MGE detailed information
MGE type: Prophage MGE length: 46125 bp
Accession: NZ_CP122648 Location: 2511008..2557132 Organism: Escherichia coli strain ETEC4077 Replicon: chromosome
Accession: NZ_CP122648 Location: 2511008..2557132 Organism: Escherichia coli strain ETEC4077 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDY56_RS12410 (2507257) | 2507257..2509683 | - | 2427 | WP_000041646.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| QDY56_RS12415 (2509882) | 2509882..2510187 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| QDY56_RS12420 (2510295) | 2510295..2511005 | + | 711 | WP_001445899.1 | YnfC family lipoprotein | - |
| QDY56_RS12425 (2511008) | 2511008..2511568 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| QDY56_RS12430 (2511603) | 2511603..2511944 | - | 342 | WP_000705205.1 | DUF1283 family protein | - |
| QDY56_RS12435 (2512079) | 2512079..2512405 | + | 327 | WP_001314753.1 | YnfA family protein | - |
| QDY56_RS12440 (2512611) | 2512611..2513825 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| QDY56_RS12445 (2513837) | 2513837..2514856 | + | 1020 | WP_000836035.1 | Zn-dependent oxidoreductase | - |
| QDY56_RS12450 (2515044) | 2515044..2516324 | - | 1281 | WP_000876958.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| QDY56_RS12455 (2516359) | 2516359..2516610 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| QDY56_RS12460 (2516683) | 2516683..2519154 | - | 2472 | WP_000048342.1 | exonuclease | - |
| QDY56_RS12465 (2519247) | 2519247..2519438 | - | 192 | WP_063085989.1 | lysis protein YdfD | - |
| QDY56_RS12470 (2519435) | 2519435..2519623 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| QDY56_RS12475 (2520191) | 2520191..2520409 | - | 219 | WP_001171942.1 | protein YdfC | - |
| QDY56_RS12480 (2520439) | 2520439..2520567 | - | 129 | WP_000344964.1 | protein YdfB | - |
| QDY56_RS12485 (2520569) | 2520569..2520724 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| QDY56_RS12490 (2520891) | 2520891..2521298 | - | 408 | WP_063085987.1 | DNA-binding transcriptional dual regulator DicA | - |
| QDY56_RS12495 (2521382) | 2521382..2521612 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| QDY56_RS12500 (2521596) | 2521596..2521781 | + | 186 | Protein_2448 | hypothetical protein | - |
| QDY56_RS12505 (2521779) | 2521779..2521919 | + | 141 | Protein_2449 | DUF977 family protein | - |
| QDY56_RS12510 (2521916) | 2521916..2522405 | + | 490 | Protein_2450 | SAM-dependent methyltransferase | - |
| QDY56_RS12515 (2522883) | 2522883..2523304 | + | 422 | Protein_2451 | hypothetical protein | - |
| QDY56_RS12520 (2523960) | 2523960..2524982 | + | 1023 | Protein_2452 | ISNCY family transposase ISCARN112 | Transposase |
| QDY56_RS12525 (2525103) | 2525103..2525252 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| QDY56_RS12530 (2525714) | 2525714..2526046 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| QDY56_RS12535 (2526249) | 2526249..2526554 | - | 306 | WP_001326990.1 | protein YdfV | - |
| QDY56_RS12540 (2526579) | 2526579..2526818 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| QDY56_RS12545 (2526818) | 2526818..2527105 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| QDY56_RS12550 (2527177) | 2527177..2527332 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QDY56_RS12555 (2527549) | 2527549..2527800 | + | 252 | WP_000980994.1 | protein Rem | - |
| QDY56_RS12560 (2527867) | 2527867..2528145 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| QDY56_RS12565 (2528147) | 2528147..2529196 | + | 1050 | WP_063085032.1 | DUF968 domain-containing protein | - |
| QDY56_RS12570 (2529210) | 2529210..2529962 | + | 753 | WP_001047135.1 | antitermination protein | - |
| QDY56_RS12575 (2530240) | 2530240..2530329 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| QDY56_RS12580 (2530384) | 2530384..2530596 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QDY56_RS12585 (2530897) | 2530897..2531112 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| QDY56_RS12590 (2531476) | 2531476..2531646 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| QDY56_RS12595 (2531866) | 2531866..2532081 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| QDY56_RS12600 (2532086) | 2532086..2532397 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| QDY56_RS12605 (2532394) | 2532394..2532927 | + | 534 | WP_001092971.1 | lysozyme | - |
| QDY56_RS12610 (2532924) | 2532924..2533421 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| QDY56_RS12615 (2533783) | 2533783..2533995 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| QDY56_RS12620 (2534006) | 2534006..2534194 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| QDY56_RS12625 (2534197) | 2534197..2534262 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| QDY56_RS12630 (2534267) | 2534267..2534497 | + | 231 | WP_000720962.1 | protein YnfN | - |
| QDY56_RS12635 (2534669) | 2534669..2534842 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| QDY56_RS12640 (2534994) | 2534994..2535404 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| QDY56_RS12645 (2535462) | 2535462..2535695 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| QDY56_RS12650 (2536084) | 2536084..2536629 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| QDY56_RS12655 (2536604) | 2536604..2538085 | + | 1482 | Protein_2479 | phage terminase large subunit family protein | - |
| QDY56_RS12660 (2538087) | 2538087..2539904 | + | 1818 | Protein_2480 | tail fiber protein | - |
| QDY56_RS12665 (2539904) | 2539904..2540479 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| QDY56_RS12670 (2540577) | 2540577..2541167 | - | 591 | WP_192297632.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| QDY56_RS12675 (2541484) | 2541484..2541717 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| QDY56_RS12680 (2541786) | 2541786..2541899 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| QDY56_RS12685 (2542503) | 2542503..2543786 | + | 1284 | Protein_2485 | MHS family MFS transporter YdfJ | - |
| QDY56_RS12690 (2543876) | 2543876..2545336 | + | 1461 | WP_000527819.1 | mannitol dehydrogenase family protein | - |
| QDY56_RS12695 (2545372) | 2545372..2545575 | - | 204 | WP_063085277.1 | putative selenium delivery protein YdfZ | - |
| QDY56_RS12700 (2545752) | 2545752..2546438 | - | 687 | WP_192297634.1 | DNA-binding transcriptional regulator rspR | - |
| QDY56_RS12705 (2546527) | 2546527..2547273 | - | 747 | WP_000636575.1 | 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | VF |
| QDY56_RS12710 (2547410) | 2547410..2549455 | + | 2046 | WP_063085278.1 | peptidyl-dipeptidase Dcp | - |
| QDY56_RS12715 (2549500) | 2549500..2549580 | - | 81 | Protein_2491 | hypothetical protein | - |
| QDY56_RS12720 (2549820) | 2549820..2550212 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| QDY56_RS12725 (2550491) | 2550491..2551381 | + | 891 | WP_063085279.1 | diguanylate cyclase DgcZ | - |
| QDY56_RS12730 (2551496) | 2551496..2551600 | - | 105 | WP_212734532.1 | hypothetical protein | - |
| QDY56_RS12735 (2551600) | 2551600..2551695 | - | 96 | WP_000901367.1 | protein MgtS | - |
| QDY56_RS12740 (2551822) | 2551822..2553009 | - | 1188 | WP_063085280.1 | efflux MFS transporter YdeE | - |
| QDY56_RS12745 (2553204) | 2553204..2554103 | + | 900 | WP_053295902.1 | O-acetylserine/cysteine exporter | - |
| QDY56_RS12750 (2554148) | 2554148..2554846 | - | 699 | WP_000577190.1 | GntR family transcriptional regulator | - |
| QDY56_RS12755 (2555045) | 2555045..2555356 | + | 312 | WP_000722571.1 | PTS sugar transporter subunit IIB | - |
| QDY56_RS12760 (2555471) | 2555471..2556793 | + | 1323 | WP_063085281.1 | PTS sugar transporter subunit IIC | - |
| QDY56_RS12765 (2556821) | 2556821..2557132 | + | 312 | WP_001314746.1 | PTS lactose/cellobiose transporter subunit IIA | - |
| QDY56_RS12770 (2557188) | 2557188..2558861 | + | 1674 | WP_063085282.1 | carbohydrate porin | - |
| QDY56_RS12775 (2558886) | 2558886..2560325 | + | 1440 | WP_063085283.1 | 6-phospho-beta-glucosidase | - |
| QDY56_RS12780 (2560382) | 2560382..2560600 | - | 219 | WP_000803531.1 | multiple antibiotic resistance protein MarB | - |
| QDY56_RS12785 (2560632) | 2560632..2561015 | - | 384 | WP_000091199.1 | MDR efflux pump AcrAB transcriptional activator MarA | - |
| QDY56_RS12790 (2561036) | 2561036..2561470 | - | 435 | WP_000843422.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|