MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 177354 bp
Accession: NZ_LR134369 Location: 1332952..1510305 Organism: Bifidobacterium longum strain NCTC11818 Replicon: chromosome
Accession: NZ_LR134369 Location: 1332952..1510305 Organism: Bifidobacterium longum strain NCTC11818 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL198_RS06170 () | 1329222..1330853 | + | 1632 | WP_013582778.1 | substrate-binding domain-containing protein | - |
| EL198_RS06175 () | 1330931..1331620 | - | 690 | WP_007054320.1 | M23 family metallopeptidase | - |
| EL198_RS06195 () | 1332627..1333670 | - | 1044 | WP_007054363.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| EL198_RS06200 () | 1333667..1334221 | - | 555 | WP_008783284.1 | hypothetical protein | VF |
| EL198_RS10705 () | 1334238..1335119 | - | 882 | WP_007054365.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB | - |
| EL198_RS10710 () | 1335181..1335747 | - | 567 | WP_007052688.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE | - |
| EL198_RS06210 () | 1335768..1336739 | - | 972 | WP_007057620.1 | DNA polymerase III subunit delta | - |
| EL198_RS06215 () | 1336806..1338152 | - | 1347 | WP_013582779.1 | amidohydrolase family protein | - |
| EL198_RS06220 () | 1338292..1340046 | - | 1755 | WP_016507697.1 | ComEC/Rec2 family competence protein | - |
| EL198_RS10715 () | 1340043..1340540 | - | 498 | WP_007054369.1 | helix-hairpin-helix domain-containing protein | - |
| EL198_RS06230 () | 1340982..1343945 | - | 2964 | WP_010080746.1 | leucine--tRNA ligase | - |
| EL198_RS06235 () | 1343988..1344833 | - | 846 | WP_010080747.1 | glutamate ABC transporter substrate-binding protein | - |
| EL198_RS06240 () | 1344929..1345879 | - | 951 | WP_007054371.1 | magnesium transporter CorA family protein | - |
| EL198_RS06245 () | 1345994..1346839 | - | 846 | WP_007052680.1 | histidine phosphatase family protein | - |
| EL198_RS06250 () | 1346908..1348203 | + | 1296 | WP_013582782.1 | DNA methyltransferase | - |
| EL198_RS06255 () | 1348231..1348635 | - | 405 | WP_007052678.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| EL198_RS06260 () | 1348914..1349849 | + | 936 | WP_007052677.1 | DMT family transporter | - |
| EL198_RS10845 () | 1349903..1350013 | + | 111 | Protein_1151 | nitroreductase | - |
| EL198_RS06265 () | 1350233..1351201 | + | 969 | WP_007052675.1 | hypothetical protein | - |
| EL198_RS06270 () | 1351274..1351813 | + | 540 | WP_032735440.1 | Peptidyl-prolyl cis-trans isomerase B | VF |
| EL198_RS06275 () | 1351910..1352425 | + | 516 | WP_032740853.1 | IS3 family transposase ISBlo3 | Transposase |
| EL198_RS06280 () | 1352425..1352997 | + | 573 | Protein_1155 | IS3 family transposase ISBlo3 | Transposase |
| EL198_RS06285 () | 1353131..1354333 | + | 1203 | WP_007053137.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| EL198_RS06290 () | 1354330..1355295 | + | 966 | WP_013582545.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| EL198_RS06295 () | 1355292..1356347 | + | 1056 | WP_013582544.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| EL198_RS06300 () | 1356462..1356752 | + | 291 | Protein_1159 | IS3 family transposase ISBlo3 | Transposase |
| EL198_RS06305 () | 1356870..1359194 | - | 2325 | WP_032740928.1 | Bifunctional (p)ppGpp synthase/hydrolase RelA | VF |
| EL198_RS06310 () | 1359328..1359804 | - | 477 | WP_007055963.1 | dUTP diphosphatase | - |
| EL198_RS06315 () | 1359804..1360097 | - | 294 | WP_007052669.1 | DUF4193 domain-containing protein | - |
| EL198_RS06320 () | 1360256..1361347 | + | 1092 | WP_007056777.1 | DUF3071 domain-containing protein | - |
| EL198_RS06325 () | 1361357..1362625 | - | 1269 | WP_007054496.1 | alkaline phosphatase family protein | - |
| EL198_RS06330 () | 1362876..1365605 | + | 2730 | WP_007052666.1 | DNA topoisomerase IV subunit A | - |
| EL198_RS06335 () | 1365750..1366538 | + | 789 | WP_013582787.1 | hypothetical protein | VF |
| EL198_RS06340 () | 1366549..1371282 | - | 4734 | WP_013582788.1 | DEAD/DEAH box helicase | - |
| EL198_RS06345 () | 1371298..1372290 | - | 993 | WP_013582789.1 | ribokinase | - |
| EL198_RS06350 () | 1372334..1373560 | - | 1227 | WP_013582790.1 | MFS transporter | - |
| EL198_RS06355 () | 1373727..1376003 | - | 2277 | WP_013582791.1 | type IIA DNA topoisomerase subunit B | - |
| EL198_RS06360 () | 1376061..1377485 | - | 1425 | WP_007055162.1 | RNA polymerase sigma factor RpoD | VF |
| EL198_RS06365 () | 1377688..1378350 | - | 663 | WP_007055157.1 | DUF4192 family protein | - |
| EL198_RS06370 () | 1378555..1379637 | + | 1083 | WP_007055156.1 | polyprenyl synthetase family protein | - |
| EL198_RS06375 () | 1379781..1382054 | + | 2274 | WP_032740855.1 | Serine/threonine-protein kinase PknD | VF |
| EL198_RS06380 () | 1382106..1382810 | - | 705 | WP_007058769.1 | 1-acyl-sn-glycerol-3-phosphate acyltransferase | - |
| EL198_RS06385 () | 1382871..1383566 | + | 696 | WP_013582793.1 | hypothetical protein | - |
| EL198_RS06390 () | 1383720..1383908 | - | 189 | WP_007054484.1 | hypothetical protein | - |
| EL198_RS06395 () | 1383955..1385001 | - | 1047 | WP_013582794.1 | anthranilate phosphoribosyltransferase | - |
| EL198_RS10850 () | 1385729..1385944 | + | 216 | WP_007055155.1 | transposase | - |
| EL198_RS06410 () | 1386255..1389149 | - | 2895 | WP_007055154.1 | preprotein translocase subunit SecA | - |
| EL198_RS06415 () | 1389311..1389973 | - | 663 | WP_007054480.1 | ribosome-associated translation inhibitor RaiA | - |
| EL198_RS06425 () | 1390850..1391443 | - | 594 | WP_032736307.1 | RecX family transcriptional regulator | - |
| EL198_RS06430 () | 1391446..1392639 | - | 1194 | WP_007052644.1 | recombinase RecA | - |
| EL198_RS06435 () | 1392940..1393173 | - | 234 | WP_007052642.1 | DUF3046 domain-containing protein | - |
| EL198_RS06440 () | 1393285..1393800 | - | 516 | WP_007052641.1 | helix-turn-helix transcriptional regulator | - |
| EL198_RS06445 () | 1393860..1394393 | - | 534 | WP_007054477.1 | nicotinamide-nucleotide amidohydrolase family protein | - |
| EL198_RS06450 () | 1394405..1395040 | - | 636 | WP_007052639.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| EL198_RS06455 () | 1395217..1398126 | - | 2910 | WP_013582797.1 | DNA translocase FtsK | - |
| EL198_RS06460 () | 1398338..1399087 | + | 750 | WP_013582798.1 | hypothetical protein | VF |
| EL198_RS06465 () | 1399121..1400107 | - | 987 | WP_007052636.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| EL198_RS06470 () | 1400118..1401572 | - | 1455 | WP_032743317.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| EL198_RS06475 () | 1401704..1402444 | + | 741 | WP_007056209.1 | hypothetical protein | VF |
| EL198_RS06480 () | 1402477..1403493 | - | 1017 | WP_007052632.1 | DMT family transporter | - |
| EL198_RS06485 () | 1403633..1404532 | - | 900 | WP_007052631.1 | Bax inhibitor-1/YccA family protein | - |
| EL198_RS06490 () | 1404713..1405573 | - | 861 | WP_013582800.1 | DUF5067 domain-containing protein | - |
| EL198_RS06495 () | 1405909..1407141 | + | 1233 | WP_007056207.1 | sensor histidine kinase | - |
| EL198_RS06500 () | 1407176..1407901 | + | 726 | WP_007056206.1 | Transcriptional regulatory protein LiaR | VF |
| EL198_RS06505 () | 1407941..1408582 | + | 642 | WP_007052627.1 | GNAT family N-acetyltransferase | - |
| EL198_RS06510 () | 1408672..1410777 | + | 2106 | WP_013582801.1 | DUF262 domain-containing protein | - |
| EL198_RS06515 () | 1410827..1411318 | - | 492 | WP_007052625.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| EL198_RS06520 () | 1411315..1411707 | - | 393 | WP_013410773.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| EL198_RS06525 () | 1411852..1414551 | - | 2700 | WP_013582802.1 | aconitate hydratase AcnA | - |
| EL198_RS06530 () | 1414669..1417257 | - | 2589 | WP_013582803.1 | cation-translocating P-type ATPase | - |
| EL198_RS06535 () | 1417348..1418043 | - | 696 | WP_007055252.1 | hypothetical protein | - |
| EL198_RS06540 () | 1418055..1419323 | - | 1269 | WP_007055251.1 | RsmD family RNA methyltransferase | - |
| EL198_RS06545 () | 1419313..1420071 | - | 759 | WP_008783114.1 | DUF3159 domain-containing protein | - |
| EL198_RS06550 () | 1420087..1420941 | - | 855 | WP_011068026.1 | DUF3710 domain-containing protein | - |
| EL198_RS06555 () | 1421009..1421869 | - | 861 | WP_007058594.1 | exodeoxyribonuclease III | - |
| EL198_RS06560 () | 1421974..1423983 | - | 2010 | WP_013582805.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| EL198_RS06565 () | 1424006..1425010 | - | 1005 | WP_003832139.1 | ABC transporter permease | - |
| EL198_RS06570 () | 1425029..1425955 | - | 927 | Protein_1211 | ABC transporter permease | - |
| EL198_RS06575 () | 1426256..1427896 | - | 1641 | WP_007054457.1 | ABC transporter substrate-binding protein | - |
| EL198_RS06580 () | 1428148..1429221 | - | 1074 | WP_013582807.1 | Tyrosine recombinase XerC | VF |
| EL198_RS06585 () | 1429256..1429513 | - | 258 | WP_007052610.1 | hypothetical protein | - |
| EL198_RS06590 () | 1429725..1430828 | - | 1104 | WP_080557738.1 | prephenate dehydrogenase/arogenate dehydrogenase family protein | - |
| EL198_RS06595 () | 1430786..1431763 | - | 978 | WP_008783121.1 | chorismate mutase | - |
| EL198_RS06600 () | 1431843..1432289 | - | 447 | WP_007052607.1 | alcohol dehydrogenase | - |
| EL198_RS06605 () | 1432389..1434320 | - | 1932 | WP_007052606.1 | GTP-binding protein TypA/BipA | VF |
| EL198_RS06610 () | 1434635..1435984 | - | 1350 | WP_007052605.1 | MFS transporter | - |
| EL198_RS06615 () | 1436016..1437263 | - | 1248 | WP_007054451.1 | cysteine desulfurase | - |
| EL198_RS06620 () | 1437266..1438159 | - | 894 | WP_007052603.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| EL198_RS06625 () | 1438163..1439794 | - | 1632 | WP_007054450.1 | L-aspartate oxidase | - |
| EL198_RS06630 () | 1439886..1441166 | - | 1281 | WP_007052601.1 | quinolinate synthase NadA | - |
| EL198_RS06635 () | 1441226..1442053 | - | 828 | WP_013582809.1 | NUDIX hydrolase | - |
| EL198_RS06640 () | 1442185..1442901 | - | 717 | WP_007055260.1 | SMC-Scp complex subunit ScpB | - |
| EL198_RS06645 () | 1442914..1443828 | - | 915 | WP_007052598.1 | segregation/condensation protein A | - |
| EL198_RS06650 () | 1443847..1444686 | - | 840 | WP_007052597.1 | hypothetical protein | VF |
| EL198_RS06655 () | 1444948..1447794 | - | 2847 | WP_013582810.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| EL198_RS06660 () | 1447922..1448848 | - | 927 | WP_032743318.1 | Tyrosine recombinase XerD | VF |
| EL198_RS06665 () | 1448918..1449301 | - | 384 | WP_007052594.1 | 50S ribosomal protein L20 | - |
| EL198_RS06670 () | 1449354..1449548 | - | 195 | WP_007052593.1 | 50S ribosomal protein L35 | - |
| EL198_RS06675 () | 1449529..1450251 | - | 723 | WP_032682519.1 | translation initiation factor IF-3 | - |
| EL198_RS06680 () | 1450536..1451540 | - | 1005 | WP_007054442.1 | fused MFS/spermidine synthase | - |
| EL198_RS10725 () | 1451455..1451670 | - | 216 | WP_162094057.1 | hypothetical protein | - |
| EL198_RS06685 () | 1451772..1452497 | + | 726 | WP_007054441.1 | thiamine diphosphokinase | - |
| EL198_RS06690 () | 1452738..1453796 | + | 1059 | WP_007052589.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| EL198_RS06695 () | 1453890..1454399 | + | 510 | WP_007054439.1 | Cys-tRNA(Pro) deacylase | - |
| EL198_RS06700 () | 1454439..1455497 | - | 1059 | WP_074710142.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| EL198_RS06705 () | 1455722..1456678 | + | 957 | WP_007054437.1 | aldose 1-epimerase family protein | - |
| EL198_RS06710 () | 1456803..1457747 | + | 945 | WP_007057264.1 | aldose 1-epimerase family protein | - |
| EL198_RS06715 () | 1458013..1458333 | - | 321 | WP_007055264.1 | hypothetical protein | - |
| EL198_RS06720 () | 1458333..1459085 | - | 753 | WP_007057260.1 | sigma-70 family RNA polymerase sigma factor | - |
| EL198_RS06725 () | 1459260..1460813 | + | 1554 | WP_013582813.1 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase | - |
| EL198_RS06730 () | 1460935..1461930 | + | 996 | WP_013410747.1 | GNAT family N-acetyltransferase | - |
| EL198_RS06735 () | 1462049..1465726 | - | 3678 | WP_013582814.1 | chromosome segregation protein SMC | - |
| EL198_RS06740 () | 1465787..1467391 | - | 1605 | WP_007052575.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| EL198_RS06750 () | 1468646..1469497 | + | 852 | WP_007057256.1 | hypothetical protein | - |
| EL198_RS06755 () | 1469801..1471396 | + | 1596 | WP_013582815.1 | aminopeptidase P family protein | - |
| EL198_RS06760 () | 1471445..1471966 | + | 522 | WP_007057255.1 | NUDIX domain-containing protein | - |
| EL198_RS06765 () | 1472016..1473725 | - | 1710 | WP_007052568.1 | Glutathione import ATP-binding protein GsiA | VF |
| EL198_RS06770 () | 1473729..1474898 | - | 1170 | WP_007052567.1 | ABC transporter permease | - |
| EL198_RS06775 () | 1474900..1475991 | - | 1092 | WP_007052566.1 | ABC transporter permease | - |
| EL198_RS06780 () | 1476159..1477793 | - | 1635 | WP_007057390.1 | ABC transporter substrate-binding protein | - |
| EL198_RS06785 () | 1478073..1479356 | - | 1284 | WP_007057958.1 | N-acetylglucosamine-6-phosphate deacetylase | - |
| EL198_RS06790 () | 1479412..1480224 | - | 813 | WP_007052563.1 | glucosamine-6-phosphate deaminase | - |
| EL198_RS06795 () | 1480562..1481686 | + | 1125 | WP_007052562.1 | ROK family transcriptional regulator | - |
| EL198_RS06800 () | 1481826..1482740 | - | 915 | WP_023658453.1 | ROK family protein | - |
| EL198_RS06805 () | 1482967..1484181 | + | 1215 | WP_126623116.1 | ROK family transcriptional regulator | - |
| EL198_RS06810 () | 1484254..1485150 | + | 897 | WP_013582817.1 | carbohydrate kinase | - |
| EL198_RS06815 () | 1485225..1485614 | + | 390 | WP_013582818.1 | VOC family protein | - |
| EL198_RS06820 () | 1485720..1486964 | + | 1245 | WP_013582819.1 | MFS transporter | - |
| EL198_RS06825 () | 1487061..1487549 | - | 489 | WP_013582820.1 | D-tyrosyl-tRNA(Tyr) deacylase | - |
| EL198_RS06830 () | 1487639..1488325 | - | 687 | WP_007052555.1 | VWA domain-containing protein | - |
| EL198_RS06835 () | 1488469..1489572 | - | 1104 | WP_007056379.1 | macro domain-containing protein | - |
| EL198_RS06845 () | 1490313..1491242 | - | 930 | WP_013582822.1 | FtsQ-type POTRA domain-containing protein | - |
| EL198_RS06850 () | 1491377..1492915 | - | 1539 | WP_013582823.1 | UDP-N-acetylmuramate--L-alanine ligase | - |
| EL198_RS06855 () | 1493016..1494197 | - | 1182 | WP_007052550.1 | UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase | - |
| EL198_RS06860 () | 1494213..1495430 | - | 1218 | WP_007054401.1 | putative lipid II flippase FtsW | - |
| EL198_RS06865 () | 1495417..1496862 | - | 1446 | WP_007054400.1 | UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase | - |
| EL198_RS06870 () | 1496917..1498023 | - | 1107 | WP_007052547.1 | phospho-N-acetylmuramoyl-pentapeptide- transferase | - |
| EL198_RS06875 () | 1498068..1499519 | - | 1452 | WP_007054398.1 | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase | - |
| EL198_RS06880 () | 1499568..1500440 | - | 873 | WP_007054397.1 | hypothetical protein | - |
| EL198_RS06885 () | 1500467..1502269 | - | 1803 | WP_013582825.1 | penicillin-binding protein 2 | - |
| EL198_RS06890 () | 1502266..1502715 | - | 450 | WP_007052543.1 | hypothetical protein | - |
| EL198_RS06895 () | 1502722..1503801 | - | 1080 | WP_007052542.1 | 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH | - |
| EL198_RS06900 () | 1503801..1504322 | - | 522 | WP_007052541.1 | division/cell wall cluster transcriptional repressor MraZ | - |
| EL198_RS06905 () | 1504655..1506934 | + | 2280 | WP_007052539.1 | AAA family ATPase | - |
| EL198_RS06910 () | 1506945..1508144 | + | 1200 | WP_007054393.1 | phosphoglycerate dehydrogenase | - |
| EL198_RS06915 () | 1508279..1508755 | - | 477 | WP_007052537.1 | transcriptional regulator NrdR | - |
| EL198_RS06920 () | 1508772..1509008 | - | 237 | WP_032740860.1 | LysM peptidoglycan-binding domain-containing protein | - |
| EL198_RS06930 () | 1509088..1509849 | - | 762 | WP_013582291.1 | IS21 family transposase ISBlo2 | Transposase |
| EL198_RS06935 () | 1509846..1511303 | - | 1458 | WP_013582292.1 | IS21 family transposase | - |
| EL198_RS06945 () | 1511723..1512448 | + | 726 | WP_007052535.1 | transcriptional repressor LexA | - |
| EL198_RS06950 () | 1512614..1513552 | + | 939 | WP_007052534.1 | cation diffusion facilitator family transporter | - |
| EL198_RS06955 () | 1513694..1514656 | - | 963 | WP_007052533.1 | L-lactate dehydrogenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|