MGE detailed information

MGE type: Integrative_Conjugative_Elements        MGE length: 132928 bp
Accession: NZ_CP120397        Location: 4069624..4202551         Organism: Salmonella enterica subsp. enterica serovar Typhi strain 1521-2017_CI       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PVA76_RS19985 (PVA76_19980) 4065423..4066724 + 1302 WP_000637594.1 anaerobic C4-dicarboxylate transporter DcuA -
PVA76_RS19990 (PVA76_19985) 4066845..4067192 + 348 WP_000887832.1 divalent cation tolerance protein CutA -
PVA76_RS19995 (PVA76_19990) 4067168..4068871 + 1704 WP_000068881.1 protein-disulfide reductase DsbD -
PVA76_RS20000 (PVA76_19995) 4068908..4069483 + 576 WP_001188506.1 transcriptional regulator -
PVA76_RS20010 (PVA76_20005) 4069834..4071093 + 1260 WP_000954536.1 Prophage integrase IntS ; Integrase Integrase
PVA76_RS20015 (PVA76_20010) 4071404..4072687 + 1284 WP_000975154.1 SH3 domain-containing protein -
PVA76_RS20020 (PVA76_20015) 4072772..4073041 + 270 Protein_3919 integrase -
PVA76_RS20025 (PVA76_20020) 4073668..4074450 - 783 WP_000511749.1 hypothetical protein ; Integrase Integrase
PVA76_RS20030 (PVA76_20025) 4074720..4074914 + 195 WP_162009227.1 hypothetical protein -
PVA76_RS20035 (PVA76_20030) 4075307..4075528 - 222 WP_000193665.1 helix-turn-helix transcriptional regulator -
PVA76_RS20040 (PVA76_20035) 4075525..4075986 - 462 WP_000246267.1 hypothetical protein -
PVA76_RS20045 (PVA76_20040) 4076533..4078206 + 1674 WP_010989301.1 hypothetical protein -
PVA76_RS20050 (PVA76_20045) 4078287..4080572 + 2286 WP_010989300.1 hypothetical protein -
PVA76_RS20055 (PVA76_20050) 4080876..4081127 + 252 WP_024131240.1 hypothetical protein -
PVA76_RS20060 (PVA76_20055) 4081209..4081661 + 453 WP_000434168.1 hypothetical protein -
PVA76_RS20065 (PVA76_20060) 4081841..4082329 - 489 WP_000622308.1 GNAT family N-acetyltransferase Toxin Detail
PVA76_RS20070 (PVA76_20065) 4082326..4082619 - 294 WP_001143724.1 DUF1778 domain-containing protein Antitoxin Detail
PVA76_RS20075 (PVA76_20070) 4083046..4084059 - 1014 WP_000449622.1 Tyrosine recombinase XerC ; Integrase Integrase
PVA76_RS20080 (PVA76_20075) 4084474..4085787 - 1314 WP_285238937.1 TraI domain-containing protein -
PVA76_RS20085 (PVA76_20080) 4085795..4087306 - 1512 WP_001120833.1 UvrD-helicase domain-containing protein -
PVA76_RS20090 (PVA76_20085) 4088160..4088699 + 540 WP_001210944.1 Vi polysaccharide biosynthesis regulator TviA -
PVA76_RS20095 (PVA76_20090) 4088944..4090221 + 1278 WP_000466893.1 UDP-N-acetyl-D-glucosamine 6-dehydrogenase VF
PVA76_RS20100 (PVA76_20095) 4090224..4091270 + 1047 WP_000127915.1 UDP-N-acetylglucosamine 4-epimerase VF
PVA76_RS20105 (PVA76_20100) 4091294..4093789 + 2496 WP_010989299.1 hypothetical protein VF
PVA76_RS20110 (PVA76_20105) 4093789..4095525 + 1737 WP_000632616.1 hypothetical protein VF
PVA76_RS20115 (PVA76_20110) 4095570..4096637 + 1068 WP_000720235.1 hypothetical protein VF
PVA76_RS20120 (PVA76_20115) 4096647..4097441 + 795 WP_001023498.1 hypothetical protein VF
PVA76_RS20125 (PVA76_20120) 4097467..4098162 + 696 WP_000467404.1 Polysialic acid transport ATP-binding protein KpsT VF
PVA76_RS20130 (PVA76_20125) 4098185..4099489 + 1305 WP_000431675.1 hypothetical protein VF
PVA76_RS20135 (PVA76_20130) 4099509..4101479 + 1971 WP_000052242.1 hypothetical protein VF
PVA76_RS20140 (PVA76_20135) 4101781..4102527 - 747 WP_000354257.1 class I SAM-dependent methyltransferase -
PVA76_RS20145 (PVA76_20140) 4102527..4103417 - 891 WP_001681808.1 class I SAM-dependent methyltransferase -
PVA76_RS20150 (PVA76_20145) 4103428..4103685 - 258 WP_001681810.1 YjhX family toxin -
PVA76_RS20155 (PVA76_20150) 4103987..4104097 - 111 Protein_3946 autoinducer 2 ABC transporter substrate-binding protein -
PVA76_RS20160 (PVA76_20155) 4104332..4104676 + 345 Protein_3947 translesion error-prone DNA polymerase V autoproteolytic subunit -
PVA76_RS20165 (PVA76_20160) 4104792..4105817 - 1026 WP_000027757.1 Tyrosine recombinase XerC ; Integrase Integrase
PVA76_RS20170 (PVA76_20165) 4105821..4106453 - 633 WP_000052560.1 helix-turn-helix domain-containing protein -
PVA76_RS20175 (PVA76_20170) 4106570..4106812 + 243 WP_000102106.1 Rha family transcriptional regulator -
PVA76_RS20180 (PVA76_20175) 4106845..4107354 + 510 WP_000460852.1 phage regulatory CII family protein -
PVA76_RS20185 (PVA76_20180) 4107362..4107562 + 201 WP_000956167.1 DUF2724 domain-containing protein -
PVA76_RS20190 (PVA76_20185) 4107526..4107867 + 342 WP_000963479.1 DUF5347 family protein -
PVA76_RS20195 (PVA76_20190) 4107935..4108168 + 234 WP_001244240.1 DUF2732 family protein -
PVA76_RS20200 (PVA76_20195) 4108168..4108395 + 228 WP_000785510.1 TraR/DksA family transcriptional regulator -
PVA76_RS20205 (PVA76_20200) 4108392..4108976 + 585 WP_001090717.1 exonuclease domain-containing protein -
PVA76_RS20210 (PVA76_20205) 4108973..4109833 + 861 WP_000104130.1 DNA adenine methylase -
PVA76_RS20215 (PVA76_20210) 4109824..4112232 + 2409 WP_000301193.1 replication endonuclease -
PVA76_RS20220 (PVA76_20215) 4112400..4112588 + 189 WP_001154438.1 hypothetical protein -
PVA76_RS20225 (PVA76_20220) 4112600..4112833 + 234 WP_001217561.1 DinI family protein -
PVA76_RS20230 (PVA76_20225) 4112929..4113147 + 219 WP_000835188.1 hypothetical protein -
PVA76_RS20235 (PVA76_20230) 4113157..4114221 + 1065 WP_000829584.1 hypothetical protein -
PVA76_RS20240 (PVA76_20235) 4114218..4115282 + 1065 WP_000789323.1 hypothetical protein -
PVA76_RS20245 (PVA76_20240) 4115302..4115997 + 696 WP_000080839.1 hypothetical protein -
PVA76_RS20250 (PVA76_20245) 4116046..4117089 - 1044 WP_057492965.1 phage portal protein -
PVA76_RS20255 (PVA76_20250) 4117089..4118855 - 1767 WP_001098453.1 terminase ATPase subunit family protein -
PVA76_RS20260 (PVA76_20255) 4118998..4119831 + 834 WP_000216272.1 GPO family capsid scaffolding protein -
PVA76_RS20265 (PVA76_20260) 4119848..4120912 + 1065 WP_000730751.1 phage major capsid protein, P2 family -
PVA76_RS20270 (PVA76_20265) 4120916..4121566 + 651 WP_000059175.1 terminase endonuclease subunit -
PVA76_RS20275 (PVA76_20270) 4121660..4122124 + 465 WP_000673540.1 head completion/stabilization protein -
PVA76_RS20280 (PVA76_20275) 4122124..4122327 + 204 WP_000868184.1 tail protein X -
PVA76_RS20285 (PVA76_20280) 4122331..4122546 + 216 WP_000171566.1 HP1 family phage holin -
PVA76_RS20290 (PVA76_20285) 4122527..4123036 + 510 WP_001097942.1 lysozyme -
PVA76_RS20295 (PVA76_20290) 4123041..4123418 + 378 WP_000731034.1 DNZ54_00345 family protein -
PVA76_RS20300 (PVA76_20295) 4123415..4123843 + 429 WP_024131238.1 Rz-like lysis system protein LysB -
PVA76_RS20305 (PVA76_20300) 4123728..4123976 + 249 WP_223229656.1 Rz1-like lysis system protein LysC -
PVA76_RS20310 (PVA76_20305) 4123939..4124370 + 432 WP_001039961.1 phage tail protein -
PVA76_RS20315 (PVA76_20310) 4124363..4124809 + 447 WP_000343944.1 phage virion morphogenesis protein -
PVA76_RS20320 (PVA76_20315) 4124878..4125456 + 579 WP_000993749.1 phage baseplate assembly protein V -
PVA76_RS20325 (PVA76_20320) 4125453..4125812 + 360 WP_000177408.1 GPW/gp25 family protein -
PVA76_RS20330 (PVA76_20325) 4125799..4126707 + 909 WP_000268327.1 baseplate assembly protein -
PVA76_RS20335 (PVA76_20330) 4126700..4127305 + 606 WP_001086816.1 phage tail protein I -
PVA76_RS20340 (PVA76_20335) 4127302..4128921 + 1620 WP_000104806.1 phage tail protein -
PVA76_RS20345 (PVA76_20340) 4128928..4129335 + 408 WP_000006337.1 tail fiber assembly protein -
PVA76_RS20350 (PVA76_20345) 4129533..4130255 - 723 WP_000161708.1 Guanine nucleotide exchange factor SopE VF
PVA76_RS20355 (PVA76_20350) 4130466..4130687 + 222 Protein_3986 helix-turn-helix domain-containing protein -
PVA76_RS20360 (PVA76_20355) 4130790..4131962 + 1173 WP_000046101.1 phage tail sheath protein -
PVA76_RS20365 (PVA76_20360) 4131972..4132487 + 516 WP_001207653.1 phage major tail tube protein -
PVA76_RS20370 (PVA76_20365) 4132542..4132844 + 303 WP_001280965.1 phage tail assembly protein -
PVA76_RS20375 (PVA76_20370) 4132859..4132978 + 120 WP_000763315.1 GpE family phage tail protein -
PVA76_RS20380 (PVA76_20375) 4132971..4135751 + 2781 WP_001282813.1 phage tail tape measure protein -
PVA76_RS20385 (PVA76_20380) 4135751..4136236 + 486 WP_000980405.1 phage tail protein -
PVA76_RS20390 (PVA76_20385) 4136233..4137333 + 1101 WP_001011750.1 phage late control D family protein -
PVA76_RS20395 (PVA76_20390) 4137401..4137619 + 219 WP_001775272.1 ogr/Delta-like zinc finger family protein -
PVA76_RS20400 (PVA76_20395) 4137706..4138083 - 378 WP_001039750.1 hypothetical protein -
PVA76_RS20405 (PVA76_20400) 4138217..4138303 + 87 Protein_3996 peptidase -
PVA76_RS20410 (PVA76_20405) 4138303..4139577 + 1275 WP_000457555.1 Y-family DNA polymerase -
PVA76_RS20415 (PVA76_20410) 4139709..4139978 + 270 WP_001222413.1 hypothetical protein -
PVA76_RS20420 (PVA76_20415) 4140078..4140404 - 327 WP_000911568.1 DUF3085 domain-containing protein -
PVA76_RS20425 (PVA76_20420) 4140479..4141378 - 900 WP_000022217.1 hypothetical protein -
PVA76_RS20430 (PVA76_20425) 4141452..4142360 - 909 WP_000881183.1 hypothetical protein -
PVA76_RS20435 (PVA76_20430) 4142432..4144381 - 1950 WP_001097965.1 zincin-like metallopeptidase domain-containing protein -
PVA76_RS20440 (PVA76_20435) 4144470..4144928 - 459 WP_000115421.1 hypothetical protein -
PVA76_RS20445 (PVA76_20440) 4145006..4145302 - 297 WP_000968700.1 hypothetical protein -
PVA76_RS20450 (PVA76_20445) 4145299..4145751 - 453 WP_000979718.1 hypothetical protein -
PVA76_RS20455 (PVA76_20450) 4145769..4145978 - 210 WP_000018145.1 hypothetical protein -
PVA76_RS20460 (PVA76_20455) 4146349..4146729 - 381 WP_001103837.1 hypothetical protein -
PVA76_RS20465 (PVA76_20460) 4146825..4147127 - 303 WP_001020123.1 hypothetical protein -
PVA76_RS20470 (PVA76_20465) 4147851..4148771 - 921 WP_000907593.1 hypothetical protein ; Integrase Integrase
PVA76_RS20475 (PVA76_20470) 4150037..4150579 + 543 WP_010989295.1 DUF1062 domain-containing protein -
PVA76_RS20480 (PVA76_20475) 4150790..4151431 - 642 WP_000502502.1 ParB N-terminal domain-containing protein -
PVA76_RS20485 (PVA76_20480) 4151416..4152663 - 1248 WP_001283066.1 phosphoadenosine phosphosulfate reductase -
PVA76_RS20490 (PVA76_20485) 4152951..4153310 + 360 WP_010989293.1 hypothetical protein -
PVA76_RS20495 (PVA76_20490) 4153959..4155464 - 1506 WP_000213770.1 conjugal transfer protein TraG N-terminal domain-containing protein -
PVA76_RS20500 (PVA76_20495) 4155797..4157194 - 1398 WP_014341560.1 integrating conjugative element protein -
PVA76_RS20505 (PVA76_20500) 4157242..4158210 - 969 WP_000838927.1 TIGR03756 family integrating conjugative element protein -
PVA76_RS20510 (PVA76_20505) 4158207..4158599 - 393 WP_000821941.1 TIGR03757 family integrating conjugative element protein -
PVA76_RS20515 (PVA76_20510) 4158754..4159140 - 387 WP_000054770.1 hypothetical protein -
PVA76_RS20520 (PVA76_20515) 4159295..4162011 - 2717 Protein_4019 conjugative transfer ATPase -
PVA76_RS20525 (PVA76_20520) 4162131..4162580 - 450 WP_000244536.1 TIGR03751 family conjugal transfer lipoprotein -
PVA76_RS20530 (PVA76_20525) 4162567..4164045 - 1479 WP_001165842.1 TIGR03752 family integrating conjugative element protein -
PVA76_RS20535 (PVA76_20530) 4164035..4164934 - 900 WP_001240640.1 TIGR03749 family integrating conjugative element protein -
PVA76_RS20540 (PVA76_20535) 4164934..4165587 - 654 WP_000086082.1 TIGR03746 family integrating conjugative element protein -
PVA76_RS20545 (PVA76_20540) 4165584..4165958 - 375 WP_000848326.1 TIGR03750 family conjugal transfer protein -
PVA76_RS20550 (PVA76_20545) 4165968..4166333 - 366 WP_223228898.1 TIGR03745 family integrating conjugative element membrane protein -
PVA76_RS20555 (PVA76_20550) 4166360..4166593 - 234 WP_015899494.1 TIGR03758 family integrating conjugative element protein -
PVA76_RS20560 (PVA76_20555) 4166599..4166853 - 255 WP_000252871.1 RAQPRD family integrative conjugative element protein -
PVA76_RS20565 (PVA76_20560) 4167090..4167847 - 758 Protein_4028 TIGR03747 family integrating conjugative element membrane protein -
PVA76_RS20570 (PVA76_20565) 4167844..4169934 - 2091 WP_000071290.1 type IV conjugative transfer system coupling protein TraD -
PVA76_RS20575 (PVA76_20570) 4169954..4170523 - 570 WP_000626967.1 restriction endonuclease -
PVA76_RS20580 (PVA76_20575) 4170533..4171033 - 501 WP_000253629.1 integrating conjugative element protein -
PVA76_RS20585 (PVA76_20580) 4171069..4171755 - 687 WP_000013624.1 hypothetical protein VF
PVA76_RS20590 (PVA76_20585) 4171734..4172474 - 741 WP_001768408.1 TIGR03759 family integrating conjugative element protein -
PVA76_RS20595 (PVA76_20590) 4172493..4173407 - 915 WP_000214158.1 hypothetical protein -
PVA76_RS20600 (PVA76_20595) 4173364..4173726 - 363 WP_001149494.1 hypothetical protein -
PVA76_RS20605 (PVA76_20600) 4173914..4174789 - 876 WP_000994659.1 hypothetical protein -
PVA76_RS20610 (PVA76_20605) 4175001..4175468 - 468 WP_000455463.1 hypothetical protein -
PVA76_RS20615 (PVA76_20610) 4175565..4176716 - 1152 WP_000089603.1 Tyrosine recombinase XerC ; Integrase Integrase
PVA76_RS20620 (PVA76_20615) 4177064..4178371 - 1308 WP_000744276.1 hypothetical protein VF
PVA76_RS20625 (PVA76_20620) 4178368..4179030 - 663 WP_000218700.1 hypothetical protein VF
PVA76_RS20630 (PVA76_20625) 4179027..4179470 - 444 WP_223228896.1 hypothetical protein VF
PVA76_RS20635 (PVA76_20630) 4179513..4180109 - 597 WP_024131234.1 hypothetical protein VF
PVA76_RS20640 (PVA76_20635) 4180148..4181233 - 1086 WP_000074784.1 hypothetical protein VF
PVA76_RS20645 (PVA76_20640) 4181230..4182945 - 1716 WP_001289222.1 hypothetical protein VF
PVA76_RS20650 (PVA76_20645) 4182955..4183335 - 381 WP_014341558.1 hypothetical protein VF
PVA76_RS20655 (PVA76_20650) 4183523..4184809 - 1287 WP_000763621.1 hypothetical protein VF
PVA76_RS20660 (PVA76_20655) 4184811..4185149 - 339 WP_048657783.1 Outer membrane lipoprotein BfpB VF
PVA76_RS20665 (PVA76_20660) 4185115..4186050 - 936 WP_049783585.1 hypothetical protein VF
PVA76_RS20670 (PVA76_20665) 4186521..4186940 - 420 WP_000539682.1 hypothetical protein VF
PVA76_RS20675 (PVA76_20670) 4186943..4188187 - 1245 WP_057492783.1 hypothetical protein VF
PVA76_RS20680 (PVA76_20675) 4188352..4189302 - 951 Protein_4051 ISNCY family transposase ISPlu22 VF
PVA76_RS20685 (PVA76_20680) 4189368..4189904 - 537 WP_000157067.1 single-stranded DNA-binding protein -
PVA76_RS20690 (PVA76_20685) 4189917..4190135 - 219 WP_000958171.1 hypothetical protein -
PVA76_RS20695 (PVA76_20690) 4190216..4190665 - 450 WP_000032521.1 STY4534 family ICE replication protein -
PVA76_RS20700 (PVA76_20695) 4191333..4193327 - 1995 WP_001241572.1 DNA topoisomerase III -
PVA76_RS20705 (PVA76_20700) 4193438..4194214 - 777 WP_001290445.1 TIGR03761 family integrating conjugative element protein -
PVA76_RS20710 (PVA76_20705) 4194803..4196113 - 1311 WP_001194350.1 STY4528 family pathogenicity island replication protein -
PVA76_RS20715 (PVA76_20710) 4196143..4196391 - 249 WP_000377625.1 hypothetical protein -
PVA76_RS20720 (PVA76_20715) 4196391..4196948 - 558 WP_000144322.1 DUF2857 domain-containing protein -
PVA76_RS20725 (PVA76_20720) 4197033..4197755 - 723 WP_001275616.1 DUF2786 domain-containing protein -
PVA76_RS20730 (PVA76_20725) 4197742..4198002 - 261 WP_000838568.1 hypothetical protein -
PVA76_RS20735 (PVA76_20730) 4198216..4200015 - 1800 WP_001029724.1 ParB family protein -
PVA76_RS20740 (PVA76_20735) 4200008..4201372 - 1365 WP_000018526.1 SPI-7-type island replicative DNA helicase -
PVA76_RS20745 (PVA76_20740) 4201369..4202403 - 1035 WP_001195363.1 hypothetical protein VF
PVA76_RS20750 (PVA76_20745) 4202698..4203337 + 640 Protein_4065 integrase arm-type DNA-binding domain-containing protein -
PVA76_RS20755 (PVA76_20750) 4204266..4204562 + 297 WP_010989236.1 hypothetical protein -
PVA76_RS20760 (PVA76_20755) 4204632..4204949 + 318 WP_001141622.1 PAAR domain-containing protein -
PVA76_RS20765 (PVA76_20760) 4204946..4205212 + 267 WP_000768134.1 bacteriocin immunity protein -
PVA76_RS20770 (PVA76_20765) 4205455..4205733 + 279 WP_000421096.1 bacteriocin immunity protein -
PVA76_RS20775 (PVA76_20770) 4206169..4206639 + 471 WP_234828459.1 hypothetical protein -
PVA76_RS20780 (PVA76_20775) 4206898..4207083 + 186 WP_001681937.1 DUF3289 family protein -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance