MGE detailed information
MGE type: Conjugative plasmid MGE length: 99072 bp
Accession: NZ_LS992187 Location: 1..99072 Organism: Escherichia coli isolate Escherichia coli str. 3426 Replicon: plasmid 3
Accession: NZ_LS992187 Location: 1..99072 Organism: Escherichia coli isolate Escherichia coli str. 3426 Replicon: plasmid 3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EC3426_RS25105 () | 2..1430 | - | 1429 | Protein_0 | DotA/TraY family protein | - |
| EC3426_RS25110 () | 1527..2111 | - | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| EC3426_RS25115 () | 2140..3342 | - | 1203 | WP_001387490.1 | IncI1-type conjugal transfer protein TraW | - |
| EC3426_RS25120 () | 3309..3923 | - | 615 | WP_000337395.1 | IncI1-type conjugal transfer protein TraV | - |
| EC3426_RS25125 () | 3923..6967 | - | 3045 | WP_001024789.1 | IncI1-type conjugal transfer protein TraU | - |
| EC3426_RS25130 () | 7057..7857 | - | 801 | WP_001164783.1 | IncI1-type conjugal transfer protein TraT | - |
| EC3426_RS25135 () | 7841..8029 | - | 189 | WP_001277253.1 | putative conjugal transfer protein TraS | - |
| EC3426_RS25140 () | 8093..8497 | - | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| EC3426_RS25145 () | 8548..9075 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| EC3426_RS25150 () | 9075..9779 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| EC3426_RS25155 () | 9779..11068 | - | 1290 | WP_001271994.1 | conjugal transfer protein TraO | - |
| EC3426_RS25160 () | 11071..12054 | - | 984 | WP_001191879.1 | hypothetical protein | VF |
| EC3426_RS25165 () | 12065..12757 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| EC3426_RS25170 () | 12754..13101 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| EC3426_RS25175 () | 13119..16886 | - | 3768 | WP_001141527.1 | DNA primase | - |
| EC3426_RS25180 () | 16976..17527 | - | 552 | WP_000014583.1 | Phospholipase D | VF |
| EC3426_RS25185 () | 17542..17832 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| EC3426_RS25190 () | 17829..18977 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| EC3426_RS25195 () | 18974..19792 | - | 819 | WP_000646098.1 | hypothetical protein | VF |
| EC3426_RS25200 () | 19789..20247 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| EC3426_RS25205 () | 20642..21226 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| EC3426_RS25210 () | 21286..22488 | - | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| EC3426_RS25215 () | 22573..23397 | - | 825 | WP_001238939.1 | hypothetical protein | - |
| EC3426_RS25220 () | 23548..24702 | - | 1155 | WP_001139957.1 | integrase | - |
| EC3426_RS25235 () | 25915..26064 | + | 150 | WP_001302708.1 | hypothetical protein | - |
| EC3426_RS25240 () | 26061..27353 | - | 1293 | WP_133963890.1 | hypothetical protein | VF |
| EC3426_RS25245 () | 27353..28009 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| EC3426_RS25250 () | 27994..28554 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| EC3426_RS25255 () | 28564..29178 | - | 615 | WP_059329318.1 | hypothetical protein | VF |
| EC3426_RS25260 () | 29196..30293 | - | 1098 | WP_001208805.1 | hypothetical protein | VF |
| EC3426_RS25265 () | 30306..31859 | - | 1554 | WP_000362202.1 | hypothetical protein | VF |
| EC3426_RS25270 () | 31870..32322 | - | 453 | WP_001247336.1 | hypothetical protein | VF |
| EC3426_RS25275 () | 32309..33604 | - | 1296 | WP_059329317.1 | type 4b pilus protein PilO2 | - |
| EC3426_RS25280 () | 33597..35279 | - | 1683 | WP_000748143.1 | hypothetical protein | VF |
| EC3426_RS25285 () | 35293..35730 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| EC3426_RS25290 () | 35730..36797 | - | 1068 | WP_001302629.1 | hypothetical protein | VF |
| EC3426_RS25300 () | 37471..37923 | - | 453 | WP_059329316.1 | hypothetical protein | - |
| EC3426_RS25305 () | 37966..38220 | - | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| EC3426_RS25315 () | 38382..38933 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| EC3426_RS25320 () | 39106..39789 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| EC3426_RS25325 () | 40042..40575 | - | 534 | WP_001306770.1 | transcription termination factor NusG | - |
| EC3426_RS25335 () | 41017..41304 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| EC3426_RS25340 () | 41222..41485 | - | 264 | WP_001324596.1 | ash family protein | - |
| EC3426_RS25355 () | 42458..43489 | + | 1032 | WP_000907863.1 | replication initiation protein | - |
| EC3426_RS25370 () | 44558..45067 | - | 510 | WP_000045394.1 | hypothetical protein | - |
| EC3426_RS25375 () | 45123..45725 | - | 603 | WP_000517692.1 | hypothetical protein | - |
| EC3426_RS25385 () | 46079..47425 | + | 1347 | WP_059329332.1 | hypothetical protein | - |
| EC3426_RS25395 () | 47704..49584 | + | 1881 | WP_001283344.1 | colicin 1A | - |
| EC3426_RS25400 () | 49606..49941 | - | 336 | WP_001080734.1 | colicin 1A immunity protein | - |
| EC3426_RS25405 () | 50070..50417 | + | 348 | WP_000142455.1 | hypothetical protein | - |
| EC3426_RS25410 () | 50435..51025 | - | 591 | WP_000194570.1 | hypothetical protein | - |
| EC3426_RS25415 () | 51025..51282 | - | 258 | WP_000343085.1 | hypothetical protein | - |
| EC3426_RS25420 () | 51849..52262 | + | 414 | WP_016230899.1 | hypothetical protein | - |
| EC3426_RS25425 () | 52264..53043 | + | 780 | WP_001164198.1 | site-specific integrase | - |
| EC3426_RS25430 () | 53223..53867 | + | 645 | WP_001144036.1 | ParA family protein | - |
| EC3426_RS25435 () | 53954..54262 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| EC3426_RS25440 () | 54676..55656 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| EC3426_RS25445 () | 55649..56065 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| EC3426_RS25450 () | 56067..57341 | - | 1275 | WP_000457524.1 | Y-family DNA polymerase | - |
| EC3426_RS25455 () | 57341..57778 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| EC3426_RS25460 () | 57775..58023 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| EC3426_RS25470 () | 58441..59343 | + | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| EC3426_RS25475 () | 59340..59651 | + | 312 | WP_031942433.1 | hypothetical protein | - |
| EC3426_RS25480 () | 59727..60410 | + | 684 | WP_000086147.1 | DNA methylase | - |
| EC3426_RS25485 () | 60411..60632 | + | 222 | WP_059329357.1 | hypothetical protein | - |
| EC3426_RS25490 () | 60646..61080 | + | 435 | WP_000274500.1 | DUF1380 family protein | - |
| EC3426_RS27160 () | 61126..61902 | + | 777 | WP_001005023.1 | hypothetical protein | - |
| EC3426_RS25505 () | 62437..62739 | + | 303 | WP_072275141.1 | antirestriction protein | - |
| EC3426_RS25510 () | 62786..63208 | + | 423 | WP_000271744.1 | DUF1380 family protein | - |
| EC3426_RS25515 () | 63205..63396 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| EC3426_RS25530 () | 63674..65341 | - | 1668 | WP_012372796.1 | group II intron reverse transcriptase/maturase | - |
| EC3426_RS25540 () | 66508..67035 | + | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| EC3426_RS25545 () | 67093..67326 | + | 234 | WP_000006024.1 | DUF905 domain-containing protein | - |
| EC3426_RS25550 () | 67385..69343 | + | 1959 | WP_133963892.1 | ParB/RepB/Spo0J family partition protein | - |
| EC3426_RS25555 () | 69398..69832 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| EC3426_RS25560 () | 69829..70548 | + | 720 | WP_001276263.1 | plasmid SOS inhibition protein A | - |
| EC3426_RS25565 () | 70545..71141 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| EC3426_RS25575 () | 71604..72104 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| EC3426_RS25590 () | 72833..73267 | + | 435 | WP_000218864.1 | hypothetical protein | - |
| EC3426_RS25595 () | 73361..73627 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| EC3426_RS25600 () | 73692..74630 | + | 939 | WP_000038403.1 | ISNCY family transposase ISRor2 | VF |
| EC3426_RS25605 () | 74630..74875 | + | 246 | WP_001260884.1 | hypothetical protein | - |
| EC3426_RS25610 () | 74906..75157 | - | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| EC3426_RS25615 () | 75191..75388 | - | 198 | WP_001161117.1 | hypothetical protein | - |
| EC3426_RS25625 () | 75737..76585 | + | 849 | WP_001077019.1 | DUF4942 domain-containing protein | - |
| EC3426_RS25630 () | 76671..77006 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| EC3426_RS25635 () | 77239..77571 | + | 333 | WP_001281051.1 | hypothetical protein | - |
| EC3426_RS25640 () | 77582..80281 | + | 2700 | WP_021520371.1 | hypothetical protein | Relaxase |
| EC3426_RS25645 () | 80318..82609 | - | 2292 | WP_021520372.1 | hypothetical protein | - |
| EC3426_RS25650 () | 82602..83672 | - | 1071 | WP_001542508.1 | IncI1-type conjugal transfer protein TrbB | - |
| EC3426_RS25655 () | 83691..84899 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 85079..85141 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 85079..85141 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 85079..85141 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 85079..85141 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| EC3426_RS25660 () | 85191..85343 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| EC3426_RS25665 () | 85415..85666 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| EC3426_RS25670 () | 85966..86262 | + | 297 | WP_001275298.1 | hypothetical protein | - |
| EC3426_RS27040 () | 86327..86503 | - | 177 | WP_001054897.1 | hypothetical protein | - |
| EC3426_RS25675 () | 86894..87103 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| EC3426_RS25680 () | 87175..87837 | - | 663 | WP_000644796.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| EC3426_RS25685 () | 87908..90076 | - | 2169 | WP_000698354.1 | DotA/TraY family protein | - |
| EC3426_RS25690 () | 90173..90757 | - | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| EC3426_RS25695 () | 90786..91988 | - | 1203 | WP_001387490.1 | IncI1-type conjugal transfer protein TraW | - |
| EC3426_RS25700 () | 91955..92569 | - | 615 | WP_000337395.1 | IncI1-type conjugal transfer protein TraV | - |
| EC3426_RS25705 () | 92569..95613 | - | 3045 | WP_001024789.1 | IncI1-type conjugal transfer protein TraU | - |
| EC3426_RS25710 () | 95703..96503 | - | 801 | WP_001164783.1 | IncI1-type conjugal transfer protein TraT | - |
| EC3426_RS25715 () | 96487..96674 | - | 188 | Protein_103 | putative conjugal transfer protein TraS | - |
| EC3426_RS25720 () | 96738..97142 | - | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| EC3426_RS25725 () | 97193..97720 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| EC3426_RS25730 () | 97720..98421 | - | 702 | Protein_106 | IncI1-type conjugal transfer protein TraP | - |
| EC3426_RS25735 () | 98421..99071 | - | 651 | Protein_107 | conjugal transfer protein TraO | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|