MGE detailed information
MGE type: Prophage MGE length: 60882 bp
Accession: NZ_CP121356 Location: 2569589..2630470 Organism: Escherichia coli strain rl0044 Replicon: chromosome
Accession: NZ_CP121356 Location: 2569589..2630470 Organism: Escherichia coli strain rl0044 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P9060_RS12865 (2565488) | 2565488..2566708 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| P9060_RS12870 (2566833) | 2566833..2567528 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| P9060_RS12875 (2567481) | 2567481..2568773 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| P9060_RS12880 (2568932) | 2568932..2569546 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| P9060_RS12885 (2569589) | 2569589..2570443 | - | 855 | WP_000526477.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| P9060_RS12890 (2570445) | 2570445..2571062 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| P9060_RS12895 (2571073) | 2571073..2573496 | - | 2424 | WP_074151088.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| P9060_RS12900 (2573557) | 2573557..2575983 | - | 2427 | WP_001761878.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| P9060_RS12905 (2576182) | 2576182..2576487 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| P9060_RS12910 (2576595) | 2576595..2577305 | + | 711 | WP_072104773.1 | YnfC family lipoprotein | - |
| P9060_RS12915 (2577308) | 2577308..2577868 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| P9060_RS12920 (2577903) | 2577903..2578244 | - | 342 | WP_000705209.1 | DUF1283 family protein | - |
| P9060_RS12925 (2578379) | 2578379..2578705 | + | 327 | WP_001295395.1 | YnfA family protein | - |
| P9060_RS12930 (2578911) | 2578911..2580125 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| P9060_RS12935 (2580137) | 2580137..2581156 | + | 1020 | WP_000836059.1 | Zn-dependent oxidoreductase | - |
| P9060_RS12940 (2581344) | 2581344..2582624 | - | 1281 | WP_000877005.1 | Putative defective protein IntQ ; Integrase | Integrase |
| P9060_RS12945 (2582659) | 2582659..2582910 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| P9060_RS12950 (2582983) | 2582983..2585454 | - | 2472 | WP_032166914.1 | exonuclease | - |
| P9060_RS12955 (2585547) | 2585547..2585738 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| P9060_RS12960 (2585735) | 2585735..2585923 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| P9060_RS12965 (2586481) | 2586481..2586699 | - | 219 | WP_001171942.1 | protein YdfC | - |
| P9060_RS12970 (2586729) | 2586729..2586857 | - | 129 | WP_000344964.1 | protein YdfB | - |
| P9060_RS12975 (2586859) | 2586859..2587014 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| P9060_RS12980 (2587181) | 2587181..2587588 | - | 408 | WP_000448565.1 | DNA-binding transcriptional dual regulator DicA | - |
| P9060_RS12985 (2587672) | 2587672..2587902 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| P9060_RS12990 (2587886) | 2587886..2588407 | + | 522 | WP_000705358.1 | toxin YdaT family protein | - |
| P9060_RS12995 (2588388) | 2588388..2589353 | + | 966 | WP_000054512.1 | hypothetical protein | - |
| P9060_RS13000 (2589394) | 2589394..2589816 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| P9060_RS13005 (2589813) | 2589813..2590302 | + | 490 | Protein_2545 | class I SAM-dependent methyltransferase | - |
| P9060_RS13010 (2590780) | 2590780..2591201 | + | 422 | Protein_2546 | hypothetical protein | - |
| P9060_RS13015 (2591857) | 2591857..2592879 | + | 1023 | Protein_2547 | ISNCY family transposase ISCARN112 | Transposase |
| P9060_RS13020 (2593000) | 2593000..2593149 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| P9060_RS13025 (2593586) | 2593586..2593918 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| P9060_RS13030 (2594121) | 2594121..2594426 | - | 306 | WP_001326990.1 | protein YdfV | - |
| P9060_RS13035 (2594451) | 2594451..2594690 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| P9060_RS13040 (2594690) | 2594690..2594977 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| P9060_RS13045 (2595049) | 2595049..2595204 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| P9060_RS13050 (2595421) | 2595421..2595672 | + | 252 | WP_000980994.1 | protein Rem | - |
| P9060_RS13055 (2595739) | 2595739..2596017 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| P9060_RS13060 (2596019) | 2596019..2597068 | + | 1050 | WP_001424248.1 | DUF968 domain-containing protein | - |
| P9060_RS13065 (2597082) | 2597082..2597834 | + | 753 | WP_001047136.1 | antitermination protein | - |
| P9060_RS13070 (2598112) | 2598112..2598201 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| P9060_RS13075 (2598256) | 2598256..2598468 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| P9060_RS13080 (2598769) | 2598769..2598984 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| P9060_RS13085 (2599348) | 2599348..2599518 | - | 171 | WP_001405948.1 | putative zinc-binding protein YnfU | - |
| P9060_RS13090 (2599738) | 2599738..2599953 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| P9060_RS13095 (2599958) | 2599958..2600269 | + | 312 | WP_000189915.1 | YdfR family protein | - |
| P9060_RS13100 (2600266) | 2600266..2600799 | + | 534 | WP_001092971.1 | lysozyme | - |
| P9060_RS13105 (2600796) | 2600796..2601293 | + | 498 | WP_001071766.1 | DUF2514 domain-containing protein | - |
| P9060_RS13110 (2601657) | 2601657..2601869 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| P9060_RS13115 (2601880) | 2601880..2602068 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| P9060_RS13120 (2602071) | 2602071..2602136 | + | 66 | WP_122134696.1 | small protein YnfR | - |
| P9060_RS13125 (2602141) | 2602141..2602371 | + | 231 | WP_000720962.1 | protein YnfN | - |
| P9060_RS13130 (2602543) | 2602543..2602716 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| P9060_RS13135 (2602868) | 2602868..2603278 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| P9060_RS13140 (2603336) | 2603336..2603569 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| P9060_RS13145 (2603958) | 2603958..2604503 | + | 546 | WP_000453576.1 | DNA-packaging protein | - |
| P9060_RS13150 (2604478) | 2604478..2606403 | + | 1926 | WP_001027314.1 | phage terminase large subunit family protein | - |
| P9060_RS13155 (2606400) | 2606400..2606606 | + | 207 | WP_000198153.1 | gpW family protein | - |
| P9060_RS13160 (2606603) | 2606603..2608204 | + | 1602 | WP_015675225.1 | phage portal protein | - |
| P9060_RS13165 (2608185) | 2608185..2609504 | + | 1320 | WP_000123321.1 | S49 family peptidase | - |
| P9060_RS13170 (2609514) | 2609514..2609846 | + | 333 | WP_001299443.1 | head decoration protein | - |
| P9060_RS13175 (2609902) | 2609902..2610927 | + | 1026 | WP_000063274.1 | major capsid protein | - |
| P9060_RS13180 (2610969) | 2610969..2611367 | + | 399 | WP_000158861.1 | DNA-packaging protein FI | - |
| P9060_RS13185 (2611379) | 2611379..2611732 | + | 354 | WP_000752963.1 | head-tail joining protein | - |
| P9060_RS13190 (2611744) | 2611744..2612322 | + | 579 | WP_000985129.1 | phage tail protein | - |
| P9060_RS13195 (2612319) | 2612319..2612714 | + | 396 | WP_000683142.1 | phage minor tail U family protein | - |
| P9060_RS13200 (2612722) | 2612722..2613462 | + | 741 | WP_015675224.1 | phage tail protein | - |
| P9060_RS13205 (2613478) | 2613478..2613900 | + | 423 | WP_000479164.1 | phage minor tail protein G | - |
| P9060_RS13210 (2613882) | 2613882..2614316 | + | 435 | WP_000459471.1 | phage tail assembly protein T | - |
| P9060_RS13215 (2614309) | 2614309..2616870 | + | 2562 | WP_000840341.1 | phage tail tape measure protein | - |
| P9060_RS13220 (2616867) | 2616867..2617196 | + | 330 | WP_000847342.1 | phage tail protein | - |
| P9060_RS13225 (2617196) | 2617196..2617894 | + | 699 | WP_001152612.1 | phage minor tail protein L | - |
| P9060_RS13230 (2617899) | 2617899..2618642 | + | 744 | WP_000140768.1 | C40 family peptidase | - |
| P9060_RS13235 (2618639) | 2618639..2619211 | + | 573 | WP_000847673.1 | tail assembly protein | - |
| P9060_RS13240 (2619272) | 2619272..2622751 | + | 3480 | WP_000515295.1 | host specificity protein J | - |
| P9060_RS13245 (2622819) | 2622819..2623418 | + | 600 | WP_001233110.1 | Outer membrane protein X | VF |
| P9060_RS13250 (2623483) | 2623483..2626590 | + | 3108 | WP_000279160.1 | phage tail protein | - |
| P9060_RS13255 (2626590) | 2626590..2627165 | + | 576 | WP_000885595.1 | tail fiber assembly protein | - |
| P9060_RS13260 (2627263) | 2627263..2627853 | - | 591 | WP_000086522.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| P9060_RS13265 (2628170) | 2628170..2628403 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| P9060_RS13270 (2628472) | 2628472..2628585 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| P9060_RS13275 (2629187) | 2629187..2630470 | + | 1284 | Protein_2599 | MHS family MFS transporter YdfJ | - |
| P9060_RS13280 (2630559) | 2630559..2632019 | + | 1461 | WP_278242722.1 | mannitol dehydrogenase family protein | - |
| P9060_RS13285 (2632055) | 2632055..2632258 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| P9060_RS13290 (2632435) | 2632435..2633121 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| P9060_RS13295 (2633210) | 2633210..2633956 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|