MGE detailed information
MGE type: Prophage MGE length: 46924 bp
Accession: NZ_CP122679 Location: 2472367..2519290 Organism: Escherichia coli strain ETEC4069 Replicon: chromosome
Accession: NZ_CP122679 Location: 2472367..2519290 Organism: Escherichia coli strain ETEC4069 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDW53_RS12150 (2468267) | 2468267..2469487 | + | 1221 | WP_000225257.1 | DNA-binding transcriptional repressor Mlc | - |
| QDW53_RS12155 (2469612) | 2469612..2470307 | + | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| QDW53_RS12160 (2470260) | 2470260..2471552 | - | 1293 | WP_071591524.1 | voltage-gated ClC-type chloride channel ClcB | - |
| QDW53_RS12165 (2471710) | 2471710..2472324 | - | 615 | WP_063085996.1 | Tat proofreading chaperone DmsD | - |
| QDW53_RS12170 (2472367) | 2472367..2473221 | - | 855 | WP_063085994.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| QDW53_RS12175 (2473223) | 2473223..2473840 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| QDW53_RS12180 (2473851) | 2473851..2476274 | - | 2424 | WP_074150141.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| QDW53_RS12185 (2476335) | 2476335..2478761 | - | 2427 | WP_000041646.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| QDW53_RS12190 (2478960) | 2478960..2479265 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| QDW53_RS12195 (2479373) | 2479373..2480083 | + | 711 | WP_001445899.1 | YnfC family lipoprotein | - |
| QDW53_RS12200 (2480086) | 2480086..2480646 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| QDW53_RS12205 (2480681) | 2480681..2481022 | - | 342 | WP_000705205.1 | DUF1283 family protein | - |
| QDW53_RS12210 (2481157) | 2481157..2481483 | + | 327 | WP_001314753.1 | YnfA family protein | - |
| QDW53_RS12215 (2481689) | 2481689..2482903 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| QDW53_RS12220 (2482915) | 2482915..2483934 | + | 1020 | WP_000836035.1 | Zn-dependent oxidoreductase | - |
| QDW53_RS12225 (2484122) | 2484122..2485402 | - | 1281 | WP_000876958.1 | Putative defective protein IntQ ; Integrase | Integrase |
| QDW53_RS12230 (2485437) | 2485437..2485688 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| QDW53_RS12235 (2485761) | 2485761..2488232 | - | 2472 | WP_000048342.1 | exonuclease | - |
| QDW53_RS12240 (2488325) | 2488325..2488516 | - | 192 | WP_063085989.1 | lysis protein YdfD | - |
| QDW53_RS12245 (2488513) | 2488513..2488701 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| QDW53_RS12250 (2489269) | 2489269..2489487 | - | 219 | WP_001171942.1 | protein YdfC | - |
| QDW53_RS12255 (2489517) | 2489517..2489645 | - | 129 | WP_000344964.1 | protein YdfB | - |
| QDW53_RS12260 (2489647) | 2489647..2489802 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| QDW53_RS12265 (2489969) | 2489969..2490376 | - | 408 | WP_063085987.1 | DNA-binding transcriptional dual regulator DicA | - |
| QDW53_RS12270 (2490460) | 2490460..2490690 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| QDW53_RS12275 (2490674) | 2490674..2490859 | + | 186 | Protein_2402 | hypothetical protein | - |
| QDW53_RS12280 (2490857) | 2490857..2490997 | + | 141 | Protein_2403 | DUF977 family protein | - |
| QDW53_RS12285 (2490994) | 2490994..2491483 | + | 490 | Protein_2404 | SAM-dependent methyltransferase | - |
| QDW53_RS12290 (2491961) | 2491961..2492382 | + | 422 | Protein_2405 | hypothetical protein | - |
| QDW53_RS12295 (2493038) | 2493038..2494060 | + | 1023 | Protein_2406 | ISNCY family transposase ISCARN112 | Transposase |
| QDW53_RS12300 (2494181) | 2494181..2494330 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| QDW53_RS12305 (2494792) | 2494792..2495124 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| QDW53_RS12310 (2495327) | 2495327..2495632 | - | 306 | WP_001326990.1 | protein YdfV | - |
| QDW53_RS12315 (2495657) | 2495657..2495896 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| QDW53_RS12320 (2495896) | 2495896..2496183 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| QDW53_RS12325 (2496255) | 2496255..2496410 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QDW53_RS12330 (2496627) | 2496627..2496878 | + | 252 | WP_000980994.1 | protein Rem | - |
| QDW53_RS12335 (2496945) | 2496945..2497223 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| QDW53_RS12340 (2497225) | 2497225..2498274 | + | 1050 | WP_063085032.1 | DUF968 domain-containing protein | - |
| QDW53_RS12345 (2498288) | 2498288..2499040 | + | 753 | WP_001047135.1 | antitermination protein | - |
| QDW53_RS12350 (2499318) | 2499318..2499407 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| QDW53_RS12355 (2499462) | 2499462..2499674 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QDW53_RS12360 (2499975) | 2499975..2500190 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| QDW53_RS12365 (2500554) | 2500554..2500724 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| QDW53_RS12370 (2500944) | 2500944..2501159 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| QDW53_RS12375 (2501164) | 2501164..2501475 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| QDW53_RS12380 (2501472) | 2501472..2502005 | + | 534 | WP_001092971.1 | lysozyme | - |
| QDW53_RS12385 (2502002) | 2502002..2502499 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| QDW53_RS12390 (2502861) | 2502861..2503073 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| QDW53_RS12395 (2503084) | 2503084..2503272 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| QDW53_RS12400 (2503275) | 2503275..2503340 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| QDW53_RS12405 (2503345) | 2503345..2503575 | + | 231 | WP_000720962.1 | protein YnfN | - |
| QDW53_RS12410 (2503747) | 2503747..2503920 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| QDW53_RS12415 (2504072) | 2504072..2504482 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| QDW53_RS12420 (2504540) | 2504540..2504773 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| QDW53_RS12425 (2505162) | 2505162..2505707 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| QDW53_RS12430 (2505682) | 2505682..2507163 | + | 1482 | Protein_2433 | phage terminase large subunit family protein | - |
| QDW53_RS12435 (2507165) | 2507165..2508982 | + | 1818 | Protein_2434 | tail fiber protein | - |
| QDW53_RS12440 (2508982) | 2508982..2509557 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| QDW53_RS12445 (2509655) | 2509655..2510245 | - | 591 | WP_192297632.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| QDW53_RS12450 (2510562) | 2510562..2510795 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| QDW53_RS12455 (2510864) | 2510864..2510977 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| QDW53_RS12460 (2511581) | 2511581..2512864 | + | 1284 | Protein_2439 | MHS family MFS transporter YdfJ | - |
| QDW53_RS12465 (2512954) | 2512954..2514414 | + | 1461 | WP_000527819.1 | mannitol dehydrogenase family protein | - |
| QDW53_RS12470 (2514450) | 2514450..2514653 | - | 204 | WP_063085277.1 | putative selenium delivery protein YdfZ | - |
| QDW53_RS12475 (2514830) | 2514830..2515516 | - | 687 | WP_192297634.1 | DNA-binding transcriptional regulator rspR | - |
| QDW53_RS12480 (2515605) | 2515605..2516351 | - | 747 | WP_000636575.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| QDW53_RS12485 (2516488) | 2516488..2518533 | + | 2046 | WP_063085278.1 | peptidyl-dipeptidase Dcp | - |
| QDW53_RS12490 (2518578) | 2518578..2518658 | - | 81 | Protein_2445 | hypothetical protein | - |
| QDW53_RS12495 (2518898) | 2518898..2519290 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| QDW53_RS12500 (2519577) | 2519577..2520467 | + | 891 | WP_063085279.1 | diguanylate cyclase DgcZ | - |
| QDW53_RS12505 (2520582) | 2520582..2520686 | - | 105 | WP_212734532.1 | hypothetical protein | - |
| QDW53_RS12510 (2520686) | 2520686..2520781 | - | 96 | WP_000901367.1 | protein MgtS | - |
| QDW53_RS12515 (2520908) | 2520908..2522095 | - | 1188 | WP_063085280.1 | efflux MFS transporter YdeE | - |
| QDW53_RS12520 (2522290) | 2522290..2523189 | + | 900 | WP_053295902.1 | O-acetylserine/cysteine exporter | - |
| QDW53_RS12525 (2523234) | 2523234..2523932 | - | 699 | WP_000577190.1 | GntR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|