NZ_CP1203964070122..4203049

MGE detailed information

MGE type: Integrative_Conjugative_Elements        MGE length: 132928 bp
Accession: NZ_CP120396        Location: 4070122..4203049         Organism: Salmonella enterica subsp. enterica serovar Typhi strain 1521-2017_CO_04       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PVA80_RS19880 (PVA80_19875) 4065921..4067222 + 1302 WP_000637594.1 anaerobic C4-dicarboxylate transporter DcuA -
PVA80_RS19885 (PVA80_19880) 4067343..4067690 + 348 WP_000887832.1 divalent cation tolerance protein CutA -
PVA80_RS19890 (PVA80_19885) 4067666..4069369 + 1704 WP_000068881.1 protein-disulfide reductase DsbD -
PVA80_RS19895 (PVA80_19890) 4069406..4069981 + 576 WP_001188506.1 transcriptional regulator -
PVA80_RS19905 (PVA80_19900) 4070332..4071591 + 1260 WP_000954536.1 Prophage integrase IntS ; Integrase Integrase
PVA80_RS19910 (PVA80_19905) 4071902..4073185 + 1284 WP_000975154.1 SH3 domain-containing protein -
PVA80_RS19915 (PVA80_19910) 4073270..4073539 + 270 Protein_3898 integrase -
PVA80_RS19920 (PVA80_19915) 4074166..4074948 - 783 WP_000511749.1 hypothetical protein ; Integrase Integrase
PVA80_RS19925 (PVA80_19920) 4075218..4075412 + 195 WP_162009227.1 hypothetical protein -
PVA80_RS19930 (PVA80_19925) 4075805..4076026 - 222 WP_000193665.1 helix-turn-helix transcriptional regulator -
PVA80_RS19935 (PVA80_19930) 4076023..4076484 - 462 WP_000246267.1 hypothetical protein -
PVA80_RS19940 (PVA80_19935) 4077031..4078704 + 1674 WP_010989301.1 hypothetical protein -
PVA80_RS19945 (PVA80_19940) 4078785..4081070 + 2286 WP_010989300.1 hypothetical protein -
PVA80_RS19950 (PVA80_19945) 4081374..4081625 + 252 WP_024131240.1 hypothetical protein -
PVA80_RS19955 (PVA80_19950) 4081707..4082159 + 453 WP_000434168.1 hypothetical protein -
PVA80_RS19960 (PVA80_19955) 4082339..4082827 - 489 WP_000622308.1 GNAT family N-acetyltransferase Toxin Detail
PVA80_RS19965 (PVA80_19960) 4082824..4083117 - 294 WP_001143724.1 DUF1778 domain-containing protein Antitoxin Detail
PVA80_RS19970 (PVA80_19965) 4083544..4084557 - 1014 WP_000449622.1 Tyrosine recombinase XerC ; Integrase Integrase
PVA80_RS19975 (PVA80_19970) 4084972..4086309 - 1338 WP_234818495.1 TraI domain-containing protein -
PVA80_RS19980 (PVA80_19975) 4086293..4087804 - 1512 WP_001120833.1 UvrD-helicase domain-containing protein -
PVA80_RS19985 (PVA80_19980) 4088658..4089197 + 540 WP_001210944.1 Vi polysaccharide biosynthesis regulator TviA -
PVA80_RS19990 (PVA80_19985) 4089442..4090719 + 1278 WP_000466893.1 UDP-N-acetyl-D-glucosamine 6-dehydrogenase VF
PVA80_RS19995 (PVA80_19990) 4090722..4091768 + 1047 WP_000127915.1 UDP-N-acetylglucosamine 4-epimerase VF
PVA80_RS20000 (PVA80_19995) 4091792..4094287 + 2496 WP_010989299.1 hypothetical protein VF
PVA80_RS20005 (PVA80_20000) 4094287..4096023 + 1737 WP_000632616.1 hypothetical protein VF
PVA80_RS20010 (PVA80_20005) 4096068..4097135 + 1068 WP_000720235.1 hypothetical protein VF
PVA80_RS20015 (PVA80_20010) 4097145..4097939 + 795 WP_001023498.1 hypothetical protein VF
PVA80_RS20020 (PVA80_20015) 4097965..4098660 + 696 WP_000467404.1 Polysialic acid transport ATP-binding protein KpsT VF
PVA80_RS20025 (PVA80_20020) 4098683..4099987 + 1305 WP_000431675.1 hypothetical protein VF
PVA80_RS20030 (PVA80_20025) 4100007..4101977 + 1971 WP_000052242.1 hypothetical protein VF
PVA80_RS20035 (PVA80_20030) 4102279..4103025 - 747 WP_000354257.1 class I SAM-dependent methyltransferase -
PVA80_RS20040 (PVA80_20035) 4103025..4103915 - 891 WP_001681808.1 class I SAM-dependent methyltransferase -
PVA80_RS20045 (PVA80_20040) 4103926..4104183 - 258 WP_001681810.1 YjhX family toxin -
PVA80_RS20050 (PVA80_20045) 4104485..4104595 - 111 Protein_3925 autoinducer 2 ABC transporter substrate-binding protein -
PVA80_RS20055 (PVA80_20050) 4104830..4105174 + 345 Protein_3926 translesion error-prone DNA polymerase V autoproteolytic subunit -
PVA80_RS20060 (PVA80_20055) 4105290..4106315 - 1026 WP_000027757.1 Tyrosine recombinase XerC ; Integrase Integrase
PVA80_RS20065 (PVA80_20060) 4106319..4106951 - 633 WP_000052560.1 helix-turn-helix domain-containing protein -
PVA80_RS20070 (PVA80_20065) 4107068..4107310 + 243 WP_000102106.1 Rha family transcriptional regulator -
PVA80_RS20075 (PVA80_20070) 4107343..4107852 + 510 WP_000460852.1 phage regulatory CII family protein -
PVA80_RS20080 (PVA80_20075) 4107860..4108060 + 201 WP_000956167.1 DUF2724 domain-containing protein -
PVA80_RS20085 (PVA80_20080) 4108024..4108365 + 342 WP_000963479.1 DUF5347 family protein -
PVA80_RS20090 (PVA80_20085) 4108433..4108666 + 234 WP_001244240.1 DUF2732 family protein -
PVA80_RS20095 (PVA80_20090) 4108666..4108893 + 228 WP_000785510.1 TraR/DksA family transcriptional regulator -
PVA80_RS20100 (PVA80_20095) 4108890..4109474 + 585 WP_001090717.1 exonuclease domain-containing protein -
PVA80_RS20105 (PVA80_20100) 4109471..4110331 + 861 WP_000104130.1 DNA adenine methylase -
PVA80_RS20110 (PVA80_20105) 4110322..4112730 + 2409 WP_000301193.1 replication endonuclease -
PVA80_RS20115 (PVA80_20110) 4112898..4113086 + 189 WP_001154438.1 hypothetical protein -
PVA80_RS20120 (PVA80_20115) 4113098..4113331 + 234 WP_001217561.1 DinI family protein -
PVA80_RS20125 (PVA80_20120) 4113427..4113645 + 219 WP_000835188.1 hypothetical protein -
PVA80_RS20130 (PVA80_20125) 4113655..4114719 + 1065 WP_000829584.1 hypothetical protein -
PVA80_RS20135 (PVA80_20130) 4114716..4115780 + 1065 WP_000789323.1 hypothetical protein -
PVA80_RS20140 (PVA80_20135) 4115800..4116495 + 696 WP_000080839.1 hypothetical protein -
PVA80_RS20145 (PVA80_20140) 4116544..4117587 - 1044 WP_057492965.1 phage portal protein -
PVA80_RS20150 (PVA80_20145) 4117587..4119353 - 1767 WP_001098453.1 terminase ATPase subunit family protein -
PVA80_RS20155 (PVA80_20150) 4119496..4120329 + 834 WP_000216272.1 GPO family capsid scaffolding protein -
PVA80_RS20160 (PVA80_20155) 4120346..4121410 + 1065 WP_000730751.1 phage major capsid protein, P2 family -
PVA80_RS20165 (PVA80_20160) 4121414..4122064 + 651 WP_000059175.1 terminase endonuclease subunit -
PVA80_RS20170 (PVA80_20165) 4122158..4122622 + 465 WP_000673540.1 head completion/stabilization protein -
PVA80_RS20175 (PVA80_20170) 4122622..4122825 + 204 WP_000868184.1 tail protein X -
PVA80_RS20180 (PVA80_20175) 4122829..4123044 + 216 WP_000171566.1 HP1 family phage holin -
PVA80_RS20185 (PVA80_20180) 4123025..4123534 + 510 WP_001097942.1 lysozyme -
PVA80_RS20190 (PVA80_20185) 4123539..4123916 + 378 WP_000731034.1 DNZ54_00345 family protein -
PVA80_RS20195 (PVA80_20190) 4123913..4124341 + 429 WP_024131238.1 Rz-like lysis system protein LysB -
PVA80_RS20200 (PVA80_20195) 4124226..4124474 + 249 WP_223229656.1 Rz1-like lysis system protein LysC -
PVA80_RS20205 (PVA80_20200) 4124437..4124868 + 432 WP_001039961.1 phage tail protein -
PVA80_RS20210 (PVA80_20205) 4124861..4125307 + 447 WP_000343944.1 phage virion morphogenesis protein -
PVA80_RS20215 (PVA80_20210) 4125376..4125954 + 579 WP_000993749.1 phage baseplate assembly protein V -
PVA80_RS20220 (PVA80_20215) 4125951..4126310 + 360 WP_000177408.1 GPW/gp25 family protein -
PVA80_RS20225 (PVA80_20220) 4126297..4127205 + 909 WP_000268327.1 baseplate assembly protein -
PVA80_RS20230 (PVA80_20225) 4127198..4127803 + 606 WP_001086816.1 phage tail protein I -
PVA80_RS20235 (PVA80_20230) 4127800..4129419 + 1620 WP_000104806.1 phage tail protein -
PVA80_RS20240 (PVA80_20235) 4129426..4129833 + 408 WP_000006337.1 tail fiber assembly protein -
PVA80_RS20245 (PVA80_20240) 4130031..4130753 - 723 WP_000161708.1 Guanine nucleotide exchange factor SopE VF
PVA80_RS20250 (PVA80_20245) 4130964..4131185 + 222 Protein_3965 helix-turn-helix domain-containing protein -
PVA80_RS20255 (PVA80_20250) 4131288..4132460 + 1173 WP_000046101.1 phage tail sheath protein -
PVA80_RS20260 (PVA80_20255) 4132470..4132985 + 516 WP_001207653.1 phage major tail tube protein -
PVA80_RS20265 (PVA80_20260) 4133040..4133342 + 303 WP_001280965.1 phage tail assembly protein -
PVA80_RS20270 (PVA80_20265) 4133357..4133476 + 120 WP_000763315.1 GpE family phage tail protein -
PVA80_RS20275 (PVA80_20270) 4133469..4136249 + 2781 WP_001282813.1 phage tail tape measure protein -
PVA80_RS20280 (PVA80_20275) 4136249..4136734 + 486 WP_000980405.1 phage tail protein -
PVA80_RS20285 (PVA80_20280) 4136731..4137831 + 1101 WP_001011750.1 phage late control D family protein -
PVA80_RS20290 (PVA80_20285) 4137899..4138117 + 219 WP_001775272.1 ogr/Delta-like zinc finger family protein -
PVA80_RS20295 (PVA80_20290) 4138204..4138581 - 378 WP_001039750.1 hypothetical protein -
PVA80_RS20300 (PVA80_20295) 4138715..4138801 + 87 Protein_3975 peptidase -
PVA80_RS20305 (PVA80_20300) 4138801..4140075 + 1275 WP_000457555.1 Y-family DNA polymerase -
PVA80_RS20310 (PVA80_20305) 4140207..4140476 + 270 WP_001222413.1 hypothetical protein -
PVA80_RS20315 (PVA80_20310) 4140576..4140902 - 327 WP_000911568.1 DUF3085 domain-containing protein -
PVA80_RS20320 (PVA80_20315) 4140977..4141876 - 900 WP_000022217.1 hypothetical protein -
PVA80_RS20325 (PVA80_20320) 4141950..4142858 - 909 WP_000881183.1 hypothetical protein -
PVA80_RS20330 (PVA80_20325) 4142930..4144879 - 1950 WP_001097965.1 zincin-like metallopeptidase domain-containing protein -
PVA80_RS20335 (PVA80_20330) 4144968..4145426 - 459 WP_000115421.1 hypothetical protein -
PVA80_RS20340 (PVA80_20335) 4145504..4145800 - 297 WP_000968700.1 hypothetical protein -
PVA80_RS20345 (PVA80_20340) 4145797..4146249 - 453 WP_000979718.1 hypothetical protein -
PVA80_RS20350 (PVA80_20345) 4146267..4146476 - 210 WP_000018145.1 hypothetical protein -
PVA80_RS20355 (PVA80_20350) 4146847..4147227 - 381 WP_001103837.1 hypothetical protein -
PVA80_RS20360 (PVA80_20355) 4147323..4147625 - 303 WP_001020123.1 hypothetical protein -
PVA80_RS20365 (PVA80_20360) 4148349..4149269 - 921 WP_000907593.1 hypothetical protein ; Integrase Integrase
PVA80_RS20370 (PVA80_20365) 4150535..4151077 + 543 WP_010989295.1 DUF1062 domain-containing protein -
PVA80_RS20375 (PVA80_20370) 4151288..4151929 - 642 WP_000502502.1 ParB N-terminal domain-containing protein -
PVA80_RS20380 (PVA80_20375) 4151914..4153161 - 1248 WP_001283066.1 phosphoadenosine phosphosulfate reductase -
PVA80_RS20385 (PVA80_20380) 4153449..4153808 + 360 WP_010989293.1 hypothetical protein -
PVA80_RS20390 (PVA80_20385) 4154457..4155962 - 1506 WP_000213770.1 conjugal transfer protein TraG N-terminal domain-containing protein -
PVA80_RS20395 (PVA80_20390) 4156295..4157692 - 1398 WP_014341560.1 integrating conjugative element protein -
PVA80_RS20400 (PVA80_20395) 4157740..4158708 - 969 WP_000838927.1 TIGR03756 family integrating conjugative element protein -
PVA80_RS20405 (PVA80_20400) 4158705..4159097 - 393 WP_000821941.1 TIGR03757 family integrating conjugative element protein -
PVA80_RS20410 (PVA80_20405) 4159252..4159638 - 387 WP_000054770.1 hypothetical protein -
PVA80_RS20415 (PVA80_20410) 4159793..4162509 - 2717 Protein_3998 conjugative transfer ATPase -
PVA80_RS20420 (PVA80_20415) 4162629..4163078 - 450 WP_000244536.1 TIGR03751 family conjugal transfer lipoprotein -
PVA80_RS20425 (PVA80_20420) 4163065..4164543 - 1479 WP_001165842.1 TIGR03752 family integrating conjugative element protein -
PVA80_RS20430 (PVA80_20425) 4164533..4165432 - 900 WP_001240640.1 TIGR03749 family integrating conjugative element protein -
PVA80_RS20435 (PVA80_20430) 4165432..4166085 - 654 WP_000086082.1 TIGR03746 family integrating conjugative element protein -
PVA80_RS20440 (PVA80_20435) 4166082..4166456 - 375 WP_000848326.1 TIGR03750 family conjugal transfer protein -
PVA80_RS20445 (PVA80_20440) 4166466..4166831 - 366 WP_223228898.1 TIGR03745 family integrating conjugative element membrane protein -
PVA80_RS20450 (PVA80_20445) 4166858..4167091 - 234 WP_015899494.1 TIGR03758 family integrating conjugative element protein -
PVA80_RS20455 (PVA80_20450) 4167097..4167351 - 255 WP_000252871.1 RAQPRD family integrative conjugative element protein -
PVA80_RS20460 (PVA80_20455) 4167588..4168345 - 758 Protein_4007 TIGR03747 family integrating conjugative element membrane protein -
PVA80_RS20465 (PVA80_20460) 4168342..4170432 - 2091 WP_000071290.1 type IV conjugative transfer system coupling protein TraD -
PVA80_RS20470 (PVA80_20465) 4170452..4171021 - 570 WP_000626967.1 restriction endonuclease -
PVA80_RS20475 (PVA80_20470) 4171031..4171531 - 501 WP_000253629.1 integrating conjugative element protein -
PVA80_RS20480 (PVA80_20475) 4171567..4172253 - 687 WP_000013624.1 hypothetical protein VF
PVA80_RS20485 (PVA80_20480) 4172232..4172972 - 741 WP_001768408.1 TIGR03759 family integrating conjugative element protein -
PVA80_RS20490 (PVA80_20485) 4172991..4173905 - 915 WP_000214158.1 hypothetical protein -
PVA80_RS20495 (PVA80_20490) 4173862..4174224 - 363 WP_001149494.1 hypothetical protein -
PVA80_RS20500 (PVA80_20495) 4174412..4175287 - 876 WP_000994659.1 hypothetical protein -
PVA80_RS20505 (PVA80_20500) 4175499..4175966 - 468 WP_000455463.1 hypothetical protein -
PVA80_RS20510 (PVA80_20505) 4176063..4177214 - 1152 WP_000089603.1 Tyrosine recombinase XerC ; Integrase Integrase
PVA80_RS20515 (PVA80_20510) 4177562..4178869 - 1308 WP_000744276.1 hypothetical protein VF
PVA80_RS20520 (PVA80_20515) 4178866..4179528 - 663 WP_000218700.1 hypothetical protein VF
PVA80_RS20525 (PVA80_20520) 4179525..4179968 - 444 WP_223228896.1 hypothetical protein VF
PVA80_RS20530 (PVA80_20525) 4180011..4180607 - 597 WP_024131234.1 hypothetical protein VF
PVA80_RS20535 (PVA80_20530) 4180646..4181731 - 1086 WP_000074784.1 hypothetical protein VF
PVA80_RS20540 (PVA80_20535) 4181728..4183443 - 1716 WP_001289222.1 hypothetical protein VF
PVA80_RS20545 (PVA80_20540) 4183453..4183833 - 381 WP_014341558.1 hypothetical protein VF
PVA80_RS20550 (PVA80_20545) 4184021..4185307 - 1287 WP_000763621.1 hypothetical protein VF
PVA80_RS20555 (PVA80_20550) 4185309..4185647 - 339 WP_048657783.1 Outer membrane lipoprotein BfpB VF
PVA80_RS20560 (PVA80_20555) 4185613..4186548 - 936 WP_049783585.1 hypothetical protein VF
PVA80_RS20565 (PVA80_20560) 4187019..4187438 - 420 WP_000539682.1 hypothetical protein VF
PVA80_RS20570 (PVA80_20565) 4187441..4188685 - 1245 WP_057492783.1 hypothetical protein VF
PVA80_RS20575 (PVA80_20570) 4188850..4189800 - 951 Protein_4030 ISNCY family transposase ISPlu22 VF
PVA80_RS20580 (PVA80_20575) 4189866..4190402 - 537 WP_000157067.1 single-stranded DNA-binding protein -
PVA80_RS20585 (PVA80_20580) 4190415..4190633 - 219 WP_000958171.1 hypothetical protein -
PVA80_RS20590 (PVA80_20585) 4190714..4191163 - 450 WP_000032521.1 STY4534 family ICE replication protein -
PVA80_RS20595 (PVA80_20590) 4191831..4193825 - 1995 WP_001241572.1 DNA topoisomerase III -
PVA80_RS20600 (PVA80_20595) 4193936..4194712 - 777 WP_001290445.1 TIGR03761 family integrating conjugative element protein -
PVA80_RS20605 (PVA80_20600) 4195301..4196611 - 1311 WP_001194350.1 STY4528 family pathogenicity island replication protein -
PVA80_RS20610 (PVA80_20605) 4196641..4196889 - 249 WP_000377625.1 hypothetical protein -
PVA80_RS20615 (PVA80_20610) 4196889..4197446 - 558 WP_000144322.1 DUF2857 domain-containing protein -
PVA80_RS20620 (PVA80_20615) 4197531..4198253 - 723 WP_001275616.1 DUF2786 domain-containing protein -
PVA80_RS20625 (PVA80_20620) 4198240..4198500 - 261 WP_000838568.1 hypothetical protein -
PVA80_RS20630 (PVA80_20625) 4198714..4200513 - 1800 WP_001029724.1 ParB family protein -
PVA80_RS20635 (PVA80_20630) 4200506..4201870 - 1365 WP_000018526.1 SPI-7-type island replicative DNA helicase -
PVA80_RS20640 (PVA80_20635) 4201867..4202901 - 1035 WP_001195363.1 hypothetical protein VF
PVA80_RS20645 (PVA80_20640) 4203196..4203835 + 640 Protein_4044 integrase arm-type DNA-binding domain-containing protein -
PVA80_RS20650 (PVA80_20645) 4205130..4205447 + 318 WP_001141622.1 PAAR domain-containing protein -
PVA80_RS20655 (PVA80_20650) 4205444..4205710 + 267 WP_000768134.1 bacteriocin immunity protein -
PVA80_RS20660 (PVA80_20655) 4205953..4206231 + 279 WP_000421096.1 bacteriocin immunity protein -
PVA80_RS20665 (PVA80_20660) 4206634..4207137 + 504 WP_001151810.1 hypothetical protein -
PVA80_RS20670 (PVA80_20665) 4207396..4207581 + 186 WP_001681937.1 DUF3289 family protein -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance