEILHGIARLPHGKRKQTLHASALAMFEEDFIDRIVPFGT
QAALYYAHLVSHRERSGQPINLVDAQIAAICRVHDAAIATRNTKDFTDTGLIVINPWLPLEV
MIVLDTNVLSELMRPQPDTAVLLWIEAQPVEDLYISAMTMAEILHGIARLPHGKRKQTLHASALAMFEEDFIDRIVPFGT
QAALYYAHLVSHRERSGQPINLVDAQIAAICRVHDAAIATRNTKDFTDTGLIVINPWLPLEV
Download Length: 429 bp
>T100096 NZ_CP027738:c314592-314164 [Pseudomonas chlororaphis subsp. piscium]
ATGATAGTACTCGACACAAATGTGTTGTCAGAACTGATGCGCCCTCAACCGGATACGGCGGTATTGCTGTGGATCGAAGC
GCAACCCGTCGAGGACCTCTACATCAGCGCTATGACCATGGCCGAGATTCTCCACGGCATCGCGCGCCTGCCTCACGGCA
AGCGCAAACAGACGCTGCATGCATCGGCGCTGGCCATGTTCGAGGAAGACTTCATCGACCGGATCGTGCCCTTCGGAACC
CAAGCGGCTCTTTACTACGCGCATCTGGTCTCGCATCGCGAAAGATCAGGCCAGCCGATCAATCTGGTGGATGCGCAAAT
TGCAGCGATATGCCGGGTCCACGACGCCGCGATCGCCACTCGTAACACCAAGGATTTCACCGACACCGGGCTGATCGTTA
TCAACCCCTGGCTGCCGCTCGAGGTCTGA
ATGATAGTACTCGACACAAATGTGTTGTCAGAACTGATGCGCCCTCAACCGGATACGGCGGTATTGCTGTGGATCGAAGC
GCAACCCGTCGAGGACCTCTACATCAGCGCTATGACCATGGCCGAGATTCTCCACGGCATCGCGCGCCTGCCTCACGGCA
AGCGCAAACAGACGCTGCATGCATCGGCGCTGGCCATGTTCGAGGAAGACTTCATCGACCGGATCGTGCCCTTCGGAACC
CAAGCGGCTCTTTACTACGCGCATCTGGTCTCGCATCGCGAAAGATCAGGCCAGCCGATCAATCTGGTGGATGCGCAAAT
TGCAGCGATATGCCGGGTCCACGACGCCGCGATCGCCACTCGTAACACCAAGGATTTCACCGACACCGGGCTGATCGTTA
TCAACCCCTGGCTGCCGCTCGAGGTCTGA
Antitoxin
Download Length: 82 a.a. Molecular weight: 9103.27 Da Isoelectric Point: 6.2314
>AT100096 WP_009046453.1 NZ_CP027738:c314834-314589 [Pseudomonas chlororaphis subsp. piscium]
MASLTIRNLDDHIKERLRIEAAHNGHSMEEEARLILRRALSRTADSQGLGSRIRARFAETGGVELELPERTEPARLVDLG
E
MASLTIRNLDDHIKERLRIEAAHNGHSMEEEARLILRRALSRTADSQGLGSRIRARFAETGGVELELPERTEPARLVDLG
E
Download Length: 246 bp
>AT100096 NZ_CP027738:c314834-314589 [Pseudomonas chlororaphis subsp. piscium]
ATGGCCAGCCTTACGATCCGCAATCTGGACGACCACATCAAAGAACGCCTGCGCATCGAGGCCGCTCACAATGGTCATTC
CATGGAAGAAGAAGCCCGATTGATTTTGCGCCGCGCATTGAGCAGGACAGCTGACAGCCAAGGCCTGGGCAGCCGTATCA
GGGCACGCTTTGCCGAGACCGGCGGAGTAGAGTTGGAGCTGCCTGAACGTACCGAACCGGCACGCTTGGTGGACCTGGGC
GAATGA
ATGGCCAGCCTTACGATCCGCAATCTGGACGACCACATCAAAGAACGCCTGCGCATCGAGGCCGCTCACAATGGTCATTC
CATGGAAGAAGAAGCCCGATTGATTTTGCGCCGCGCATTGAGCAGGACAGCTGACAGCCAAGGCCTGGGCAGCCGTATCA
GGGCACGCTTTGCCGAGACCGGCGGAGTAGAGTTGGAGCTGCCTGAACGTACCGAACCGGCACGCTTGGTGGACCTGGGC
GAATGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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