MGE detailed information
MGE type: Prophage MGE length: 74632 bp
Accession: NZ_LM993812 Location: 221614..296245 Organism: Escherichia coli strain K-12 substr. HMS174 Replicon: chromosome
Accession: NZ_LM993812 Location: 221614..296245 Organism: Escherichia coli strain K-12 substr. HMS174 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECHMS174_RS00985 () | 217057..218775 | - | 1719 | WP_001260717.1 | proline--tRNA ligase | - |
| ECHMS174_RS00990 () | 218887..219594 | - | 708 | WP_000094011.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
| ECHMS174_RS00995 () | 219591..219995 | - | 405 | WP_001202329.1 | Rcs stress response system protein RcsF | - |
| ECHMS174_RS01000 () | 220113..220928 | - | 816 | WP_000874226.1 | methionine ABC transporter substrate-binding lipoprotein MetQ | - |
| ECHMS174_RS01005 () | 220968..221621 | - | 654 | WP_001294600.1 | methionine ABC transporter permease MetI | - |
| ECHMS174_RS01010 () | 221614..222645 | - | 1032 | WP_000594006.1 | hypothetical protein | VF |
| ECHMS174_RS01015 () | 222833..223408 | + | 576 | WP_001140187.1 | hypothetical protein | VF |
| ECHMS174_RS01050 () | 229167..229970 | + | 804 | WP_000997010.1 | 2,5-didehydrogluconate reductase DkgB | - |
| ECHMS174_RS01055 () | 229967..230881 | - | 915 | WP_000648572.1 | hypothetical protein | VF |
| ECHMS174_RS01060 () | 231122..231922 | + | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| ECHMS174_RS01065 () | 231953..232549 | + | 597 | Protein_204 | methyltransferase domain-containing protein | - |
| ECHMS174_RS01070 () | 232597..233955 | - | 1359 | WP_000644685.1 | hypothetical protein | VF |
| ECHMS174_RS01075 () | 234027..234782 | - | 756 | WP_001052715.1 | hydroxyacylglutathione hydrolase | - |
| ECHMS174_RS01080 () | 234816..235538 | + | 723 | WP_001326702.1 | class I SAM-dependent methyltransferase | - |
| ECHMS174_RS01085 () | 235535..236002 | - | 468 | WP_000917883.1 | ribonuclease HI | - |
| ECHMS174_RS01090 () | 236067..236798 | + | 732 | WP_001340895.1 | DNA polymerase III subunit epsilon | - |
| ECHMS174_RS01100 () | 237335..238120 | + | 786 | WP_001086141.1 | lipoprotein | - |
| ECHMS174_RS01105 () | 238257..238736 | - | 480 | WP_001236645.1 | hypothetical protein | - |
| ECHMS174_RS01110 () | 238746..239102 | - | 357 | Protein_212 | hypothetical protein | - |
| ECHMS174_RS25160 () | 239100..239378 | + | 279 | Protein_213 | ISAs1 family transposase | - |
| ECHMS174_RS01120 () | 239419..240189 | - | 771 | WP_001118036.1 | 2-oxoglutaramate amidase | - |
| ECHMS174_RS01125 () | 240370..240816 | + | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| ECHMS174_RS01130 () | 240859..243303 | - | 2445 | WP_000973083.1 | hypothetical protein | VF |
| ECHMS174_RS01135 () | 243543..244121 | + | 579 | WP_000284050.1 | hypothetical protein | VF |
| ECHMS174_RS01140 () | 244327..245094 | + | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| ECHMS174_RS01145 () | 245065..245805 | - | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| ECHMS174_RS01150 () | 245961..246239 | - | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| ECHMS174_RS01155 () | 246242..246502 | - | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| ECHMS174_RS01160 () | 246712..247461 | + | 750 | WP_000056849.1 | hypothetical protein | VF |
| ECHMS174_RS01165 () | 247637..248134 | + | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| ECHMS174_RS01170 () | 248358..250070 | - | 1713 | Protein_224 | hypothetical protein | VF |
| ECHMS174_RS01175 () | 250042..250827 | + | 786 | WP_000207552.1 | hypothetical protein | VF |
| ECHMS174_RS01180 () | 250898..251953 | + | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| ECHMS174_RS01185 () | 252005..252298 | + | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| ECHMS174_RS01190 () | 252301..252699 | + | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| ECHMS174_RS01195 () | 252709..253161 | + | 453 | WP_001059892.1 | GNAT family N-acetyltransferase | - |
| ECHMS174_RS01200 () | 253479..253685 | + | 207 | Protein_230 | RtcB family protein | - |
| ECHMS174_RS01205 () | 253681..254202 | + | 522 | Protein_231 | peptide chain release factor H | - |
| ECHMS174_RS01210 () | 254259..255716 | - | 1458 | WP_001292994.1 | cytosol nonspecific dipeptidase | - |
| ECHMS174_RS01215 () | 255977..256435 | + | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| ECHMS174_RS01220 () | 256527..257771 | + | 1245 | WP_000189532.1 | esterase FrsA | - |
| - () | 257031..257111 | + | 81 | NuclAT_11 | - | - |
| - () | 257031..257111 | + | 81 | NuclAT_11 | - | - |
| - () | 257031..257111 | + | 81 | NuclAT_11 | - | - |
| - () | 257031..257111 | + | 81 | NuclAT_11 | - | - |
| ECHMS174_RS01225 () | 257829..258230 | + | 402 | WP_000174689.1 | sigma factor-binding protein Crl | - |
| ECHMS174_RS01230 () | 258269..259324 | - | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
| ECHMS174_RS01235 () | 259612..260715 | + | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| ECHMS174_RS01240 () | 260727..261980 | + | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| ECHMS174_RS01250 () | 262552..262893 | - | 342 | WP_000854672.1 | type IV toxin-antitoxin system toxin YkfI | Toxin Detail |
| ECHMS174_RS01255 () | 262914..263231 | - | 318 | WP_000070395.1 | type IV toxin-antitoxin system antitoxin YafW | Antitoxin Detail |
| ECHMS174_RS22950 () | 263250..263471 | - | 222 | WP_000691994.1 | DUF987 domain-containing protein | - |
| ECHMS174_RS01260 () | 263480..263956 | - | 477 | WP_000811693.1 | RadC family protein | - |
| ECHMS174_RS01265 () | 263972..264430 | - | 459 | WP_000211838.1 | antirestriction protein | - |
| ECHMS174_RS01270 () | 264528..264767 | - | 240 | WP_000194654.1 | DUF905 domain-containing protein | - |
| ECHMS174_RS01275 () | 264844..265311 | - | 468 | WP_001547765.1 | hypothetical protein | - |
| ECHMS174_RS25165 () | 265334..265777 | - | 444 | WP_000824223.1 | hypothetical protein | - |
| ECHMS174_RS25170 () | 265777..266004 | - | 228 | WP_001548158.1 | hypothetical protein | - |
| ECHMS174_RS25175 () | 266000..266191 | - | 192 | Protein_248 | DeoR family transcriptional regulator | - |
| ECHMS174_RS01290 () | 266408..267229 | - | 822 | WP_000197389.1 | DUF945 domain-containing protein | - |
| ECHMS174_RS01295 () | 267321..268184 | - | 864 | WP_001065553.1 | GTPase family protein | - |
| ECHMS174_RS01300 () | 268513..269406 | - | 894 | WP_000770246.1 | LysR family transcriptional regulator | - |
| ECHMS174_RS01305 () | 269502..269759 | + | 258 | Protein_252 | IS3 family transposase ISEc52 | Transposase |
| ECHMS174_RS01310 () | 269827..270978 | + | 1152 | WP_001254938.1 | IS30 family transposase IS30D | Transposase |
| ECHMS174_RS01315 () | 270988..271413 | + | 426 | Protein_254 | IS3 family transposase | - |
| ECHMS174_RS01330 () | 272086..273177 | + | 1092 | Protein_255 | group II intron reverse transcriptase/maturase | - |
| ECHMS174_RS01335 () | 273325..274341 | - | 1017 | WP_010723085.1 | IS5 family transposase IS5D | Transposase |
| ECHMS174_RS01340 () | 274549..275952 | + | 1404 | WP_001393629.1 | S-methylmethionine permease | - |
| ECHMS174_RS01345 () | 275939..276871 | + | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| ECHMS174_RS01350 () | 276980..278026 | - | 1047 | WP_000192349.1 | hypothetical protein | VF |
| ECHMS174_RS01355 () | 278038..278385 | - | 348 | Protein_260 | ABC transporter permease subunit | - |
| ECHMS174_RS01360 () | 278402..279099 | - | 698 | Protein_261 | IS1 family transposase IS1R | Transposase |
| ECHMS174_RS22975 () | 279155..279328 | + | 174 | Protein_262 | IS30 family transposase | - |
| ECHMS174_RS01370 () | 279338..279586 | - | 249 | Protein_263 | IS3 family transposase ISEhe3 | Transposase |
| ECHMS174_RS01375 () | 279609..279959 | - | 351 | WP_001030800.1 | type IV toxin-antitoxin system antitoxin YagB | - |
| ECHMS174_RS01380 () | 280053..281207 | - | 1155 | WP_010723086.1 | IS481 family transposase ISEc19 | Transposase |
| ECHMS174_RS01385 () | 281502..282410 | + | 909 | WP_001136613.1 | 2-keto-3-deoxygluconate aldolase | - |
| ECHMS174_RS01390 () | 282425..284392 | + | 1968 | WP_000151261.1 | xylonate dehydratase YagF | - |
| ECHMS174_RS01395 () | 284619..286001 | + | 1383 | WP_000192863.1 | MFS transporter | - |
| ECHMS174_RS01400 () | 286013..287623 | + | 1611 | WP_000406871.1 | glycoside hydrolase family 43 protein | - |
| ECHMS174_RS01405 () | 287628..288386 | - | 759 | WP_001121657.1 | DNA-binding transcriptional repressor XynR | - |
| ECHMS174_RS01410 () | 288525..289529 | - | 1005 | WP_001281825.1 | hypothetical protein | VF |
| ECHMS174_RS22980 () | 289653..289856 | + | 204 | Protein_272 | DUF3987 domain-containing protein | - |
| ECHMS174_RS01415 () | 289873..290570 | - | 698 | Protein_273 | IS1 family transposase IS1R | Transposase |
| ECHMS174_RS01420 () | 290625..291455 | + | 831 | Protein_274 | type III restriction endonuclease subunit R | - |
| ECHMS174_RS01425 () | 291546..292172 | - | 627 | WP_000860996.1 | inovirus Gp2 family protein | - |
| ECHMS174_RS01430 () | 292444..293142 | - | 699 | WP_001214248.1 | recombinase family protein | - |
| ECHMS174_RS01435 () | 293169..294023 | - | 855 | WP_000072039.1 | hypothetical protein | - |
| ECHMS174_RS01440 () | 294142..294366 | - | 225 | WP_001272156.1 | helix-turn-helix domain-containing protein | - |
| ECHMS174_RS01445 () | 294363..294803 | - | 441 | WP_000224818.1 | hypothetical protein | - |
| ECHMS174_RS01450 () | 294920..296320 | - | 1401 | WP_001407714.1 | hypothetical protein ; Integrase | Integrase |
| ECHMS174_RS01460 () | 296605..296943 | - | 339 | Protein_281 | LysR family transcriptional regulator | - |
| ECHMS174_RS01465 () | 296994..297950 | - | 957 | WP_000121359.1 | molybdenum cofactor insertion chaperone PaoD | - |
| ECHMS174_RS01470 () | 297960..300158 | - | 2199 | WP_000667026.1 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| ECHMS174_RS01475 () | 300155..301111 | - | 957 | WP_000643333.1 | aldehyde oxidoreductase FAD-binding subunit PaoB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|