MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 132928 bp
Accession: NZ_CP120396 Location: 4070122..4203049 Organism: Salmonella enterica subsp. enterica serovar Typhi strain 1521-2017_CO_04 Replicon: chromosome
Accession: NZ_CP120396 Location: 4070122..4203049 Organism: Salmonella enterica subsp. enterica serovar Typhi strain 1521-2017_CO_04 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PVA80_RS19880 (PVA80_19875) | 4065921..4067222 | + | 1302 | WP_000637594.1 | anaerobic C4-dicarboxylate transporter DcuA | - |
PVA80_RS19885 (PVA80_19880) | 4067343..4067690 | + | 348 | WP_000887832.1 | divalent cation tolerance protein CutA | - |
PVA80_RS19890 (PVA80_19885) | 4067666..4069369 | + | 1704 | WP_000068881.1 | protein-disulfide reductase DsbD | - |
PVA80_RS19895 (PVA80_19890) | 4069406..4069981 | + | 576 | WP_001188506.1 | transcriptional regulator | - |
PVA80_RS19905 (PVA80_19900) | 4070332..4071591 | + | 1260 | WP_000954536.1 | Prophage integrase IntS ; Integrase | Integrase |
PVA80_RS19910 (PVA80_19905) | 4071902..4073185 | + | 1284 | WP_000975154.1 | SH3 domain-containing protein | - |
PVA80_RS19915 (PVA80_19910) | 4073270..4073539 | + | 270 | Protein_3898 | integrase | - |
PVA80_RS19920 (PVA80_19915) | 4074166..4074948 | - | 783 | WP_000511749.1 | hypothetical protein ; Integrase | Integrase |
PVA80_RS19925 (PVA80_19920) | 4075218..4075412 | + | 195 | WP_162009227.1 | hypothetical protein | - |
PVA80_RS19930 (PVA80_19925) | 4075805..4076026 | - | 222 | WP_000193665.1 | helix-turn-helix transcriptional regulator | - |
PVA80_RS19935 (PVA80_19930) | 4076023..4076484 | - | 462 | WP_000246267.1 | hypothetical protein | - |
PVA80_RS19940 (PVA80_19935) | 4077031..4078704 | + | 1674 | WP_010989301.1 | hypothetical protein | - |
PVA80_RS19945 (PVA80_19940) | 4078785..4081070 | + | 2286 | WP_010989300.1 | hypothetical protein | - |
PVA80_RS19950 (PVA80_19945) | 4081374..4081625 | + | 252 | WP_024131240.1 | hypothetical protein | - |
PVA80_RS19955 (PVA80_19950) | 4081707..4082159 | + | 453 | WP_000434168.1 | hypothetical protein | - |
PVA80_RS19960 (PVA80_19955) | 4082339..4082827 | - | 489 | WP_000622308.1 | GNAT family N-acetyltransferase | Toxin Detail |
PVA80_RS19965 (PVA80_19960) | 4082824..4083117 | - | 294 | WP_001143724.1 | DUF1778 domain-containing protein | Antitoxin Detail |
PVA80_RS19970 (PVA80_19965) | 4083544..4084557 | - | 1014 | WP_000449622.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
PVA80_RS19975 (PVA80_19970) | 4084972..4086309 | - | 1338 | WP_234818495.1 | TraI domain-containing protein | - |
PVA80_RS19980 (PVA80_19975) | 4086293..4087804 | - | 1512 | WP_001120833.1 | UvrD-helicase domain-containing protein | - |
PVA80_RS19985 (PVA80_19980) | 4088658..4089197 | + | 540 | WP_001210944.1 | Vi polysaccharide biosynthesis regulator TviA | - |
PVA80_RS19990 (PVA80_19985) | 4089442..4090719 | + | 1278 | WP_000466893.1 | UDP-N-acetyl-D-glucosamine 6-dehydrogenase | VF |
PVA80_RS19995 (PVA80_19990) | 4090722..4091768 | + | 1047 | WP_000127915.1 | UDP-N-acetylglucosamine 4-epimerase | VF |
PVA80_RS20000 (PVA80_19995) | 4091792..4094287 | + | 2496 | WP_010989299.1 | hypothetical protein | VF |
PVA80_RS20005 (PVA80_20000) | 4094287..4096023 | + | 1737 | WP_000632616.1 | hypothetical protein | VF |
PVA80_RS20010 (PVA80_20005) | 4096068..4097135 | + | 1068 | WP_000720235.1 | hypothetical protein | VF |
PVA80_RS20015 (PVA80_20010) | 4097145..4097939 | + | 795 | WP_001023498.1 | hypothetical protein | VF |
PVA80_RS20020 (PVA80_20015) | 4097965..4098660 | + | 696 | WP_000467404.1 | Polysialic acid transport ATP-binding protein KpsT | VF |
PVA80_RS20025 (PVA80_20020) | 4098683..4099987 | + | 1305 | WP_000431675.1 | hypothetical protein | VF |
PVA80_RS20030 (PVA80_20025) | 4100007..4101977 | + | 1971 | WP_000052242.1 | hypothetical protein | VF |
PVA80_RS20035 (PVA80_20030) | 4102279..4103025 | - | 747 | WP_000354257.1 | class I SAM-dependent methyltransferase | - |
PVA80_RS20040 (PVA80_20035) | 4103025..4103915 | - | 891 | WP_001681808.1 | class I SAM-dependent methyltransferase | - |
PVA80_RS20045 (PVA80_20040) | 4103926..4104183 | - | 258 | WP_001681810.1 | YjhX family toxin | - |
PVA80_RS20050 (PVA80_20045) | 4104485..4104595 | - | 111 | Protein_3925 | autoinducer 2 ABC transporter substrate-binding protein | - |
PVA80_RS20055 (PVA80_20050) | 4104830..4105174 | + | 345 | Protein_3926 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
PVA80_RS20060 (PVA80_20055) | 4105290..4106315 | - | 1026 | WP_000027757.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
PVA80_RS20065 (PVA80_20060) | 4106319..4106951 | - | 633 | WP_000052560.1 | helix-turn-helix domain-containing protein | - |
PVA80_RS20070 (PVA80_20065) | 4107068..4107310 | + | 243 | WP_000102106.1 | Rha family transcriptional regulator | - |
PVA80_RS20075 (PVA80_20070) | 4107343..4107852 | + | 510 | WP_000460852.1 | phage regulatory CII family protein | - |
PVA80_RS20080 (PVA80_20075) | 4107860..4108060 | + | 201 | WP_000956167.1 | DUF2724 domain-containing protein | - |
PVA80_RS20085 (PVA80_20080) | 4108024..4108365 | + | 342 | WP_000963479.1 | DUF5347 family protein | - |
PVA80_RS20090 (PVA80_20085) | 4108433..4108666 | + | 234 | WP_001244240.1 | DUF2732 family protein | - |
PVA80_RS20095 (PVA80_20090) | 4108666..4108893 | + | 228 | WP_000785510.1 | TraR/DksA family transcriptional regulator | - |
PVA80_RS20100 (PVA80_20095) | 4108890..4109474 | + | 585 | WP_001090717.1 | exonuclease domain-containing protein | - |
PVA80_RS20105 (PVA80_20100) | 4109471..4110331 | + | 861 | WP_000104130.1 | DNA adenine methylase | - |
PVA80_RS20110 (PVA80_20105) | 4110322..4112730 | + | 2409 | WP_000301193.1 | replication endonuclease | - |
PVA80_RS20115 (PVA80_20110) | 4112898..4113086 | + | 189 | WP_001154438.1 | hypothetical protein | - |
PVA80_RS20120 (PVA80_20115) | 4113098..4113331 | + | 234 | WP_001217561.1 | DinI family protein | - |
PVA80_RS20125 (PVA80_20120) | 4113427..4113645 | + | 219 | WP_000835188.1 | hypothetical protein | - |
PVA80_RS20130 (PVA80_20125) | 4113655..4114719 | + | 1065 | WP_000829584.1 | hypothetical protein | - |
PVA80_RS20135 (PVA80_20130) | 4114716..4115780 | + | 1065 | WP_000789323.1 | hypothetical protein | - |
PVA80_RS20140 (PVA80_20135) | 4115800..4116495 | + | 696 | WP_000080839.1 | hypothetical protein | - |
PVA80_RS20145 (PVA80_20140) | 4116544..4117587 | - | 1044 | WP_057492965.1 | phage portal protein | - |
PVA80_RS20150 (PVA80_20145) | 4117587..4119353 | - | 1767 | WP_001098453.1 | terminase ATPase subunit family protein | - |
PVA80_RS20155 (PVA80_20150) | 4119496..4120329 | + | 834 | WP_000216272.1 | GPO family capsid scaffolding protein | - |
PVA80_RS20160 (PVA80_20155) | 4120346..4121410 | + | 1065 | WP_000730751.1 | phage major capsid protein, P2 family | - |
PVA80_RS20165 (PVA80_20160) | 4121414..4122064 | + | 651 | WP_000059175.1 | terminase endonuclease subunit | - |
PVA80_RS20170 (PVA80_20165) | 4122158..4122622 | + | 465 | WP_000673540.1 | head completion/stabilization protein | - |
PVA80_RS20175 (PVA80_20170) | 4122622..4122825 | + | 204 | WP_000868184.1 | tail protein X | - |
PVA80_RS20180 (PVA80_20175) | 4122829..4123044 | + | 216 | WP_000171566.1 | HP1 family phage holin | - |
PVA80_RS20185 (PVA80_20180) | 4123025..4123534 | + | 510 | WP_001097942.1 | lysozyme | - |
PVA80_RS20190 (PVA80_20185) | 4123539..4123916 | + | 378 | WP_000731034.1 | DNZ54_00345 family protein | - |
PVA80_RS20195 (PVA80_20190) | 4123913..4124341 | + | 429 | WP_024131238.1 | Rz-like lysis system protein LysB | - |
PVA80_RS20200 (PVA80_20195) | 4124226..4124474 | + | 249 | WP_223229656.1 | Rz1-like lysis system protein LysC | - |
PVA80_RS20205 (PVA80_20200) | 4124437..4124868 | + | 432 | WP_001039961.1 | phage tail protein | - |
PVA80_RS20210 (PVA80_20205) | 4124861..4125307 | + | 447 | WP_000343944.1 | phage virion morphogenesis protein | - |
PVA80_RS20215 (PVA80_20210) | 4125376..4125954 | + | 579 | WP_000993749.1 | phage baseplate assembly protein V | - |
PVA80_RS20220 (PVA80_20215) | 4125951..4126310 | + | 360 | WP_000177408.1 | GPW/gp25 family protein | - |
PVA80_RS20225 (PVA80_20220) | 4126297..4127205 | + | 909 | WP_000268327.1 | baseplate assembly protein | - |
PVA80_RS20230 (PVA80_20225) | 4127198..4127803 | + | 606 | WP_001086816.1 | phage tail protein I | - |
PVA80_RS20235 (PVA80_20230) | 4127800..4129419 | + | 1620 | WP_000104806.1 | phage tail protein | - |
PVA80_RS20240 (PVA80_20235) | 4129426..4129833 | + | 408 | WP_000006337.1 | tail fiber assembly protein | - |
PVA80_RS20245 (PVA80_20240) | 4130031..4130753 | - | 723 | WP_000161708.1 | Guanine nucleotide exchange factor SopE | VF |
PVA80_RS20250 (PVA80_20245) | 4130964..4131185 | + | 222 | Protein_3965 | helix-turn-helix domain-containing protein | - |
PVA80_RS20255 (PVA80_20250) | 4131288..4132460 | + | 1173 | WP_000046101.1 | phage tail sheath protein | - |
PVA80_RS20260 (PVA80_20255) | 4132470..4132985 | + | 516 | WP_001207653.1 | phage major tail tube protein | - |
PVA80_RS20265 (PVA80_20260) | 4133040..4133342 | + | 303 | WP_001280965.1 | phage tail assembly protein | - |
PVA80_RS20270 (PVA80_20265) | 4133357..4133476 | + | 120 | WP_000763315.1 | GpE family phage tail protein | - |
PVA80_RS20275 (PVA80_20270) | 4133469..4136249 | + | 2781 | WP_001282813.1 | phage tail tape measure protein | - |
PVA80_RS20280 (PVA80_20275) | 4136249..4136734 | + | 486 | WP_000980405.1 | phage tail protein | - |
PVA80_RS20285 (PVA80_20280) | 4136731..4137831 | + | 1101 | WP_001011750.1 | phage late control D family protein | - |
PVA80_RS20290 (PVA80_20285) | 4137899..4138117 | + | 219 | WP_001775272.1 | ogr/Delta-like zinc finger family protein | - |
PVA80_RS20295 (PVA80_20290) | 4138204..4138581 | - | 378 | WP_001039750.1 | hypothetical protein | - |
PVA80_RS20300 (PVA80_20295) | 4138715..4138801 | + | 87 | Protein_3975 | peptidase | - |
PVA80_RS20305 (PVA80_20300) | 4138801..4140075 | + | 1275 | WP_000457555.1 | Y-family DNA polymerase | - |
PVA80_RS20310 (PVA80_20305) | 4140207..4140476 | + | 270 | WP_001222413.1 | hypothetical protein | - |
PVA80_RS20315 (PVA80_20310) | 4140576..4140902 | - | 327 | WP_000911568.1 | DUF3085 domain-containing protein | - |
PVA80_RS20320 (PVA80_20315) | 4140977..4141876 | - | 900 | WP_000022217.1 | hypothetical protein | - |
PVA80_RS20325 (PVA80_20320) | 4141950..4142858 | - | 909 | WP_000881183.1 | hypothetical protein | - |
PVA80_RS20330 (PVA80_20325) | 4142930..4144879 | - | 1950 | WP_001097965.1 | zincin-like metallopeptidase domain-containing protein | - |
PVA80_RS20335 (PVA80_20330) | 4144968..4145426 | - | 459 | WP_000115421.1 | hypothetical protein | - |
PVA80_RS20340 (PVA80_20335) | 4145504..4145800 | - | 297 | WP_000968700.1 | hypothetical protein | - |
PVA80_RS20345 (PVA80_20340) | 4145797..4146249 | - | 453 | WP_000979718.1 | hypothetical protein | - |
PVA80_RS20350 (PVA80_20345) | 4146267..4146476 | - | 210 | WP_000018145.1 | hypothetical protein | - |
PVA80_RS20355 (PVA80_20350) | 4146847..4147227 | - | 381 | WP_001103837.1 | hypothetical protein | - |
PVA80_RS20360 (PVA80_20355) | 4147323..4147625 | - | 303 | WP_001020123.1 | hypothetical protein | - |
PVA80_RS20365 (PVA80_20360) | 4148349..4149269 | - | 921 | WP_000907593.1 | hypothetical protein ; Integrase | Integrase |
PVA80_RS20370 (PVA80_20365) | 4150535..4151077 | + | 543 | WP_010989295.1 | DUF1062 domain-containing protein | - |
PVA80_RS20375 (PVA80_20370) | 4151288..4151929 | - | 642 | WP_000502502.1 | ParB N-terminal domain-containing protein | - |
PVA80_RS20380 (PVA80_20375) | 4151914..4153161 | - | 1248 | WP_001283066.1 | phosphoadenosine phosphosulfate reductase | - |
PVA80_RS20385 (PVA80_20380) | 4153449..4153808 | + | 360 | WP_010989293.1 | hypothetical protein | - |
PVA80_RS20390 (PVA80_20385) | 4154457..4155962 | - | 1506 | WP_000213770.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
PVA80_RS20395 (PVA80_20390) | 4156295..4157692 | - | 1398 | WP_014341560.1 | integrating conjugative element protein | - |
PVA80_RS20400 (PVA80_20395) | 4157740..4158708 | - | 969 | WP_000838927.1 | TIGR03756 family integrating conjugative element protein | - |
PVA80_RS20405 (PVA80_20400) | 4158705..4159097 | - | 393 | WP_000821941.1 | TIGR03757 family integrating conjugative element protein | - |
PVA80_RS20410 (PVA80_20405) | 4159252..4159638 | - | 387 | WP_000054770.1 | hypothetical protein | - |
PVA80_RS20415 (PVA80_20410) | 4159793..4162509 | - | 2717 | Protein_3998 | conjugative transfer ATPase | - |
PVA80_RS20420 (PVA80_20415) | 4162629..4163078 | - | 450 | WP_000244536.1 | TIGR03751 family conjugal transfer lipoprotein | - |
PVA80_RS20425 (PVA80_20420) | 4163065..4164543 | - | 1479 | WP_001165842.1 | TIGR03752 family integrating conjugative element protein | - |
PVA80_RS20430 (PVA80_20425) | 4164533..4165432 | - | 900 | WP_001240640.1 | TIGR03749 family integrating conjugative element protein | - |
PVA80_RS20435 (PVA80_20430) | 4165432..4166085 | - | 654 | WP_000086082.1 | TIGR03746 family integrating conjugative element protein | - |
PVA80_RS20440 (PVA80_20435) | 4166082..4166456 | - | 375 | WP_000848326.1 | TIGR03750 family conjugal transfer protein | - |
PVA80_RS20445 (PVA80_20440) | 4166466..4166831 | - | 366 | WP_223228898.1 | TIGR03745 family integrating conjugative element membrane protein | - |
PVA80_RS20450 (PVA80_20445) | 4166858..4167091 | - | 234 | WP_015899494.1 | TIGR03758 family integrating conjugative element protein | - |
PVA80_RS20455 (PVA80_20450) | 4167097..4167351 | - | 255 | WP_000252871.1 | RAQPRD family integrative conjugative element protein | - |
PVA80_RS20460 (PVA80_20455) | 4167588..4168345 | - | 758 | Protein_4007 | TIGR03747 family integrating conjugative element membrane protein | - |
PVA80_RS20465 (PVA80_20460) | 4168342..4170432 | - | 2091 | WP_000071290.1 | type IV conjugative transfer system coupling protein TraD | - |
PVA80_RS20470 (PVA80_20465) | 4170452..4171021 | - | 570 | WP_000626967.1 | restriction endonuclease | - |
PVA80_RS20475 (PVA80_20470) | 4171031..4171531 | - | 501 | WP_000253629.1 | integrating conjugative element protein | - |
PVA80_RS20480 (PVA80_20475) | 4171567..4172253 | - | 687 | WP_000013624.1 | hypothetical protein | VF |
PVA80_RS20485 (PVA80_20480) | 4172232..4172972 | - | 741 | WP_001768408.1 | TIGR03759 family integrating conjugative element protein | - |
PVA80_RS20490 (PVA80_20485) | 4172991..4173905 | - | 915 | WP_000214158.1 | hypothetical protein | - |
PVA80_RS20495 (PVA80_20490) | 4173862..4174224 | - | 363 | WP_001149494.1 | hypothetical protein | - |
PVA80_RS20500 (PVA80_20495) | 4174412..4175287 | - | 876 | WP_000994659.1 | hypothetical protein | - |
PVA80_RS20505 (PVA80_20500) | 4175499..4175966 | - | 468 | WP_000455463.1 | hypothetical protein | - |
PVA80_RS20510 (PVA80_20505) | 4176063..4177214 | - | 1152 | WP_000089603.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
PVA80_RS20515 (PVA80_20510) | 4177562..4178869 | - | 1308 | WP_000744276.1 | hypothetical protein | VF |
PVA80_RS20520 (PVA80_20515) | 4178866..4179528 | - | 663 | WP_000218700.1 | hypothetical protein | VF |
PVA80_RS20525 (PVA80_20520) | 4179525..4179968 | - | 444 | WP_223228896.1 | hypothetical protein | VF |
PVA80_RS20530 (PVA80_20525) | 4180011..4180607 | - | 597 | WP_024131234.1 | hypothetical protein | VF |
PVA80_RS20535 (PVA80_20530) | 4180646..4181731 | - | 1086 | WP_000074784.1 | hypothetical protein | VF |
PVA80_RS20540 (PVA80_20535) | 4181728..4183443 | - | 1716 | WP_001289222.1 | hypothetical protein | VF |
PVA80_RS20545 (PVA80_20540) | 4183453..4183833 | - | 381 | WP_014341558.1 | hypothetical protein | VF |
PVA80_RS20550 (PVA80_20545) | 4184021..4185307 | - | 1287 | WP_000763621.1 | hypothetical protein | VF |
PVA80_RS20555 (PVA80_20550) | 4185309..4185647 | - | 339 | WP_048657783.1 | Outer membrane lipoprotein BfpB | VF |
PVA80_RS20560 (PVA80_20555) | 4185613..4186548 | - | 936 | WP_049783585.1 | hypothetical protein | VF |
PVA80_RS20565 (PVA80_20560) | 4187019..4187438 | - | 420 | WP_000539682.1 | hypothetical protein | VF |
PVA80_RS20570 (PVA80_20565) | 4187441..4188685 | - | 1245 | WP_057492783.1 | hypothetical protein | VF |
PVA80_RS20575 (PVA80_20570) | 4188850..4189800 | - | 951 | Protein_4030 | ISNCY family transposase ISPlu22 | VF |
PVA80_RS20580 (PVA80_20575) | 4189866..4190402 | - | 537 | WP_000157067.1 | single-stranded DNA-binding protein | - |
PVA80_RS20585 (PVA80_20580) | 4190415..4190633 | - | 219 | WP_000958171.1 | hypothetical protein | - |
PVA80_RS20590 (PVA80_20585) | 4190714..4191163 | - | 450 | WP_000032521.1 | STY4534 family ICE replication protein | - |
PVA80_RS20595 (PVA80_20590) | 4191831..4193825 | - | 1995 | WP_001241572.1 | DNA topoisomerase III | - |
PVA80_RS20600 (PVA80_20595) | 4193936..4194712 | - | 777 | WP_001290445.1 | TIGR03761 family integrating conjugative element protein | - |
PVA80_RS20605 (PVA80_20600) | 4195301..4196611 | - | 1311 | WP_001194350.1 | STY4528 family pathogenicity island replication protein | - |
PVA80_RS20610 (PVA80_20605) | 4196641..4196889 | - | 249 | WP_000377625.1 | hypothetical protein | - |
PVA80_RS20615 (PVA80_20610) | 4196889..4197446 | - | 558 | WP_000144322.1 | DUF2857 domain-containing protein | - |
PVA80_RS20620 (PVA80_20615) | 4197531..4198253 | - | 723 | WP_001275616.1 | DUF2786 domain-containing protein | - |
PVA80_RS20625 (PVA80_20620) | 4198240..4198500 | - | 261 | WP_000838568.1 | hypothetical protein | - |
PVA80_RS20630 (PVA80_20625) | 4198714..4200513 | - | 1800 | WP_001029724.1 | ParB family protein | - |
PVA80_RS20635 (PVA80_20630) | 4200506..4201870 | - | 1365 | WP_000018526.1 | SPI-7-type island replicative DNA helicase | - |
PVA80_RS20640 (PVA80_20635) | 4201867..4202901 | - | 1035 | WP_001195363.1 | hypothetical protein | VF |
PVA80_RS20645 (PVA80_20640) | 4203196..4203835 | + | 640 | Protein_4044 | integrase arm-type DNA-binding domain-containing protein | - |
PVA80_RS20650 (PVA80_20645) | 4205130..4205447 | + | 318 | WP_001141622.1 | PAAR domain-containing protein | - |
PVA80_RS20655 (PVA80_20650) | 4205444..4205710 | + | 267 | WP_000768134.1 | bacteriocin immunity protein | - |
PVA80_RS20660 (PVA80_20655) | 4205953..4206231 | + | 279 | WP_000421096.1 | bacteriocin immunity protein | - |
PVA80_RS20665 (PVA80_20660) | 4206634..4207137 | + | 504 | WP_001151810.1 | hypothetical protein | - |
PVA80_RS20670 (PVA80_20665) | 4207396..4207581 | + | 186 | WP_001681937.1 | DUF3289 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
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