MGE detailed information

MGE type: Integrative_Conjugative_Elements        MGE length: 132947 bp
Accession: NZ_CP120399        Location: 4115468..4248414         Organism: Salmonella enterica subsp. enterica serovar Typhi strain 314-2017_CO_03       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PVA79_RS20225 (PVA79_20220) 4111267..4112568 + 1302 WP_000637594.1 anaerobic C4-dicarboxylate transporter DcuA -
PVA79_RS20230 (PVA79_20225) 4112689..4113036 + 348 WP_000887832.1 divalent cation tolerance protein CutA -
PVA79_RS20235 (PVA79_20230) 4113012..4114715 + 1704 WP_000068881.1 protein-disulfide reductase DsbD -
PVA79_RS20240 (PVA79_20235) 4114752..4115327 + 576 WP_001188506.1 transcriptional regulator -
PVA79_RS20250 (PVA79_20245) 4115678..4116937 + 1260 WP_000954536.1 Prophage integrase IntS ; Integrase Integrase
PVA79_RS20255 (PVA79_20250) 4117248..4118531 + 1284 WP_000975154.1 SH3 domain-containing protein -
PVA79_RS20260 (PVA79_20255) 4118616..4118885 + 270 Protein_3965 integrase -
PVA79_RS20265 (PVA79_20260) 4119512..4120294 - 783 WP_000511749.1 hypothetical protein ; Integrase Integrase
PVA79_RS20270 (PVA79_20265) 4120564..4120758 + 195 WP_162009227.1 hypothetical protein -
PVA79_RS20275 (PVA79_20270) 4121151..4121372 - 222 WP_000193665.1 helix-turn-helix transcriptional regulator -
PVA79_RS20280 (PVA79_20275) 4121369..4121830 - 462 WP_000246267.1 hypothetical protein -
PVA79_RS20285 (PVA79_20280) 4122377..4124050 + 1674 WP_010989301.1 hypothetical protein -
PVA79_RS20290 (PVA79_20285) 4124131..4126416 + 2286 WP_010989300.1 hypothetical protein -
PVA79_RS20295 (PVA79_20290) 4126720..4126971 + 252 WP_024131240.1 hypothetical protein -
PVA79_RS20300 (PVA79_20295) 4127053..4127505 + 453 WP_000434168.1 hypothetical protein -
PVA79_RS20305 (PVA79_20300) 4127685..4128173 - 489 WP_000622308.1 GNAT family N-acetyltransferase Toxin Detail
PVA79_RS20310 (PVA79_20305) 4128170..4128463 - 294 WP_001143724.1 DUF1778 domain-containing protein Antitoxin Detail
PVA79_RS20315 (PVA79_20310) 4128890..4129903 - 1014 WP_000449622.1 Tyrosine recombinase XerC ; Integrase Integrase
PVA79_RS20320 (PVA79_20315) 4130067..4131656 - 1590 WP_000488995.1 TraI domain-containing protein -
PVA79_RS20325 (PVA79_20320) 4131640..4133151 - 1512 WP_001120833.1 UvrD-helicase domain-containing protein -
PVA79_RS20330 (PVA79_20325) 4134005..4134544 + 540 WP_001210944.1 Vi polysaccharide biosynthesis regulator TviA -
PVA79_RS20335 (PVA79_20330) 4134789..4136066 + 1278 WP_000466893.1 UDP-N-acetyl-D-glucosamine 6-dehydrogenase VF
PVA79_RS20340 (PVA79_20335) 4136069..4137115 + 1047 WP_000127915.1 UDP-N-acetylglucosamine 4-epimerase VF
PVA79_RS20345 (PVA79_20340) 4137139..4139634 + 2496 WP_010989299.1 hypothetical protein VF
PVA79_RS20350 (PVA79_20345) 4139634..4141370 + 1737 WP_000632616.1 hypothetical protein VF
PVA79_RS20355 (PVA79_20350) 4141415..4142482 + 1068 WP_000720235.1 hypothetical protein VF
PVA79_RS20360 (PVA79_20355) 4142492..4143286 + 795 WP_001023498.1 hypothetical protein VF
PVA79_RS20365 (PVA79_20360) 4143312..4144007 + 696 WP_000467404.1 Polysialic acid transport ATP-binding protein KpsT VF
PVA79_RS20370 (PVA79_20365) 4144030..4145334 + 1305 WP_000431675.1 hypothetical protein VF
PVA79_RS20375 (PVA79_20370) 4145354..4147324 + 1971 WP_000052242.1 hypothetical protein VF
PVA79_RS20380 (PVA79_20375) 4147626..4148372 - 747 WP_000354257.1 class I SAM-dependent methyltransferase -
PVA79_RS20385 (PVA79_20380) 4148372..4149262 - 891 WP_001681808.1 class I SAM-dependent methyltransferase -
PVA79_RS20390 (PVA79_20385) 4149273..4149530 - 258 WP_001681810.1 YjhX family toxin -
PVA79_RS20395 (PVA79_20390) 4149832..4149942 - 111 Protein_3992 autoinducer 2 ABC transporter substrate-binding protein -
PVA79_RS20400 (PVA79_20395) 4150177..4150521 + 345 Protein_3993 translesion error-prone DNA polymerase V autoproteolytic subunit -
PVA79_RS20405 (PVA79_20400) 4150637..4151662 - 1026 WP_000027757.1 Tyrosine recombinase XerC ; Integrase Integrase
PVA79_RS20410 (PVA79_20405) 4151666..4152298 - 633 WP_000052560.1 helix-turn-helix domain-containing protein -
PVA79_RS20415 (PVA79_20410) 4152415..4152657 + 243 WP_000102106.1 Rha family transcriptional regulator -
PVA79_RS20420 (PVA79_20415) 4152690..4153199 + 510 WP_000460852.1 phage regulatory CII family protein -
PVA79_RS20425 (PVA79_20420) 4153207..4153407 + 201 WP_000956167.1 DUF2724 domain-containing protein -
PVA79_RS20430 (PVA79_20425) 4153371..4153712 + 342 WP_000963479.1 DUF5347 family protein -
PVA79_RS20435 (PVA79_20430) 4153780..4154013 + 234 WP_001244240.1 DUF2732 family protein -
PVA79_RS20440 (PVA79_20435) 4154013..4154240 + 228 WP_000785510.1 TraR/DksA family transcriptional regulator -
PVA79_RS20445 (PVA79_20440) 4154237..4154821 + 585 WP_001090717.1 exonuclease domain-containing protein -
PVA79_RS20450 (PVA79_20445) 4154818..4155678 + 861 WP_000104130.1 DNA adenine methylase -
PVA79_RS20455 (PVA79_20450) 4155669..4158138 + 2470 Protein_4004 replication endonuclease -
PVA79_RS20460 (PVA79_20455) 4158306..4158494 + 189 WP_001154438.1 hypothetical protein -
PVA79_RS20465 (PVA79_20460) 4158506..4158739 + 234 WP_001217561.1 DinI family protein -
PVA79_RS20470 (PVA79_20465) 4158835..4159053 + 219 WP_000835188.1 hypothetical protein -
PVA79_RS20475 (PVA79_20470) 4159063..4160127 + 1065 WP_000829584.1 hypothetical protein -
PVA79_RS20480 (PVA79_20475) 4160124..4161188 + 1065 WP_000789323.1 hypothetical protein -
PVA79_RS20485 (PVA79_20480) 4161208..4161903 + 696 WP_000080839.1 hypothetical protein -
PVA79_RS20490 (PVA79_20485) 4161952..4162995 - 1044 WP_001681813.1 phage portal protein -
PVA79_RS20495 (PVA79_20490) 4162995..4164761 - 1767 WP_001098453.1 terminase ATPase subunit family protein -
PVA79_RS20500 (PVA79_20495) 4164904..4165737 + 834 WP_000216272.1 GPO family capsid scaffolding protein -
PVA79_RS20505 (PVA79_20500) 4165754..4166818 + 1065 WP_000730751.1 phage major capsid protein, P2 family -
PVA79_RS20510 (PVA79_20505) 4166822..4167472 + 651 WP_000059175.1 terminase endonuclease subunit -
PVA79_RS20515 (PVA79_20510) 4167566..4168030 + 465 WP_000673540.1 head completion/stabilization protein -
PVA79_RS20520 (PVA79_20515) 4168030..4168233 + 204 WP_000868184.1 tail protein X -
PVA79_RS20525 (PVA79_20520) 4168237..4168452 + 216 WP_000171566.1 HP1 family phage holin -
PVA79_RS20530 (PVA79_20525) 4168433..4168942 + 510 WP_001097942.1 lysozyme -
PVA79_RS20535 (PVA79_20530) 4168947..4169324 + 378 WP_048663627.1 DNZ54_00345 family protein -
PVA79_RS20540 (PVA79_20535) 4169321..4169749 + 429 WP_024131238.1 Rz-like lysis system protein LysB -
PVA79_RS20545 (PVA79_20540) 4169634..4169882 + 249 WP_223229656.1 Rz1-like lysis system protein LysC -
PVA79_RS20550 (PVA79_20545) 4169845..4170276 + 432 WP_001039966.1 phage tail protein -
PVA79_RS20555 (PVA79_20550) 4170269..4170715 + 447 WP_000343944.1 phage virion morphogenesis protein -
PVA79_RS20560 (PVA79_20555) 4170784..4171362 + 579 WP_000993749.1 phage baseplate assembly protein V -
PVA79_RS20565 (PVA79_20560) 4171359..4171718 + 360 WP_000177408.1 GPW/gp25 family protein -
PVA79_RS20570 (PVA79_20565) 4171705..4172613 + 909 WP_000268327.1 baseplate assembly protein -
PVA79_RS20575 (PVA79_20570) 4172606..4173211 + 606 WP_001086816.1 phage tail protein I -
PVA79_RS20580 (PVA79_20575) 4173208..4174827 + 1620 WP_000104806.1 phage tail protein -
PVA79_RS20585 (PVA79_20580) 4174834..4175241 + 408 WP_000006337.1 tail fiber assembly protein -
PVA79_RS20590 (PVA79_20585) 4175439..4176161 - 723 WP_000161708.1 Guanine nucleotide exchange factor SopE VF
PVA79_RS20595 (PVA79_20590) 4176372..4176593 + 222 Protein_4032 helix-turn-helix domain-containing protein -
PVA79_RS20600 (PVA79_20595) 4176696..4177868 + 1173 WP_000046101.1 phage tail sheath protein -
PVA79_RS20605 (PVA79_20600) 4177878..4178393 + 516 WP_001207653.1 phage major tail tube protein -
PVA79_RS20610 (PVA79_20605) 4178448..4178750 + 303 WP_001280965.1 phage tail assembly protein -
PVA79_RS20615 (PVA79_20610) 4178765..4178884 + 120 WP_000763315.1 GpE family phage tail protein -
PVA79_RS20620 (PVA79_20615) 4178877..4181657 + 2781 WP_001282813.1 phage tail tape measure protein -
PVA79_RS20625 (PVA79_20620) 4181657..4182142 + 486 WP_000980405.1 phage tail protein -
PVA79_RS20630 (PVA79_20625) 4182139..4183239 + 1101 WP_001011750.1 phage late control D family protein -
PVA79_RS20635 (PVA79_20630) 4183307..4183525 + 219 WP_001775272.1 ogr/Delta-like zinc finger family protein -
PVA79_RS20640 (PVA79_20635) 4183612..4183989 - 378 WP_001039750.1 hypothetical protein -
PVA79_RS20645 (PVA79_20640) 4184123..4184209 + 87 Protein_4042 peptidase -
PVA79_RS20650 (PVA79_20645) 4184209..4185483 + 1275 WP_000457555.1 Y-family DNA polymerase -
PVA79_RS20655 (PVA79_20650) 4185615..4185884 + 270 WP_001222413.1 hypothetical protein -
PVA79_RS20660 (PVA79_20655) 4185984..4186310 - 327 WP_000911568.1 DUF3085 domain-containing protein -
PVA79_RS20665 (PVA79_20660) 4186385..4187284 - 900 WP_000022217.1 hypothetical protein -
PVA79_RS20670 (PVA79_20665) 4187358..4188266 - 909 WP_000881183.1 hypothetical protein -
PVA79_RS20675 (PVA79_20670) 4188338..4190287 - 1950 WP_001097965.1 zincin-like metallopeptidase domain-containing protein -
PVA79_RS20680 (PVA79_20675) 4190376..4190834 - 459 WP_000115421.1 hypothetical protein -
PVA79_RS20685 (PVA79_20680) 4190912..4191208 - 297 WP_000968700.1 hypothetical protein -
PVA79_RS20690 (PVA79_20685) 4191205..4191657 - 453 WP_000979718.1 hypothetical protein -
PVA79_RS20695 (PVA79_20690) 4191675..4191884 - 210 WP_000018145.1 hypothetical protein -
PVA79_RS20700 (PVA79_20695) 4192255..4192635 - 381 WP_001103837.1 hypothetical protein -
PVA79_RS20705 (PVA79_20700) 4192731..4193033 - 303 WP_001020123.1 hypothetical protein -
PVA79_RS20710 (PVA79_20705) 4193757..4194677 - 921 WP_000907593.1 hypothetical protein ; Integrase Integrase
PVA79_RS20715 (PVA79_20710) 4195943..4196485 + 543 WP_010989295.1 DUF1062 domain-containing protein -
PVA79_RS20720 (PVA79_20715) 4196696..4197337 - 642 WP_000502502.1 ParB N-terminal domain-containing protein -
PVA79_RS20725 (PVA79_20720) 4197322..4198569 - 1248 WP_001283066.1 phosphoadenosine phosphosulfate reductase -
PVA79_RS20730 (PVA79_20725) 4198857..4199216 + 360 WP_010989293.1 hypothetical protein -
PVA79_RS20735 (PVA79_20730) 4199440..4199829 + 390 WP_000993574.1 hypothetical protein -
PVA79_RS20740 (PVA79_20735) 4199865..4201370 - 1506 WP_000213770.1 conjugal transfer protein TraG N-terminal domain-containing protein -
PVA79_RS20745 (PVA79_20740) 4201703..4203100 - 1398 WP_014341560.1 integrating conjugative element protein -
PVA79_RS20750 (PVA79_20745) 4203148..4204116 - 969 WP_000838927.1 TIGR03756 family integrating conjugative element protein -
PVA79_RS20755 (PVA79_20750) 4204113..4204505 - 393 WP_285238760.1 TIGR03757 family integrating conjugative element protein -
PVA79_RS20760 (PVA79_20755) 4204660..4205046 - 387 WP_000054770.1 hypothetical protein -
PVA79_RS20765 (PVA79_20760) 4205201..4207883 - 2683 Protein_4066 conjugative transfer ATPase -
PVA79_RS20770 (PVA79_20765) 4208006..4208455 - 450 WP_000244536.1 TIGR03751 family conjugal transfer lipoprotein -
PVA79_RS20775 (PVA79_20770) 4208442..4209920 - 1479 WP_001165842.1 TIGR03752 family integrating conjugative element protein -
PVA79_RS20780 (PVA79_20775) 4209910..4210809 - 900 WP_001240640.1 TIGR03749 family integrating conjugative element protein -
PVA79_RS20785 (PVA79_20780) 4210809..4211462 - 654 WP_000086082.1 TIGR03746 family integrating conjugative element protein -
PVA79_RS20790 (PVA79_20785) 4211459..4211833 - 375 WP_000848326.1 TIGR03750 family conjugal transfer protein -
PVA79_RS20795 (PVA79_20790) 4211843..4212208 - 366 WP_223228898.1 TIGR03745 family integrating conjugative element membrane protein -
PVA79_RS20800 (PVA79_20795) 4212235..4212468 - 234 WP_015899494.1 TIGR03758 family integrating conjugative element protein -
PVA79_RS20805 (PVA79_20800) 4212474..4212728 - 255 WP_000252871.1 RAQPRD family integrative conjugative element protein -
PVA79_RS20810 (PVA79_20805) 4212965..4213723 - 759 WP_010989289.1 TIGR03747 family integrating conjugative element membrane protein -
PVA79_RS20815 (PVA79_20810) 4213720..4215810 - 2091 WP_000071290.1 type IV conjugative transfer system coupling protein TraD -
PVA79_RS20820 (PVA79_20815) 4215830..4216399 - 570 WP_000626967.1 restriction endonuclease -
PVA79_RS20825 (PVA79_20820) 4216409..4216909 - 501 WP_000253629.1 integrating conjugative element protein -
PVA79_RS20830 (PVA79_20825) 4216945..4217631 - 687 WP_000013624.1 hypothetical protein VF
PVA79_RS20835 (PVA79_20830) 4217610..4218296 - 687 WP_223229647.1 TIGR03759 family integrating conjugative element protein -
PVA79_RS20840 (PVA79_20835) 4218369..4219283 - 915 WP_000214158.1 hypothetical protein -
PVA79_RS20845 (PVA79_20840) 4219240..4219602 - 363 WP_001149494.1 hypothetical protein -
PVA79_RS20850 (PVA79_20845) 4219790..4220665 - 876 WP_000994659.1 hypothetical protein -
PVA79_RS20855 (PVA79_20850) 4220877..4221344 - 468 WP_000455463.1 hypothetical protein -
PVA79_RS20860 (PVA79_20855) 4221441..4222592 - 1152 WP_000089603.1 Tyrosine recombinase XerC ; Integrase Integrase
PVA79_RS20865 (PVA79_20860) 4222940..4224247 - 1308 WP_000744276.1 hypothetical protein VF
PVA79_RS20870 (PVA79_20865) 4224244..4224906 - 663 WP_000218700.1 hypothetical protein VF
PVA79_RS20875 (PVA79_20870) 4224903..4225346 - 444 WP_223228896.1 hypothetical protein VF
PVA79_RS20880 (PVA79_20875) 4225389..4225985 - 597 WP_024131234.1 hypothetical protein VF
PVA79_RS20885 (PVA79_20880) 4226024..4227109 - 1086 WP_000074784.1 hypothetical protein VF
PVA79_RS20890 (PVA79_20885) 4227106..4228821 - 1716 WP_001289222.1 hypothetical protein VF
PVA79_RS20895 (PVA79_20890) 4228831..4229211 - 381 WP_014341558.1 hypothetical protein VF
PVA79_RS20900 (PVA79_20895) 4229399..4230685 - 1287 WP_000763621.1 hypothetical protein VF
PVA79_RS20905 (PVA79_20900) 4230687..4231025 - 339 WP_048657783.1 Outer membrane lipoprotein BfpB VF
PVA79_RS20910 (PVA79_20905) 4230991..4231926 - 936 WP_049783585.1 hypothetical protein VF
PVA79_RS20915 (PVA79_20910) 4232397..4232816 - 420 WP_000539682.1 hypothetical protein VF
PVA79_RS20920 (PVA79_20915) 4232819..4234063 - 1245 WP_001095932.1 hypothetical protein VF
PVA79_RS20925 (PVA79_20920) 4234228..4235178 - 951 Protein_4098 ISNCY family transposase ISPlu22 VF
PVA79_RS20930 (PVA79_20925) 4235244..4235780 - 537 WP_000157067.1 single-stranded DNA-binding protein -
PVA79_RS20935 (PVA79_20930) 4235793..4236011 - 219 WP_000958171.1 hypothetical protein -
PVA79_RS20940 (PVA79_20935) 4236092..4236541 - 450 WP_000032521.1 STY4534 family ICE replication protein -
PVA79_RS20945 (PVA79_20940) 4237209..4239203 - 1995 WP_001241572.1 DNA topoisomerase III -
PVA79_RS20950 (PVA79_20945) 4239314..4240090 - 777 WP_001290445.1 TIGR03761 family integrating conjugative element protein -
PVA79_RS20955 (PVA79_20950) 4240679..4241989 - 1311 WP_001194350.1 STY4528 family pathogenicity island replication protein -
PVA79_RS20960 (PVA79_20955) 4242019..4242267 - 249 WP_000377625.1 hypothetical protein -
PVA79_RS20965 (PVA79_20960) 4242267..4242824 - 558 WP_000144322.1 DUF2857 domain-containing protein -
PVA79_RS20970 (PVA79_20965) 4242909..4243631 - 723 WP_001275616.1 DUF2786 domain-containing protein -
PVA79_RS20975 (PVA79_20970) 4243618..4243878 - 261 WP_000838568.1 hypothetical protein -
PVA79_RS20980 (PVA79_20975) 4244092..4245891 - 1800 WP_001029724.1 ParB family protein -
PVA79_RS20985 (PVA79_20980) 4245884..4247248 - 1365 WP_000018529.1 SPI-7-type island replicative DNA helicase -
PVA79_RS20990 (PVA79_20985) 4247245..4248279 - 1035 WP_001195363.1 hypothetical protein VF
PVA79_RS20995 (PVA79_20995) 4248947..4249024 + 78 Protein_4112 porin family protein -
PVA79_RS21000 (PVA79_21000) 4249124..4249876 + 753 WP_001785756.1 non-specific acid phosphatase -
PVA79_RS21005 (PVA79_21005) 4250117..4250608 - 492 WP_000626103.1 GNAT family N-acetyltransferase -
PVA79_RS21010 (PVA79_21010) 4250605..4250898 - 294 WP_001110456.1 DUF1778 domain-containing protein -
PVA79_RS21015 (PVA79_21015) 4251215..4251437 + 223 Protein_4116 hypothetical protein -
PVA79_RS21020 (PVA79_21020) 4251703..4252578 + 876 WP_000921674.1 AraC family transcriptional regulator -
PVA79_RS21025 (PVA79_21025) 4252575..4252862 + 288 WP_001269916.1 transcriptional regulator RtsB -
PVA79_RS21030 (PVA79_21030) 4252885..4253101 + 217 Protein_4119 hypothetical protein -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance