MGE detailed information
MGE type: Prophage MGE length: 46925 bp
Accession: NZ_CP122643 Location: 2503016..2549940 Organism: Escherichia coli strain ETEC4079 Replicon: chromosome
Accession: NZ_CP122643 Location: 2503016..2549940 Organism: Escherichia coli strain ETEC4079 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDW55_RS12370 (2498916) | 2498916..2500136 | + | 1221 | WP_000225257.1 | DNA-binding transcriptional repressor Mlc | - |
| QDW55_RS12375 (2500261) | 2500261..2500956 | + | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| QDW55_RS12380 (2500909) | 2500909..2502201 | - | 1293 | WP_071591524.1 | voltage-gated ClC-type chloride channel ClcB | - |
| QDW55_RS12385 (2502359) | 2502359..2502973 | - | 615 | WP_063085996.1 | Tat proofreading chaperone DmsD | - |
| QDW55_RS12390 (2503016) | 2503016..2503870 | - | 855 | WP_063085994.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| QDW55_RS12395 (2503872) | 2503872..2504489 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| QDW55_RS12400 (2504500) | 2504500..2506923 | - | 2424 | WP_074150141.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| QDW55_RS12405 (2506984) | 2506984..2509410 | - | 2427 | WP_000041646.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| QDW55_RS12410 (2509609) | 2509609..2509914 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| QDW55_RS12415 (2510022) | 2510022..2510732 | + | 711 | WP_001445899.1 | YnfC family lipoprotein | - |
| QDW55_RS12420 (2510735) | 2510735..2511295 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| QDW55_RS12425 (2511330) | 2511330..2511671 | - | 342 | WP_000705205.1 | DUF1283 family protein | - |
| QDW55_RS12430 (2511806) | 2511806..2512132 | + | 327 | WP_001314753.1 | YnfA family protein | - |
| QDW55_RS12435 (2512338) | 2512338..2513552 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| QDW55_RS12440 (2513564) | 2513564..2514583 | + | 1020 | WP_000836035.1 | Zn-dependent oxidoreductase | - |
| QDW55_RS12445 (2514771) | 2514771..2516051 | - | 1281 | WP_000876958.1 | Putative defective protein IntQ ; Integrase | Integrase |
| QDW55_RS12450 (2516086) | 2516086..2516337 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| QDW55_RS12455 (2516410) | 2516410..2518881 | - | 2472 | WP_000048342.1 | exonuclease | - |
| QDW55_RS12460 (2518974) | 2518974..2519165 | - | 192 | WP_063085989.1 | lysis protein YdfD | - |
| QDW55_RS12465 (2519162) | 2519162..2519350 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| QDW55_RS12470 (2519918) | 2519918..2520136 | - | 219 | WP_001171942.1 | protein YdfC | - |
| QDW55_RS12475 (2520166) | 2520166..2520294 | - | 129 | WP_000344964.1 | protein YdfB | - |
| QDW55_RS12480 (2520296) | 2520296..2520451 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| QDW55_RS12485 (2520618) | 2520618..2521025 | - | 408 | WP_063085987.1 | DNA-binding transcriptional dual regulator DicA | - |
| QDW55_RS12490 (2521109) | 2521109..2521339 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| QDW55_RS12495 (2521323) | 2521323..2521508 | + | 186 | Protein_2448 | hypothetical protein | - |
| QDW55_RS12500 (2521506) | 2521506..2521646 | + | 141 | Protein_2449 | DUF977 family protein | - |
| QDW55_RS12505 (2521643) | 2521643..2522132 | + | 490 | Protein_2450 | SAM-dependent methyltransferase | - |
| QDW55_RS12510 (2522610) | 2522610..2523031 | + | 422 | Protein_2451 | hypothetical protein | - |
| QDW55_RS12515 (2523687) | 2523687..2524709 | + | 1023 | Protein_2452 | ISNCY family transposase ISCARN112 | Transposase |
| QDW55_RS12520 (2524830) | 2524830..2524979 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| QDW55_RS12525 (2525441) | 2525441..2525773 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| QDW55_RS12530 (2525976) | 2525976..2526281 | - | 306 | WP_001326990.1 | protein YdfV | - |
| QDW55_RS12535 (2526306) | 2526306..2526545 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| QDW55_RS12540 (2526545) | 2526545..2526832 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| QDW55_RS12545 (2526904) | 2526904..2527059 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QDW55_RS12550 (2527276) | 2527276..2527527 | + | 252 | WP_000980994.1 | protein Rem | - |
| QDW55_RS12555 (2527594) | 2527594..2527872 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| QDW55_RS12560 (2527874) | 2527874..2528923 | + | 1050 | WP_063085032.1 | DUF968 domain-containing protein | - |
| QDW55_RS12565 (2528937) | 2528937..2529689 | + | 753 | WP_001047135.1 | antitermination protein | - |
| QDW55_RS12570 (2529967) | 2529967..2530056 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| QDW55_RS12575 (2530111) | 2530111..2530323 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QDW55_RS12580 (2530624) | 2530624..2530839 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| QDW55_RS12585 (2531203) | 2531203..2531373 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| QDW55_RS12590 (2531593) | 2531593..2531808 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| QDW55_RS12595 (2531813) | 2531813..2532124 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| QDW55_RS12600 (2532121) | 2532121..2532654 | + | 534 | WP_001092971.1 | lysozyme | - |
| QDW55_RS12605 (2532651) | 2532651..2533148 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| QDW55_RS12610 (2533511) | 2533511..2533723 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| QDW55_RS12615 (2533734) | 2533734..2533922 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| QDW55_RS12620 (2533925) | 2533925..2533990 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| QDW55_RS12625 (2533995) | 2533995..2534225 | + | 231 | WP_000720962.1 | protein YnfN | - |
| QDW55_RS12630 (2534397) | 2534397..2534570 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| QDW55_RS12635 (2534722) | 2534722..2535132 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| QDW55_RS12640 (2535190) | 2535190..2535423 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| QDW55_RS12645 (2535812) | 2535812..2536357 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| QDW55_RS12650 (2536332) | 2536332..2537813 | + | 1482 | Protein_2479 | phage terminase large subunit family protein | - |
| QDW55_RS12655 (2537815) | 2537815..2539632 | + | 1818 | Protein_2480 | tail fiber protein | - |
| QDW55_RS12660 (2539632) | 2539632..2540207 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| QDW55_RS12665 (2540305) | 2540305..2540895 | - | 591 | WP_192297632.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| QDW55_RS12670 (2541212) | 2541212..2541445 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| QDW55_RS12675 (2541514) | 2541514..2541627 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| QDW55_RS12680 (2542231) | 2542231..2543514 | + | 1284 | Protein_2485 | MHS family MFS transporter YdfJ | - |
| QDW55_RS12685 (2543604) | 2543604..2545064 | + | 1461 | WP_000527819.1 | mannitol dehydrogenase family protein | - |
| QDW55_RS12690 (2545100) | 2545100..2545303 | - | 204 | WP_063085277.1 | putative selenium delivery protein YdfZ | - |
| QDW55_RS12695 (2545480) | 2545480..2546166 | - | 687 | WP_192297634.1 | DNA-binding transcriptional regulator rspR | - |
| QDW55_RS12700 (2546255) | 2546255..2547001 | - | 747 | WP_000636575.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| QDW55_RS12705 (2547138) | 2547138..2549183 | + | 2046 | WP_063085278.1 | peptidyl-dipeptidase Dcp | - |
| QDW55_RS12710 (2549228) | 2549228..2549308 | - | 81 | Protein_2491 | hypothetical protein | - |
| QDW55_RS12715 (2549548) | 2549548..2549940 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| QDW55_RS12720 (2550219) | 2550219..2551109 | + | 891 | WP_063085279.1 | diguanylate cyclase DgcZ | - |
| QDW55_RS12725 (2551224) | 2551224..2551328 | - | 105 | WP_212734532.1 | hypothetical protein | - |
| QDW55_RS12730 (2551328) | 2551328..2551423 | - | 96 | WP_000901367.1 | protein MgtS | - |
| QDW55_RS12735 (2551550) | 2551550..2552737 | - | 1188 | WP_063085280.1 | efflux MFS transporter YdeE | - |
| QDW55_RS12740 (2552932) | 2552932..2553831 | + | 900 | WP_053295902.1 | O-acetylserine/cysteine exporter | - |
| QDW55_RS12745 (2553876) | 2553876..2554574 | - | 699 | WP_000577190.1 | GntR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|