MGE detailed information
MGE type: Prophage MGE length: 46924 bp
Accession: NZ_CP122685 Location: 2441061..2487984 Organism: Escherichia coli strain ETEC4067 Replicon: chromosome
Accession: NZ_CP122685 Location: 2441061..2487984 Organism: Escherichia coli strain ETEC4067 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDX30_RS11940 (2436961) | 2436961..2438181 | + | 1221 | WP_000225257.1 | DNA-binding transcriptional repressor Mlc | - |
| QDX30_RS11945 (2438306) | 2438306..2439001 | + | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| QDX30_RS11950 (2438954) | 2438954..2440246 | - | 1293 | WP_071591524.1 | voltage-gated ClC-type chloride channel ClcB | - |
| QDX30_RS11955 (2440404) | 2440404..2441018 | - | 615 | WP_063085996.1 | Tat proofreading chaperone DmsD | - |
| QDX30_RS11960 (2441061) | 2441061..2441915 | - | 855 | WP_063085994.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| QDX30_RS11965 (2441917) | 2441917..2442534 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| QDX30_RS11970 (2442545) | 2442545..2444968 | - | 2424 | WP_074150141.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| QDX30_RS11975 (2445029) | 2445029..2447455 | - | 2427 | WP_000041646.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| QDX30_RS11980 (2447654) | 2447654..2447959 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| QDX30_RS11985 (2448067) | 2448067..2448777 | + | 711 | WP_001445899.1 | YnfC family lipoprotein | - |
| QDX30_RS11990 (2448780) | 2448780..2449340 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| QDX30_RS11995 (2449375) | 2449375..2449716 | - | 342 | WP_000705205.1 | DUF1283 family protein | - |
| QDX30_RS12000 (2449851) | 2449851..2450177 | + | 327 | WP_001314753.1 | YnfA family protein | - |
| QDX30_RS12005 (2450383) | 2450383..2451597 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| QDX30_RS12010 (2451609) | 2451609..2452628 | + | 1020 | WP_000836035.1 | Zn-dependent oxidoreductase | - |
| QDX30_RS12015 (2452816) | 2452816..2454096 | - | 1281 | WP_000876958.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| QDX30_RS12020 (2454131) | 2454131..2454382 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| QDX30_RS12025 (2454455) | 2454455..2456926 | - | 2472 | WP_000048342.1 | exonuclease | - |
| QDX30_RS12030 (2457019) | 2457019..2457210 | - | 192 | WP_063085989.1 | lysis protein YdfD | - |
| QDX30_RS12035 (2457207) | 2457207..2457395 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| QDX30_RS12040 (2457963) | 2457963..2458181 | - | 219 | WP_001171942.1 | protein YdfC | - |
| QDX30_RS12045 (2458211) | 2458211..2458339 | - | 129 | WP_000344964.1 | protein YdfB | - |
| QDX30_RS12050 (2458341) | 2458341..2458496 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| QDX30_RS12055 (2458663) | 2458663..2459070 | - | 408 | WP_063085987.1 | DNA-binding transcriptional dual regulator DicA | - |
| QDX30_RS12060 (2459154) | 2459154..2459384 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| QDX30_RS12065 (2459368) | 2459368..2459553 | + | 186 | Protein_2358 | hypothetical protein | - |
| QDX30_RS12070 (2459551) | 2459551..2459691 | + | 141 | Protein_2359 | DUF977 family protein | - |
| QDX30_RS12075 (2459688) | 2459688..2460177 | + | 490 | Protein_2360 | SAM-dependent methyltransferase | - |
| QDX30_RS12080 (2460655) | 2460655..2461076 | + | 422 | Protein_2361 | hypothetical protein | - |
| QDX30_RS12085 (2461732) | 2461732..2462802 | + | 1071 | Protein_2362 | ISNCY family transposase ISCARN112 | Transposase |
| QDX30_RS12090 (2462875) | 2462875..2463024 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| QDX30_RS12095 (2463486) | 2463486..2463818 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| QDX30_RS12100 (2464021) | 2464021..2464326 | - | 306 | WP_001326990.1 | protein YdfV | - |
| QDX30_RS12105 (2464351) | 2464351..2464590 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| QDX30_RS12110 (2464590) | 2464590..2464877 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| QDX30_RS12115 (2464949) | 2464949..2465104 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QDX30_RS12120 (2465321) | 2465321..2465572 | + | 252 | WP_000980994.1 | protein Rem | - |
| QDX30_RS12125 (2465639) | 2465639..2465917 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| QDX30_RS12130 (2465919) | 2465919..2466968 | + | 1050 | WP_063085032.1 | DUF968 domain-containing protein | - |
| QDX30_RS12135 (2466982) | 2466982..2467734 | + | 753 | WP_001047135.1 | antitermination protein | - |
| QDX30_RS12140 (2468012) | 2468012..2468101 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| QDX30_RS12145 (2468156) | 2468156..2468368 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QDX30_RS12150 (2468669) | 2468669..2468884 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| QDX30_RS12155 (2469248) | 2469248..2469418 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| QDX30_RS12160 (2469638) | 2469638..2469853 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| QDX30_RS12165 (2469858) | 2469858..2470169 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| QDX30_RS12170 (2470166) | 2470166..2470699 | + | 534 | WP_001092971.1 | lysozyme | - |
| QDX30_RS12175 (2470696) | 2470696..2471193 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| QDX30_RS12180 (2471555) | 2471555..2471767 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| QDX30_RS12185 (2471778) | 2471778..2471966 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| QDX30_RS12190 (2471969) | 2471969..2472034 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| QDX30_RS12195 (2472039) | 2472039..2472269 | + | 231 | WP_000720962.1 | protein YnfN | - |
| QDX30_RS12200 (2472441) | 2472441..2472614 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| QDX30_RS12205 (2472766) | 2472766..2473176 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| QDX30_RS12210 (2473234) | 2473234..2473467 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| QDX30_RS12215 (2473856) | 2473856..2474401 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| QDX30_RS12220 (2474376) | 2474376..2475857 | + | 1482 | Protein_2389 | phage terminase large subunit family protein | - |
| QDX30_RS12225 (2475859) | 2475859..2477676 | + | 1818 | Protein_2390 | tail fiber protein | - |
| QDX30_RS12230 (2477676) | 2477676..2478251 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| QDX30_RS12235 (2478349) | 2478349..2478939 | - | 591 | WP_192297632.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| QDX30_RS12240 (2479256) | 2479256..2479489 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| QDX30_RS12245 (2479558) | 2479558..2479671 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| QDX30_RS12250 (2480275) | 2480275..2481558 | + | 1284 | Protein_2395 | MHS family MFS transporter YdfJ | - |
| QDX30_RS12255 (2481648) | 2481648..2483108 | + | 1461 | WP_000527819.1 | mannitol dehydrogenase family protein | - |
| QDX30_RS12260 (2483144) | 2483144..2483347 | - | 204 | WP_063085277.1 | putative selenium delivery protein YdfZ | - |
| QDX30_RS12265 (2483524) | 2483524..2484210 | - | 687 | WP_192297634.1 | DNA-binding transcriptional regulator rspR | - |
| QDX30_RS12270 (2484299) | 2484299..2485045 | - | 747 | WP_000636575.1 | 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | VF |
| QDX30_RS12275 (2485182) | 2485182..2487227 | + | 2046 | WP_063085278.1 | peptidyl-dipeptidase Dcp | - |
| QDX30_RS12280 (2487272) | 2487272..2487352 | - | 81 | Protein_2401 | hypothetical protein | - |
| QDX30_RS12285 (2487592) | 2487592..2487984 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| QDX30_RS12290 (2488271) | 2488271..2489161 | + | 891 | WP_063085279.1 | diguanylate cyclase DgcZ | - |
| QDX30_RS12295 (2489276) | 2489276..2489380 | - | 105 | WP_212734532.1 | hypothetical protein | - |
| QDX30_RS12300 (2489380) | 2489380..2489475 | - | 96 | WP_000901367.1 | protein MgtS | - |
| QDX30_RS12305 (2489602) | 2489602..2490789 | - | 1188 | WP_063085280.1 | efflux MFS transporter YdeE | - |
| QDX30_RS12310 (2490984) | 2490984..2491883 | + | 900 | WP_053295902.1 | O-acetylserine/cysteine exporter | - |
| QDX30_RS12315 (2491928) | 2491928..2492626 | - | 699 | WP_000577190.1 | GntR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|