MGE detailed information

MGE type: Integrative_Conjugative_Elements        MGE length: 132845 bp
Accession: NZ_OU943338        Location: 4129784..4262628         Organism: Salmonella enterica subsp. enterica serovar Typhi strain MDUST348       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AFF66_RS20420 (SAMEA2158835_04082) 4125583..4126884 + 1302 WP_000637594.1 anaerobic C4-dicarboxylate transporter DcuA -
AFF66_RS20425 (SAMEA2158835_04083) 4127005..4127352 + 348 WP_000887832.1 divalent cation tolerance protein CutA -
AFF66_RS20430 (SAMEA2158835_04084) 4127328..4129031 + 1704 WP_000068881.1 protein-disulfide reductase DsbD -
AFF66_RS20435 (SAMEA2158835_04085) 4129068..4129643 + 576 WP_001188506.1 transcriptional regulator -
AFF66_RS20445 (SAMEA2158835_04087) 4129994..4131253 + 1260 WP_000954536.1 Prophage integrase IntS ; Integrase Integrase
AFF66_RS20450 (SAMEA2158835_04088) 4131564..4132847 + 1284 WP_000975154.1 SH3 domain-containing protein -
AFF66_RS20455 (SAMEA2158835_04089) 4132932..4133201 + 270 Protein_4006 integrase -
AFF66_RS20460 (SAMEA2158835_04090) 4133828..4134610 - 783 WP_000511749.1 hypothetical protein ; Integrase Integrase
AFF66_RS20465 4134880..4135074 + 195 WP_162009227.1 hypothetical protein -
AFF66_RS20470 (SAMEA2158835_04091) 4135467..4135688 - 222 WP_000193665.1 helix-turn-helix transcriptional regulator -
AFF66_RS20475 (SAMEA2158835_04092) 4135685..4136146 - 462 WP_000246267.1 hypothetical protein -
AFF66_RS20480 (SAMEA2158835_04094) 4136693..4138366 + 1674 WP_010989301.1 hypothetical protein -
AFF66_RS20485 (SAMEA2158835_04095) 4138447..4140732 + 2286 WP_010989300.1 hypothetical protein -
AFF66_RS20490 4141036..4141287 + 252 WP_024131240.1 hypothetical protein -
AFF66_RS20495 (SAMEA2158835_04096) 4141369..4141821 + 453 WP_000434168.1 hypothetical protein -
AFF66_RS20500 (SAMEA2158835_04097) 4142001..4142489 - 489 WP_000622308.1 GNAT family N-acetyltransferase Toxin Detail
AFF66_RS20505 (SAMEA2158835_04098) 4142486..4142779 - 294 WP_001143724.1 DUF1778 domain-containing protein Antitoxin Detail
AFF66_RS20510 (SAMEA2158835_04099) 4143206..4144219 - 1014 WP_000449622.1 Tyrosine recombinase XerC ; Integrase Integrase
AFF66_RS20515 (SAMEA2158835_04100) 4144383..4145972 - 1590 WP_000488995.1 TraI domain-containing protein -
AFF66_RS20520 (SAMEA2158835_04101) 4145956..4147467 - 1512 WP_001120833.1 UvrD-helicase domain-containing protein -
AFF66_RS20525 (SAMEA2158835_04103) 4148321..4148860 + 540 WP_001210944.1 Vi polysaccharide biosynthesis regulator TviA -
AFF66_RS20530 (SAMEA2158835_04104) 4149105..4150382 + 1278 WP_000466893.1 UDP-N-acetyl-D-glucosamine 6-dehydrogenase VF
AFF66_RS20535 (SAMEA2158835_04105) 4150385..4151431 + 1047 WP_000127915.1 UDP-N-acetylglucosamine 4-epimerase VF
AFF66_RS20540 (SAMEA2158835_04106) 4151455..4153950 + 2496 WP_072073205.1 hypothetical protein VF
AFF66_RS20545 (SAMEA2158835_04107) 4153950..4155686 + 1737 WP_000632616.1 hypothetical protein VF
AFF66_RS20550 (SAMEA2158835_04108) 4155731..4156798 + 1068 WP_000720235.1 hypothetical protein VF
AFF66_RS20555 (SAMEA2158835_04109) 4156808..4157602 + 795 WP_001023498.1 hypothetical protein VF
AFF66_RS20560 (SAMEA2158835_04110) 4157628..4158323 + 696 WP_000467404.1 Polysialic acid transport ATP-binding protein KpsT VF
AFF66_RS20565 (SAMEA2158835_04111) 4158346..4159650 + 1305 WP_000431675.1 hypothetical protein VF
AFF66_RS20570 (SAMEA2158835_04112) 4159670..4161640 + 1971 WP_000052242.1 hypothetical protein VF
AFF66_RS20575 (SAMEA2158835_04113) 4161942..4162688 - 747 WP_000354257.1 class I SAM-dependent methyltransferase -
AFF66_RS20580 (SAMEA2158835_04114) 4162688..4163578 - 891 WP_001681808.1 class I SAM-dependent methyltransferase -
AFF66_RS20585 (SAMEA2158835_04115) 4163589..4163846 - 258 WP_001681810.1 YjhX family toxin -
AFF66_RS20590 4164148..4164258 - 111 Protein_4033 autoinducer 2 ABC transporter substrate-binding protein -
AFF66_RS20595 (SAMEA2158835_04116) 4164493..4164837 + 345 Protein_4034 translesion error-prone DNA polymerase V autoproteolytic subunit -
AFF66_RS20600 (SAMEA2158835_04117) 4164953..4165978 - 1026 WP_000027757.1 Tyrosine recombinase XerC ; Integrase Integrase
AFF66_RS20605 (SAMEA2158835_04118) 4165982..4166614 - 633 WP_000052560.1 helix-turn-helix domain-containing protein -
AFF66_RS20610 (SAMEA2158835_04119) 4166731..4166973 + 243 WP_000102106.1 Rha family transcriptional regulator -
AFF66_RS20615 (SAMEA2158835_04120) 4167006..4167515 + 510 WP_000460852.1 phage regulatory CII family protein -
AFF66_RS20620 (SAMEA2158835_04121) 4167523..4167723 + 201 WP_000956167.1 DUF2724 domain-containing protein -
AFF66_RS20625 (SAMEA2158835_04122) 4167687..4168028 + 342 WP_000963479.1 DUF5347 family protein -
AFF66_RS20630 (SAMEA2158835_04123) 4168096..4168329 + 234 WP_001244240.1 DUF2732 family protein -
AFF66_RS20635 (SAMEA2158835_04124) 4168329..4168556 + 228 WP_000785510.1 TraR/DksA family transcriptional regulator -
AFF66_RS20640 (SAMEA2158835_04125) 4168553..4169137 + 585 WP_001090717.1 exonuclease domain-containing protein -
AFF66_RS20645 (SAMEA2158835_04126) 4169134..4169994 + 861 WP_000104130.1 DNA adenine methylase -
AFF66_RS20650 (SAMEA2158835_04127) 4169985..4172387 + 2403 WP_001690689.1 replication endonuclease -
AFF66_RS20655 (SAMEA2158835_04128) 4172555..4172743 + 189 WP_001154438.1 hypothetical protein -
AFF66_RS20660 (SAMEA2158835_04129) 4172755..4172988 + 234 WP_001217561.1 DinI family protein -
AFF66_RS20665 4173084..4173302 + 219 WP_000835188.1 hypothetical protein -
AFF66_RS20670 (SAMEA2158835_04130) 4173312..4174376 + 1065 WP_000829584.1 hypothetical protein -
AFF66_RS20675 (SAMEA2158835_04131) 4174373..4175437 + 1065 WP_000789323.1 hypothetical protein -
AFF66_RS20680 (SAMEA2158835_04132) 4175457..4176152 + 696 WP_000080839.1 hypothetical protein -
AFF66_RS20685 (SAMEA2158835_04133) 4176201..4177244 - 1044 WP_001681813.1 phage portal protein -
AFF66_RS20690 (SAMEA2158835_04134) 4177244..4179010 - 1767 WP_001098453.1 terminase ATPase subunit family protein -
AFF66_RS20695 (SAMEA2158835_04135) 4179153..4179986 + 834 WP_000216272.1 GPO family capsid scaffolding protein -
AFF66_RS20700 (SAMEA2158835_04136) 4180003..4181067 + 1065 WP_000730751.1 phage major capsid protein, P2 family -
AFF66_RS20705 (SAMEA2158835_04137) 4181071..4181721 + 651 WP_000059175.1 terminase endonuclease subunit -
AFF66_RS20710 (SAMEA2158835_04138) 4181815..4182279 + 465 WP_000673540.1 head completion/stabilization protein -
AFF66_RS20715 (SAMEA2158835_04139) 4182279..4182482 + 204 WP_000868184.1 tail protein X -
AFF66_RS20720 (SAMEA2158835_04140) 4182486..4182701 + 216 WP_000171566.1 HP1 family phage holin -
AFF66_RS20725 (SAMEA2158835_04141) 4182682..4183191 + 510 WP_001097942.1 lysozyme -
AFF66_RS20730 (SAMEA2158835_04142) 4183196..4183573 + 378 WP_000731034.1 DNZ54_00345 family protein -
AFF66_RS20735 (SAMEA2158835_04143) 4183570..4183998 + 429 WP_024131238.1 Rz-like lysis system protein LysB -
AFF66_RS20740 4183883..4184131 + 249 WP_223229656.1 Rz1-like lysis system protein LysC -
AFF66_RS20745 (SAMEA2158835_04144) 4184094..4184525 + 432 WP_001039961.1 phage tail protein -
AFF66_RS20750 (SAMEA2158835_04145) 4184518..4184964 + 447 WP_048667705.1 phage virion morphogenesis protein -
AFF66_RS20755 (SAMEA2158835_04146) 4185033..4185611 + 579 WP_048667703.1 phage baseplate assembly protein V -
AFF66_RS20760 (SAMEA2158835_04147) 4185608..4185967 + 360 WP_000177408.1 GPW/gp25 family protein -
AFF66_RS20765 (SAMEA2158835_04148) 4185954..4186862 + 909 WP_000268327.1 baseplate assembly protein -
AFF66_RS20770 (SAMEA2158835_04149) 4186855..4187460 + 606 WP_001086816.1 phage tail protein I -
AFF66_RS20775 (SAMEA2158835_04150) 4187457..4189076 + 1620 WP_000104806.1 phage tail protein -
AFF66_RS20780 (SAMEA2158835_04151) 4189083..4189490 + 408 WP_000006337.1 tail fiber assembly protein -
AFF66_RS20785 (SAMEA2158835_04152) 4189688..4190410 - 723 WP_000161708.1 Guanine nucleotide exchange factor SopE VF
AFF66_RS20790 4190621..4190842 + 222 Protein_4073 helix-turn-helix domain-containing protein -
AFF66_RS20795 (SAMEA2158835_04153) 4190945..4192117 + 1173 WP_000046101.1 phage tail sheath protein -
AFF66_RS20800 (SAMEA2158835_04154) 4192127..4192642 + 516 WP_001207653.1 phage major tail tube protein -
AFF66_RS20805 (SAMEA2158835_04155) 4192697..4192999 + 303 WP_001280965.1 phage tail assembly protein -
AFF66_RS20810 4193014..4193133 + 120 WP_000763315.1 GpE family phage tail protein -
AFF66_RS20815 (SAMEA2158835_04156) 4193126..4195906 + 2781 WP_001282813.1 phage tail tape measure protein -
AFF66_RS20820 (SAMEA2158835_04157) 4195906..4196391 + 486 WP_000980405.1 phage tail protein -
AFF66_RS20825 (SAMEA2158835_04158) 4196388..4197488 + 1101 WP_001011750.1 phage late control D family protein -
AFF66_RS20830 (SAMEA2158835_04159) 4197556..4197774 + 219 WP_001775272.1 ogr/Delta-like zinc finger family protein -
AFF66_RS20835 (SAMEA2158835_04160) 4197861..4198238 - 378 WP_001039750.1 hypothetical protein -
AFF66_RS20840 4198372..4198458 + 87 Protein_4083 peptidase -
AFF66_RS20845 (SAMEA2158835_04161) 4198458..4199732 + 1275 WP_000457555.1 Y-family DNA polymerase -
AFF66_RS20850 (SAMEA2158835_04162) 4199864..4200133 + 270 WP_001222413.1 hypothetical protein -
AFF66_RS20855 (SAMEA2158835_04163) 4200233..4200559 - 327 WP_000911568.1 DUF3085 domain-containing protein -
AFF66_RS20860 (SAMEA2158835_04164) 4200634..4201533 - 900 WP_000022217.1 hypothetical protein -
AFF66_RS20865 (SAMEA2158835_04165) 4201607..4202515 - 909 WP_000881183.1 hypothetical protein -
AFF66_RS20870 (SAMEA2158835_04166) 4202587..4204536 - 1950 WP_001097965.1 zincin-like metallopeptidase domain-containing protein -
AFF66_RS20875 (SAMEA2158835_04167) 4204625..4205083 - 459 WP_000115421.1 hypothetical protein -
AFF66_RS20880 (SAMEA2158835_04168) 4205161..4205457 - 297 WP_000968700.1 hypothetical protein -
AFF66_RS20885 (SAMEA2158835_04169) 4205454..4205906 - 453 WP_000979718.1 hypothetical protein -
AFF66_RS20890 (SAMEA2158835_04170) 4205924..4206133 - 210 WP_000018145.1 hypothetical protein -
AFF66_RS20895 (SAMEA2158835_04171) 4206504..4206884 - 381 WP_001103837.1 hypothetical protein -
AFF66_RS20900 (SAMEA2158835_04172) 4206980..4207282 - 303 WP_001020123.1 hypothetical protein -
AFF66_RS20905 (SAMEA2158835_04173) 4208006..4208926 - 921 WP_000907593.1 hypothetical protein ; Integrase Integrase
AFF66_RS20910 (SAMEA2158835_04174) 4210192..4210734 + 543 WP_010989295.1 DUF1062 domain-containing protein -
AFF66_RS20915 (SAMEA2158835_04175) 4210945..4211586 - 642 WP_000502502.1 ParB N-terminal domain-containing protein -
AFF66_RS20920 (SAMEA2158835_04176) 4211571..4212818 - 1248 WP_001283066.1 phosphoadenosine phosphosulfate reductase -
AFF66_RS20925 (SAMEA2158835_04177) 4213106..4213465 + 360 WP_010989293.1 hypothetical protein -
AFF66_RS20930 (SAMEA2158835_04178) 4213689..4214078 + 390 WP_000993574.1 hypothetical protein -
AFF66_RS20935 (SAMEA2158835_04179) 4214114..4215619 - 1506 WP_000213770.1 conjugal transfer protein TraG N-terminal domain-containing protein -
AFF66_RS20940 (SAMEA2158835_04181) 4215952..4217349 - 1398 WP_014341560.1 integrating conjugative element protein -
AFF66_RS20945 (SAMEA2158835_04182) 4217397..4218365 - 969 WP_000838927.1 TIGR03756 family integrating conjugative element protein -
AFF66_RS20950 (SAMEA2158835_04183) 4218362..4218754 - 393 WP_000821941.1 TIGR03757 family integrating conjugative element protein -
AFF66_RS20955 (SAMEA2158835_04184) 4218909..4219295 - 387 WP_000054770.1 hypothetical protein -
AFF66_RS20960 (SAMEA2158835_04185) 4219450..4222166 - 2717 Protein_4107 conjugative transfer ATPase -
AFF66_RS20965 (SAMEA2158835_04187) 4222286..4222735 - 450 WP_000244536.1 TIGR03751 family conjugal transfer lipoprotein -
AFF66_RS20970 (SAMEA2158835_04188) 4222722..4224200 - 1479 WP_001165842.1 TIGR03752 family integrating conjugative element protein -
AFF66_RS20975 (SAMEA2158835_04189) 4224190..4225089 - 900 WP_001240640.1 TIGR03749 family integrating conjugative element protein -
AFF66_RS20980 (SAMEA2158835_04190) 4225089..4225742 - 654 WP_000086082.1 TIGR03746 family integrating conjugative element protein -
AFF66_RS20985 (SAMEA2158835_04191) 4225739..4226113 - 375 WP_000848326.1 TIGR03750 family conjugal transfer protein -
AFF66_RS20990 (SAMEA2158835_04192) 4226123..4226488 - 366 WP_223228898.1 TIGR03745 family integrating conjugative element membrane protein -
AFF66_RS20995 (SAMEA2158835_04193) 4226515..4226748 - 234 WP_015899494.1 TIGR03758 family integrating conjugative element protein -
AFF66_RS21000 (SAMEA2158835_04194) 4226754..4227008 - 255 WP_000252871.1 RAQPRD family integrative conjugative element protein -
AFF66_RS21005 (SAMEA2158835_04195) 4227245..4228003 - 759 WP_010989289.1 TIGR03747 family integrating conjugative element membrane protein -
AFF66_RS21010 (SAMEA2158835_04196) 4228000..4230090 - 2091 WP_000071290.1 type IV conjugative transfer system coupling protein TraD -
AFF66_RS21015 (SAMEA2158835_04197) 4230110..4230679 - 570 WP_000626967.1 restriction endonuclease -
AFF66_RS21020 (SAMEA2158835_04198) 4230689..4231189 - 501 WP_000253629.1 integrating conjugative element protein -
AFF66_RS21025 (SAMEA2158835_04199) 4231225..4231911 - 687 WP_000013624.1 hypothetical protein VF
AFF66_RS21030 (SAMEA2158835_04200) 4231890..4232630 - 741 WP_001768408.1 TIGR03759 family integrating conjugative element protein -
AFF66_RS21035 (SAMEA2158835_04201) 4232649..4233563 - 915 WP_000214158.1 hypothetical protein -
AFF66_RS21040 4233520..4233882 - 363 WP_001149494.1 hypothetical protein -
AFF66_RS21045 (SAMEA2158835_04202) 4234070..4234945 - 876 WP_000994659.1 hypothetical protein -
AFF66_RS21050 (SAMEA2158835_04203) 4235157..4235624 - 468 WP_000455463.1 hypothetical protein -
AFF66_RS21055 (SAMEA2158835_04204) 4235721..4236872 - 1152 WP_000089603.1 Tyrosine recombinase XerC ; Integrase Integrase
AFF66_RS21060 (SAMEA2158835_04206) 4237220..4238527 - 1308 WP_000744276.1 hypothetical protein VF
AFF66_RS21065 (SAMEA2158835_04207) 4238524..4239186 - 663 WP_000218700.1 hypothetical protein VF
AFF66_RS21070 (SAMEA2158835_04208) 4239183..4239626 - 444 WP_223228896.1 hypothetical protein VF
AFF66_RS21075 (SAMEA2158835_04209) 4239669..4240265 - 597 WP_024131234.1 hypothetical protein VF
AFF66_RS21080 (SAMEA2158835_04210) 4240304..4241389 - 1086 WP_000074784.1 hypothetical protein VF
AFF66_RS21085 (SAMEA2158835_04211) 4241386..4243101 - 1716 WP_001289222.1 hypothetical protein VF
AFF66_RS21090 4243111..4243491 - 381 WP_014341558.1 hypothetical protein VF
AFF66_RS21095 (SAMEA2158835_04213) 4243679..4244965 - 1287 WP_000763621.1 hypothetical protein VF
AFF66_RS21100 (SAMEA2158835_04214) 4244967..4245305 - 339 WP_048657783.1 Outer membrane lipoprotein BfpB VF
AFF66_RS21105 (SAMEA2158835_04215) 4245271..4246155 - 885 WP_234828522.1 hypothetical protein VF
AFF66_RS21110 (SAMEA2158835_04216) 4246677..4247096 - 420 WP_000539682.1 hypothetical protein VF
AFF66_RS21115 (SAMEA2158835_04217) 4247099..4248277 - 1179 WP_001095933.1 hypothetical protein VF
AFF66_RS21120 4248442..4249392 - 951 Protein_4139 ISNCY family transposase ISPlu22 VF
AFF66_RS21125 (SAMEA2158835_04220) 4249458..4249994 - 537 WP_000157067.1 single-stranded DNA-binding protein -
AFF66_RS21130 (SAMEA2158835_04221) 4250007..4250225 - 219 WP_000958171.1 hypothetical protein -
AFF66_RS21135 (SAMEA2158835_04222) 4250306..4250755 - 450 WP_000032521.1 STY4534 family ICE replication protein -
AFF66_RS21140 (SAMEA2158835_04224) 4251423..4253417 - 1995 WP_001241572.1 DNA topoisomerase III -
AFF66_RS21145 (SAMEA2158835_04225) 4253528..4254304 - 777 WP_001290445.1 TIGR03761 family integrating conjugative element protein -
AFF66_RS21150 (SAMEA2158835_04226) 4254893..4256203 - 1311 WP_001194350.1 STY4528 family pathogenicity island replication protein -
AFF66_RS21155 (SAMEA2158835_04227) 4256233..4256481 - 249 WP_000377625.1 hypothetical protein -
AFF66_RS21160 (SAMEA2158835_04228) 4256481..4257038 - 558 WP_000144322.1 DUF2857 domain-containing protein -
AFF66_RS21165 (SAMEA2158835_04230) 4257123..4257845 - 723 WP_001275616.1 DUF2786 domain-containing protein -
AFF66_RS21170 (SAMEA2158835_04231) 4257832..4258092 - 261 WP_000838568.1 hypothetical protein -
AFF66_RS21175 (SAMEA2158835_04233) 4258306..4260105 - 1800 WP_001029724.1 ParB family protein -
AFF66_RS21180 (SAMEA2158835_04234) 4260098..4261462 - 1365 WP_000018529.1 SPI-7-type island replicative DNA helicase -
AFF66_RS21185 (SAMEA2158835_04235) 4261459..4262409 - 951 WP_000068773.1 hypothetical protein VF
AFF66_RS21190 4262707..4262781 - 75 Protein_4153 helix-turn-helix domain-containing protein -
AFF66_RS21195 4263161..4263238 + 78 Protein_4154 porin family protein -
AFF66_RS21200 (SAMEA2158835_04236) 4263338..4264090 + 753 WP_001785756.1 non-specific acid phosphatase -
AFF66_RS21205 (SAMEA2158835_04237) 4264331..4264822 - 492 WP_000626103.1 GNAT family N-acetyltransferase -
AFF66_RS21210 (SAMEA2158835_04238) 4264819..4265112 - 294 WP_001110456.1 DUF1778 domain-containing protein -
AFF66_RS21215 4265429..4265651 + 223 Protein_4158 hypothetical protein -
AFF66_RS21220 (SAMEA2158835_04239) 4265917..4266792 + 876 WP_000921674.1 AraC family transcriptional regulator -
AFF66_RS21225 (SAMEA2158835_04240) 4266789..4267076 + 288 WP_001269916.1 transcriptional regulator RtsB -
AFF66_RS21230 4267099..4267315 + 217 Protein_4161 hypothetical protein -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance