MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 35874 bp
Accession: NZ_LT853882 Location: 2036406..2072279 Organism: Xanthomonas fragariae strain PD885 Replicon: chromosome
Accession: NZ_LT853882 Location: 2036406..2072279 Organism: Xanthomonas fragariae strain PD885 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PD885_RS09475 () | 2031451..2032287 | + | 837 | WP_088056827.1 | carbohydrate ABC transporter permease | - |
| PD885_RS09480 () | 2032314..2035451 | + | 3138 | WP_088057117.1 | discoidin domain-containing protein | - |
| PD885_RS09485 () | 2035711..2036465 | + | 755 | Protein_1799 | transposase | - |
| PD885_RS09490 () | 2036649..2038016 | - | 1368 | WP_088057118.1 | IS5 family transposase IS1478 | Transposase |
| PD885_RS09495 () | 2038147..2038387 | + | 241 | Protein_1801 | endonuclease/exonuclease/phosphatase family protein | - |
| PD885_RS09500 () | 2038537..2039757 | - | 1221 | WP_172402121.1 | TraB/GumN family protein | - |
| PD885_RS09505 () | 2039762..2040160 | - | 399 | WP_002805788.1 | hypothetical protein | - |
| PD885_RS09510 () | 2040165..2041049 | - | 885 | WP_002805787.1 | carbon-nitrogen hydrolase | - |
| PD885_RS09515 () | 2041127..2042161 | - | 1035 | WP_002805785.1 | agmatine deiminase family protein | - |
| PD885_RS09520 () | 2042387..2042689 | - | 303 | WP_002805783.1 | hypothetical protein | - |
| PD885_RS09525 () | 2042935..2043060 | - | 126 | WP_002805782.1 | type B 50S ribosomal protein L36 | - |
| PD885_RS09530 () | 2043238..2043921 | + | 684 | WP_002805781.1 | (d)CMP kinase | - |
| PD885_RS09535 () | 2044106..2045791 | + | 1686 | WP_002805780.1 | 30S ribosomal protein S1 | - |
| PD885_RS09540 () | 2045880..2046191 | + | 312 | WP_002805779.1 | integration host factor subunit beta | - |
| PD885_RS09545 () | 2046260..2046565 | + | 306 | WP_002805777.1 | LapA family protein | - |
| PD885_RS09550 () | 2046572..2047750 | + | 1179 | WP_002805775.1 | lipopolysaccharide assembly protein LapB | - |
| PD885_RS09555 () | 2047750..2048718 | + | 969 | WP_002805773.1 | glycosyltransferase family 4 protein | - |
| PD885_RS09560 () | 2048732..2050639 | + | 1908 | WP_002805772.1 | hypothetical protein | VF |
| PD885_RS09565 () | 2050639..2051532 | + | 894 | WP_002805770.1 | hypothetical protein | VF |
| PD885_RS09570 () | 2051686..2051973 | + | 288 | WP_108772763.1 | cation:proton antiporter | - |
| PD885_RS09575 () | 2052079..2052725 | + | 647 | Protein_1817 | IS3 family transposase IS1404 | Transposase |
| PD885_RS09580 () | 2052752..2053676 | - | 925 | Protein_1818 | IS3 family transposase ISXac3 | Transposase |
| PD885_RS09585 () | 2053740..2054834 | + | 1095 | Protein_1819 | IS5 family transposase IS1478 | Transposase |
| PD885_RS09590 () | 2054978..2056347 | + | 1370 | Protein_1820 | IS5 family transposase IS1478 | Transposase |
| PD885_RS09595 () | 2056707..2057027 | - | 321 | WP_002805766.1 | DUF1244 domain-containing protein | - |
| PD885_RS09600 () | 2057077..2057961 | + | 885 | WP_002805762.1 | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD | - |
| PD885_RS09605 () | 2058065..2059522 | + | 1458 | WP_002805758.1 | IMP dehydrogenase | - |
| PD885_RS09610 () | 2059648..2061213 | + | 1566 | WP_002805756.1 | glutamine-hydrolyzing GMP synthase | - |
| PD885_RS09615 () | 2061521..2062732 | + | 1212 | WP_002805754.1 | hypothetical protein ; Integrase | Integrase |
| PD885_RS09620 () | 2062816..2063073 | - | 258 | WP_002805752.1 | AlpA family phage regulatory protein | - |
| PD885_RS09625 () | 2063265..2064632 | + | 1368 | WP_088057118.1 | IS5 family transposase IS1478 | Transposase |
| PD885_RS09630 () | 2064706..2065710 | - | 1005 | WP_002805744.1 | hypothetical protein | - |
| PD885_RS09635 () | 2065792..2066025 | + | 234 | WP_002805742.1 | hypothetical protein | - |
| PD885_RS09640 () | 2066029..2066907 | + | 879 | WP_002805739.1 | helicase RepA family protein | - |
| PD885_RS09645 () | 2066879..2067766 | + | 888 | WP_172404498.1 | replication protein C | - |
| PD885_RS09650 () | 2068428..2068709 | + | 282 | WP_002805735.1 | TraK family protein | - |
| PD885_RS09655 () | 2069121..2069375 | + | 255 | WP_002805732.1 | Arc family DNA-binding protein | Antitoxin Detail |
| PD885_RS09660 () | 2069372..2069791 | + | 420 | WP_002805728.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PD885_RS09665 () | 2069948..2070562 | + | 615 | WP_040762517.1 | P-type conjugative transfer protein TrbJ | - |
| PD885_RS09670 () | 2070648..2070890 | + | 243 | Protein_1836 | IS3 family transposase ISXac3 | Transposase |
| PD885_RS09675 () | 2071008..2072375 | + | 1368 | WP_088056828.1 | IS5 family transposase | - |
| PD885_RS09680 () | 2072398..2073303 | + | 906 | Protein_1838 | IS3 family transposase | - |
| PD885_RS09685 () | 2073548..2074923 | - | 1376 | Protein_1839 | IS5 family transposase | - |
| PD885_RS20655 () | 2075328..2076200 | - | 873 | WP_145954097.1 | hypothetical protein | - |
| PD885_RS09695 () | 2077069..2077070 | - | 2 | WP_088056830.1 | IS5 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|