MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 131848 bp
Accession: NZ_OW707734 Location: 332704..464551 Organism: Salmonella enterica subsp. enterica serovar Typhi strain BRD948 Replicon: chromosome
Accession: NZ_OW707734 Location: 332704..464551 Organism: Salmonella enterica subsp. enterica serovar Typhi strain BRD948 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBX04_RS01615 | 328503..329804 | + | 1302 | WP_000637594.1 | anaerobic C4-dicarboxylate transporter DcuA | - |
| NBX04_RS01620 | 329925..330272 | + | 348 | WP_000887832.1 | divalent cation tolerance protein CutA | - |
| NBX04_RS01625 | 330248..331951 | + | 1704 | WP_000068881.1 | protein-disulfide reductase DsbD | - |
| NBX04_RS01630 | 331988..332563 | + | 576 | WP_001188506.1 | transcriptional regulator | - |
| NBX04_RS01640 | 332914..334173 | + | 1260 | WP_000954536.1 | Prophage integrase IntS ; Integrase | Integrase |
| NBX04_RS01645 | 334484..335767 | + | 1284 | WP_000975154.1 | SH3 domain-containing protein | - |
| NBX04_RS01650 | 335852..336121 | + | 270 | Protein_321 | integrase | - |
| NBX04_RS01655 | 336748..337530 | - | 783 | WP_000511749.1 | hypothetical protein ; Integrase | Integrase |
| NBX04_RS01660 | 337800..337994 | + | 195 | WP_162009227.1 | hypothetical protein | - |
| NBX04_RS01665 | 338387..338608 | - | 222 | WP_000193665.1 | helix-turn-helix transcriptional regulator | - |
| NBX04_RS01670 | 338605..339066 | - | 462 | WP_000246267.1 | hypothetical protein | - |
| NBX04_RS01675 | 339613..341286 | + | 1674 | WP_010989301.1 | hypothetical protein | - |
| NBX04_RS01680 | 341367..343652 | + | 2286 | WP_010989300.1 | hypothetical protein | - |
| NBX04_RS01685 | 343956..344207 | + | 252 | WP_024131240.1 | hypothetical protein | - |
| NBX04_RS01690 | 344289..344741 | + | 453 | WP_000434168.1 | hypothetical protein | - |
| NBX04_RS01695 | 344921..345409 | - | 489 | WP_000622308.1 | GNAT family N-acetyltransferase | Toxin Detail |
| NBX04_RS01700 | 345406..345699 | - | 294 | WP_001143724.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| NBX04_RS01705 | 346126..347139 | - | 1014 | WP_000449622.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| NBX04_RS01710 | 347303..348892 | - | 1590 | WP_000488995.1 | TraI domain-containing protein | - |
| NBX04_RS01715 | 348876..350387 | - | 1512 | WP_001120833.1 | UvrD-helicase domain-containing protein | - |
| NBX04_RS01720 | 351241..351769 | + | 529 | Protein_335 | Vi polysaccharide biosynthesis regulator TviA | - |
| NBX04_RS01725 | 352014..353291 | + | 1278 | WP_000466893.1 | UDP-N-acetyl-D-glucosamine 6-dehydrogenase | VF |
| NBX04_RS01730 | 353294..354340 | + | 1047 | WP_000127915.1 | UDP-N-acetylglucosamine 4-epimerase | VF |
| NBX04_RS01735 | 354364..356859 | + | 2496 | WP_010989299.1 | hypothetical protein | VF |
| NBX04_RS01740 | 356859..358595 | + | 1737 | WP_000632615.1 | hypothetical protein | VF |
| NBX04_RS01745 | 358640..359707 | + | 1068 | WP_000720235.1 | hypothetical protein | VF |
| NBX04_RS01750 | 359717..360511 | + | 795 | WP_001023498.1 | hypothetical protein | VF |
| NBX04_RS01755 | 360537..361232 | + | 696 | WP_000467404.1 | Polysialic acid transport ATP-binding protein KpsT | VF |
| NBX04_RS01760 | 361255..362559 | + | 1305 | WP_000431675.1 | hypothetical protein | VF |
| NBX04_RS01765 | 362579..364549 | + | 1971 | WP_000052242.1 | hypothetical protein | VF |
| NBX04_RS01770 | 364851..365597 | - | 747 | WP_000354257.1 | class I SAM-dependent methyltransferase | - |
| NBX04_RS01775 | 365597..366487 | - | 891 | WP_001681808.1 | class I SAM-dependent methyltransferase | - |
| NBX04_RS01780 | 366498..366755 | - | 258 | WP_001681810.1 | YjhX family toxin | - |
| NBX04_RS01785 | 367057..367167 | - | 111 | Protein_348 | autoinducer 2 ABC transporter substrate-binding protein | - |
| NBX04_RS01790 | 367402..367746 | + | 345 | Protein_349 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| NBX04_RS01795 | 367862..368887 | - | 1026 | WP_000027757.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| NBX04_RS01800 | 368891..369523 | - | 633 | WP_000052560.1 | helix-turn-helix domain-containing protein | - |
| NBX04_RS01805 | 369640..369882 | + | 243 | WP_000102106.1 | Rha family transcriptional regulator | - |
| NBX04_RS01810 | 369915..370424 | + | 510 | WP_000460852.1 | phage regulatory CII family protein | - |
| NBX04_RS01815 | 370432..370632 | + | 201 | WP_000956167.1 | DUF2724 domain-containing protein | - |
| NBX04_RS01820 | 370596..370937 | + | 342 | WP_000963479.1 | DUF5347 family protein | - |
| NBX04_RS01825 | 371005..371238 | + | 234 | WP_001244240.1 | DUF2732 family protein | - |
| NBX04_RS01830 | 371238..371465 | + | 228 | WP_000785510.1 | TraR/DksA family transcriptional regulator | - |
| NBX04_RS01835 | 371462..372046 | + | 585 | WP_001090717.1 | exonuclease domain-containing protein | - |
| NBX04_RS01840 | 372043..372903 | + | 861 | WP_000104130.1 | DNA adenine methylase | - |
| NBX04_RS01845 | 372894..375302 | + | 2409 | WP_000301193.1 | replication endonuclease | - |
| NBX04_RS01850 | 375470..375658 | + | 189 | WP_001154438.1 | hypothetical protein | - |
| NBX04_RS01855 | 375670..375903 | + | 234 | WP_001217561.1 | DinI family protein | - |
| NBX04_RS01860 | 375999..376217 | + | 219 | WP_000835188.1 | hypothetical protein | - |
| NBX04_RS01865 | 376227..377291 | + | 1065 | WP_000829584.1 | hypothetical protein | - |
| NBX04_RS01870 | 377288..378352 | + | 1065 | WP_000789323.1 | hypothetical protein | - |
| NBX04_RS01875 | 378372..379067 | + | 696 | WP_000080839.1 | hypothetical protein | - |
| NBX04_RS01880 | 379116..380159 | - | 1044 | WP_001681813.1 | phage portal protein | - |
| NBX04_RS01885 | 380159..381925 | - | 1767 | WP_001098453.1 | terminase ATPase subunit family protein | - |
| NBX04_RS01890 | 382068..382901 | + | 834 | WP_000216272.1 | GPO family capsid scaffolding protein | - |
| NBX04_RS01895 | 382918..383982 | + | 1065 | WP_000730751.1 | phage major capsid protein, P2 family | - |
| NBX04_RS01900 | 383986..384636 | + | 651 | WP_000059175.1 | terminase endonuclease subunit | - |
| NBX04_RS01905 | 384730..385194 | + | 465 | WP_000673540.1 | head completion/stabilization protein | - |
| NBX04_RS01910 | 385194..385397 | + | 204 | WP_000868184.1 | tail protein X | - |
| NBX04_RS01915 | 385401..385616 | + | 216 | WP_000171566.1 | HP1 family phage holin | - |
| NBX04_RS01920 | 385597..386106 | + | 510 | WP_001097942.1 | lysozyme | - |
| NBX04_RS01925 | 386111..386488 | + | 378 | WP_000731034.1 | DNZ54_00345 family protein | - |
| NBX04_RS01930 | 386485..386913 | + | 429 | WP_024131238.1 | Rz-like lysis system protein LysB | - |
| NBX04_RS01935 | 386798..387046 | + | 249 | WP_223229656.1 | Rz1-like lysis system protein LysC | - |
| NBX04_RS01940 | 387009..387440 | + | 432 | WP_001039966.1 | phage tail protein | - |
| NBX04_RS01945 | 387433..387879 | + | 447 | WP_000343944.1 | phage virion morphogenesis protein | - |
| NBX04_RS01950 | 387948..388526 | + | 579 | WP_000993749.1 | phage baseplate assembly protein V | - |
| NBX04_RS01955 | 388523..388882 | + | 360 | WP_000177408.1 | GPW/gp25 family protein | - |
| NBX04_RS01960 | 388869..389777 | + | 909 | WP_000268327.1 | baseplate assembly protein | - |
| NBX04_RS01965 | 389770..390375 | + | 606 | WP_001086816.1 | phage tail protein I | - |
| NBX04_RS01970 | 390372..391991 | + | 1620 | WP_000104806.1 | phage tail protein | - |
| NBX04_RS01975 | 391998..392405 | + | 408 | WP_000006337.1 | tail fiber assembly protein | - |
| NBX04_RS01980 | 392603..393325 | - | 723 | WP_000161708.1 | Guanine nucleotide exchange factor SopE | VF |
| NBX04_RS01985 | 393536..393757 | + | 222 | Protein_388 | helix-turn-helix domain-containing protein | - |
| NBX04_RS01990 | 393860..395032 | + | 1173 | WP_000046101.1 | phage tail sheath protein | - |
| NBX04_RS01995 | 395042..395557 | + | 516 | WP_001207653.1 | phage major tail tube protein | - |
| NBX04_RS02000 | 395612..395914 | + | 303 | WP_001280965.1 | phage tail assembly protein | - |
| NBX04_RS02005 | 395929..396048 | + | 120 | WP_000763315.1 | GpE family phage tail protein | - |
| NBX04_RS02010 | 396041..398821 | + | 2781 | WP_001282813.1 | phage tail tape measure protein | - |
| NBX04_RS02015 | 398821..399306 | + | 486 | WP_000980405.1 | phage tail protein | - |
| NBX04_RS02020 | 399303..400403 | + | 1101 | WP_001011750.1 | phage late control D family protein | - |
| NBX04_RS02025 | 400471..400689 | + | 219 | WP_001775272.1 | ogr/Delta-like zinc finger family protein | - |
| NBX04_RS02030 | 400776..401153 | - | 378 | WP_001039750.1 | hypothetical protein | - |
| NBX04_RS02035 | 401286..401372 | + | 87 | Protein_398 | peptidase | - |
| NBX04_RS02040 | 401372..402646 | + | 1275 | WP_000457555.1 | Y-family DNA polymerase | - |
| NBX04_RS02045 | 402778..403047 | + | 270 | WP_001222413.1 | hypothetical protein | - |
| NBX04_RS02050 | 403147..403473 | - | 327 | WP_000911568.1 | DUF3085 domain-containing protein | - |
| NBX04_RS02055 | 403548..404447 | - | 900 | WP_000022217.1 | hypothetical protein | - |
| NBX04_RS02060 | 404521..405429 | - | 909 | WP_000881183.1 | hypothetical protein | - |
| NBX04_RS02065 | 405501..407450 | - | 1950 | WP_001097965.1 | zincin-like metallopeptidase domain-containing protein | - |
| NBX04_RS02070 | 407539..407997 | - | 459 | WP_000115421.1 | hypothetical protein | - |
| NBX04_RS02075 | 408075..408371 | - | 297 | WP_000968700.1 | hypothetical protein | - |
| NBX04_RS02080 | 408368..408820 | - | 453 | WP_000979718.1 | hypothetical protein | - |
| NBX04_RS02085 | 408838..409047 | - | 210 | WP_000018145.1 | hypothetical protein | - |
| NBX04_RS02090 | 409418..409798 | - | 381 | WP_001103837.1 | hypothetical protein | - |
| NBX04_RS02095 | 409894..410196 | - | 303 | WP_001020123.1 | hypothetical protein | - |
| NBX04_RS02100 | 410920..411840 | - | 921 | WP_000907593.1 | hypothetical protein ; Integrase | Integrase |
| NBX04_RS02105 | 413106..413648 | + | 543 | WP_010989295.1 | DUF1062 domain-containing protein | - |
| NBX04_RS02110 | 413859..414500 | - | 642 | WP_000502502.1 | ParB N-terminal domain-containing protein | - |
| NBX04_RS02115 | 414485..415732 | - | 1248 | WP_001283066.1 | phosphoadenosine phosphosulfate reductase | - |
| NBX04_RS02120 | 415971..417476 | - | 1506 | WP_000213770.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| NBX04_RS02125 | 417809..419206 | - | 1398 | WP_014341560.1 | integrating conjugative element protein | - |
| NBX04_RS02130 | 419254..420222 | - | 969 | WP_000838927.1 | TIGR03756 family integrating conjugative element protein | - |
| NBX04_RS02135 | 420219..420611 | - | 393 | WP_000821941.1 | TIGR03757 family integrating conjugative element protein | - |
| NBX04_RS02140 | 420766..421152 | - | 387 | WP_000054770.1 | hypothetical protein | - |
| NBX04_RS02145 | 421307..424023 | - | 2717 | Protein_420 | conjugative transfer ATPase | - |
| NBX04_RS02150 | 424143..424592 | - | 450 | WP_000244536.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| NBX04_RS02155 | 424579..426057 | - | 1479 | WP_001165842.1 | TIGR03752 family integrating conjugative element protein | - |
| NBX04_RS02160 | 426047..426946 | - | 900 | WP_001240640.1 | TIGR03749 family integrating conjugative element protein | - |
| NBX04_RS02165 | 426946..427599 | - | 654 | WP_000086082.1 | TIGR03746 family integrating conjugative element protein | - |
| NBX04_RS02170 | 427596..427970 | - | 375 | WP_000848326.1 | TIGR03750 family conjugal transfer protein | - |
| NBX04_RS02175 | 427980..428345 | - | 366 | WP_223228898.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| NBX04_RS02180 | 428372..428605 | - | 234 | WP_015899494.1 | TIGR03758 family integrating conjugative element protein | - |
| NBX04_RS02185 | 428611..428883 | - | 273 | WP_001686573.1 | RAQPRD family integrative conjugative element protein | - |
| NBX04_RS02190 | 429102..429860 | - | 759 | WP_010989289.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| NBX04_RS02195 | 429857..431947 | - | 2091 | WP_000071290.1 | type IV conjugative transfer system coupling protein TraD | - |
| NBX04_RS02200 | 431967..432536 | - | 570 | WP_000626967.1 | restriction endonuclease | - |
| NBX04_RS02205 | 432546..433046 | - | 501 | WP_000253629.1 | integrating conjugative element protein | - |
| NBX04_RS02210 | 433082..433768 | - | 687 | WP_000013624.1 | hypothetical protein | VF |
| NBX04_RS02215 | 433747..434487 | - | 741 | WP_001768408.1 | TIGR03759 family integrating conjugative element protein | - |
| NBX04_RS02220 | 434506..435420 | - | 915 | WP_000214158.1 | hypothetical protein | - |
| NBX04_RS02225 | 435377..435739 | - | 363 | WP_001149494.1 | hypothetical protein | - |
| NBX04_RS02230 | 435927..436802 | - | 876 | WP_000994659.1 | hypothetical protein | - |
| NBX04_RS02235 | 437014..437481 | - | 468 | WP_000455463.1 | hypothetical protein | - |
| NBX04_RS02240 | 437578..438729 | - | 1152 | WP_000089603.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| NBX04_RS02245 | 439077..440384 | - | 1308 | WP_000744276.1 | hypothetical protein | VF |
| NBX04_RS02250 | 440381..441043 | - | 663 | WP_000218700.1 | hypothetical protein | VF |
| NBX04_RS02255 | 441040..441483 | - | 444 | WP_223228896.1 | hypothetical protein | VF |
| NBX04_RS02260 | 441526..442122 | - | 597 | WP_024131234.1 | hypothetical protein | VF |
| NBX04_RS02265 | 442161..443246 | - | 1086 | WP_000074784.1 | hypothetical protein | VF |
| NBX04_RS02270 | 443243..444958 | - | 1716 | WP_001289222.1 | hypothetical protein | VF |
| NBX04_RS02275 | 444968..445348 | - | 381 | WP_014341558.1 | hypothetical protein | VF |
| NBX04_RS02280 | 445536..446822 | - | 1287 | WP_000763621.1 | hypothetical protein | VF |
| NBX04_RS02285 | 446824..447162 | - | 339 | WP_048657783.1 | Outer membrane lipoprotein BfpB | VF |
| NBX04_RS02290 | 447128..448063 | - | 936 | WP_049783585.1 | hypothetical protein | VF |
| NBX04_RS02295 | 448534..448953 | - | 420 | WP_000539682.1 | hypothetical protein | VF |
| NBX04_RS02300 | 448956..450200 | - | 1245 | WP_001095932.1 | hypothetical protein | VF |
| NBX04_RS02305 | 450365..451315 | - | 951 | Protein_452 | ISNCY family transposase ISPlu22 | VF |
| NBX04_RS02310 | 451381..451917 | - | 537 | WP_000157067.1 | single-stranded DNA-binding protein | - |
| NBX04_RS02315 | 451930..452148 | - | 219 | WP_000958171.1 | hypothetical protein | - |
| NBX04_RS02320 | 452229..452678 | - | 450 | WP_000032521.1 | STY4534 family ICE replication protein | - |
| NBX04_RS02325 | 453346..455340 | - | 1995 | WP_001241572.1 | DNA topoisomerase III | - |
| NBX04_RS02330 | 455451..456227 | - | 777 | WP_001290444.1 | TIGR03761 family integrating conjugative element protein | - |
| NBX04_RS02335 | 456816..458126 | - | 1311 | WP_001194350.1 | STY4528 family pathogenicity island replication protein | - |
| NBX04_RS02340 | 458156..458404 | - | 249 | WP_000377625.1 | hypothetical protein | - |
| NBX04_RS02345 | 458404..458961 | - | 558 | WP_000144322.1 | DUF2857 domain-containing protein | - |
| NBX04_RS02350 | 459046..459768 | - | 723 | WP_001275616.1 | DUF2786 domain-containing protein | - |
| NBX04_RS02355 | 459755..460015 | - | 261 | WP_000838568.1 | hypothetical protein | - |
| NBX04_RS02360 | 460229..462028 | - | 1800 | WP_001029724.1 | ParB family protein | - |
| NBX04_RS02365 | 462021..463385 | - | 1365 | WP_000018529.1 | SPI-7-type island replicative DNA helicase | - |
| NBX04_RS02370 | 463382..464416 | - | 1035 | WP_001195363.1 | hypothetical protein | VF |
| NBX04_RS02375 | 464630..464704 | - | 75 | Protein_466 | helix-turn-helix domain-containing protein | - |
| NBX04_RS02380 | 465084..465161 | + | 78 | Protein_467 | porin family protein | - |
| NBX04_RS02385 | 465261..466013 | + | 753 | WP_001785756.1 | non-specific acid phosphatase | - |
| NBX04_RS02390 | 466254..466745 | - | 492 | WP_000626103.1 | GNAT family N-acetyltransferase | - |
| NBX04_RS02395 | 466742..467035 | - | 294 | WP_001110456.1 | DUF1778 domain-containing protein | - |
| NBX04_RS02400 | 467352..467574 | + | 223 | Protein_471 | hypothetical protein | - |
| NBX04_RS02405 | 467840..468715 | + | 876 | WP_000921674.1 | AraC family transcriptional regulator | - |
| NBX04_RS02410 | 468712..468999 | + | 288 | WP_001269916.1 | transcriptional regulator RtsB | - |
| NBX04_RS02415 | 469022..469238 | + | 217 | Protein_474 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|