MGE detailed information
MGE type: Prophage MGE length: 118529 bp
Accession: NZ_CP117398 Location: 3652517..3771045 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM015 Replicon: chromosome
Accession: NZ_CP117398 Location: 3652517..3771045 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM015 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ09_RS18040 () | 3648271..3649275 | - | 1005 | WP_000074605.1 | ferrioxamine uptake transcriptional regulator FoxR | - |
| PQQ09_RS18045 () | 3649371..3649595 | - | 225 | WP_001541927.1 | membrane protein | - |
| PQQ09_RS18050 () | 3649612..3650622 | - | 1011 | WP_000151047.1 | cytochrome d ubiquinol oxidase subunit II | - |
| PQQ09_RS18055 () | 3650619..3652022 | - | 1404 | WP_000393711.1 | cytochrome ubiquinol oxidase subunit I | - |
| PQQ09_RS18060 () | 3652139..3652240 | - | 102 | WP_000934834.1 | small effector SsaA | - |
| PQQ09_RS18065 () | 3652517..3655489 | - | 2973 | WP_001651666.1 | type III restriction-modification system endonuclease | - |
| PQQ09_RS18070 () | 3655499..3657457 | - | 1959 | WP_000910371.1 | site-specific DNA-methyltransferase | - |
| PQQ09_RS18075 () | 3657646..3658899 | - | 1254 | WP_000288496.1 | MFS transporter | - |
| PQQ09_RS18080 () | 3659192..3659386 | - | 195 | WP_001159470.1 | gold resistance metallochaperone GolB | - |
| PQQ09_RS18085 () | 3659464..3659928 | - | 465 | WP_001020583.1 | Au(I) sensor transcriptional regulator GolS | - |
| PQQ09_RS18090 () | 3659940..3662228 | - | 2289 | WP_000083318.1 | gold/copper-translocating P-type ATPase GolT | - |
| PQQ09_RS18095 () | 3662505..3663731 | + | 1227 | WP_023173532.1 | hypothetical protein | VF |
| PQQ09_RS18100 () | 3663728..3666895 | + | 3168 | WP_000673160.1 | hypothetical protein | VF |
| PQQ09_RS18105 () | 3666912..3668369 | + | 1458 | WP_001521068.1 | hypothetical protein | VF |
| PQQ09_RS18110 () | 3668439..3668798 | - | 360 | WP_000722978.1 | DUF4156 domain-containing protein | - |
| PQQ09_RS18115 () | 3668856..3669080 | - | 225 | WP_000737127.1 | membrane protein | - |
| PQQ09_RS18120 () | 3669091..3669732 | - | 642 | WP_000610820.1 | helix-turn-helix transcriptional regulator | - |
| PQQ09_RS18125 () | 3669876..3670400 | - | 525 | WP_000830237.1 | hypothetical protein | VF |
| PQQ09_RS18130 () | 3670802..3671290 | - | 489 | WP_000545421.1 | hypothetical protein | - |
| PQQ09_RS18135 () | 3671263..3672006 | - | 744 | WP_000081378.1 | hypothetical protein | VF |
| PQQ09_RS18140 () | 3672106..3673680 | - | 1575 | WP_000868285.1 | hypothetical protein | VF |
| PQQ09_RS18145 () | 3674180..3674480 | - | 301 | Protein_3548 | hypothetical protein | - |
| PQQ09_RS18150 () | 3674453..3675187 | - | 735 | WP_001006010.1 | hypothetical protein | VF |
| PQQ09_RS18155 () | 3675851..3676387 | + | 537 | WP_000062035.1 | hypothetical protein | VF |
| PQQ09_RS18160 () | 3676449..3677210 | + | 762 | WP_000781488.1 | hypothetical protein | VF |
| PQQ09_RS18165 () | 3677194..3679755 | + | 2562 | WP_000075342.1 | hypothetical protein | VF |
| PQQ09_RS18170 () | 3679760..3681085 | + | 1326 | WP_000899100.1 | fimbrial usher protein StbD | - |
| PQQ09_RS18175 () | 3681051..3681809 | + | 759 | WP_001247039.1 | hypothetical protein | VF |
| PQQ09_RS18180 () | 3681856..3682254 | - | 399 | WP_000766837.1 | outer membrane protein | - |
| PQQ09_RS18185 () | 3682945..3683217 | + | 273 | WP_001675688.1 | hypothetical protein | - |
| PQQ09_RS18190 () | 3683162..3684127 | - | 966 | WP_000859023.1 | LysR family transcriptional regulator | - |
| PQQ09_RS18195 () | 3684161..3685075 | - | 915 | WP_000105593.1 | alpha/beta hydrolase | - |
| PQQ09_RS18200 () | 3685075..3685953 | - | 879 | WP_000780210.1 | fumarylacetoacetate hydrolase family protein | - |
| PQQ09_RS18205 () | 3685968..3686594 | - | 627 | WP_000379343.1 | 3-isopropylmalate dehydratase small subunit | - |
| PQQ09_RS18210 () | 3686596..3688017 | - | 1422 | WP_001274854.1 | 3-isopropylmalate dehydratase large subunit | - |
| PQQ09_RS18215 () | 3688149..3689387 | - | 1239 | WP_012543325.1 | MFS transporter | - |
| PQQ09_RS18220 () | 3689728..3690051 | - | 324 | WP_001539227.1 | DUF1889 family protein | - |
| PQQ09_RS18225 () | 3690161..3690875 | - | 715 | Protein_3564 | diol dehydratase reactivase ATPase-like domain-containing protein | - |
| PQQ09_RS18230 () | 3690877..3691656 | + | 780 | Protein_3565 | IS3 family transposase | - |
| PQQ09_RS18235 () | 3692253..3692615 | + | 363 | WP_000915523.1 | hypothetical protein | VF |
| PQQ09_RS18240 () | 3692612..3693544 | + | 933 | WP_016048813.1 | hypothetical protein | VF |
| PQQ09_RS18245 () | 3693534..3694991 | + | 1458 | WP_016048812.1 | glucosyltransferase domain-containing protein | - |
| PQQ09_RS18250 () | 3695050..3697053 | - | 2004 | WP_016048838.1 | tail spike protein | - |
| PQQ09_RS18255 () | 3697189..3697437 | + | 249 | WP_000532177.1 | Arc family DNA-binding protein | - |
| PQQ09_RS18260 () | 3697458..3697751 | - | 294 | WP_071533035.1 | hypothetical protein | - |
| PQQ09_RS18265 () | 3697890..3699821 | - | 1932 | WP_016048837.1 | hypothetical protein | - |
| PQQ09_RS18270 () | 3699821..3701191 | - | 1371 | WP_031252729.1 | phage DNA ejection protein | - |
| PQQ09_RS18275 () | 3701201..3701890 | - | 690 | WP_006819472.1 | hypothetical protein | - |
| PQQ09_RS18280 () | 3701893..3702348 | - | 456 | WP_016048835.1 | DUF2824 family protein | - |
| PQQ09_RS18285 () | 3702348..3703049 | - | 702 | WP_016048834.1 | hypothetical protein | - |
| PQQ09_RS18290 () | 3703053..3704471 | - | 1419 | WP_010835892.1 | packaged DNA stabilization protein gp10 | - |
| PQQ09_RS18295 () | 3704431..3704931 | - | 501 | WP_010835893.1 | packaged DNA stabilization gp4 family protein | - |
| PQQ09_RS18300 () | 3704915..3705124 | - | 210 | WP_010835894.1 | hypothetical protein | - |
| PQQ09_RS18305 () | 3705163..3706455 | - | 1293 | WP_010835895.1 | P22 phage major capsid protein family protein | - |
| PQQ09_RS18310 () | 3706455..3707366 | - | 912 | WP_000433852.1 | scaffold protein | - |
| PQQ09_RS18315 () | 3707380..3709554 | - | 2175 | WP_010835896.1 | portal protein | - |
| PQQ09_RS18320 () | 3709555..3711054 | - | 1500 | WP_010835897.1 | terminase family protein | - |
| PQQ09_RS18325 () | 3711032..3711520 | - | 489 | WP_000729925.1 | terminase small subunit | - |
| PQQ09_RS18330 () | 3711524..3711928 | - | 405 | WP_016048833.1 | hypothetical protein | - |
| PQQ09_RS18335 () | 3711931..3712173 | - | 243 | WP_000808100.1 | DUF2560 family protein | - |
| PQQ09_RS18340 () | 3712484..3713170 | - | 687 | WP_016048832.1 | Rha family transcriptional regulator | - |
| PQQ09_RS18345 () | 3713383..3713850 | - | 468 | WP_010835883.1 | lysis protein | - |
| PQQ09_RS18350 () | 3713847..3714344 | - | 498 | WP_023890940.1 | lysozyme | - |
| PQQ09_RS18355 () | 3714322..3714525 | - | 204 | WP_000286100.1 | phage holin family protein | - |
| PQQ09_RS18370 () | 3714989..3715507 | - | 519 | WP_000027541.1 | antiterminator Q family protein | - |
| PQQ09_RS18375 () | 3715504..3715683 | - | 180 | WP_016048830.1 | hypothetical protein | - |
| PQQ09_RS18380 () | 3715664..3715867 | - | 204 | WP_000149880.1 | IS21 family transposase ISXci1 | Transposase |
| PQQ09_RS18385 () | 3715864..3716433 | - | 570 | WP_001287665.1 | HNH endonuclease | - |
| PQQ09_RS18390 () | 3716430..3716825 | - | 396 | WP_016048829.1 | RusA family crossover junction endodeoxyribonuclease | - |
| PQQ09_RS18395 () | 3716822..3717112 | - | 291 | WP_000002244.1 | DUF1364 domain-containing protein | - |
| PQQ09_RS18400 () | 3717112..3717381 | - | 270 | WP_010835879.1 | hypothetical protein | - |
| PQQ09_RS18405 () | 3717374..3717550 | - | 177 | WP_010835878.1 | protein NinF | - |
| PQQ09_RS18410 () | 3717543..3717884 | - | 342 | WP_016048828.1 | DUF2591 family protein | - |
| PQQ09_RS18415 () | 3717887..3718063 | - | 177 | WP_016048827.1 | NinE family protein | - |
| PQQ09_RS18420 () | 3718030..3718203 | - | 174 | WP_023890941.1 | protein NinD | - |
| PQQ09_RS18425 () | 3718200..3718637 | - | 438 | WP_016048826.1 | recombination protein NinB | - |
| PQQ09_RS18430 () | 3718862..3719368 | - | 507 | WP_016048824.1 | hypothetical protein | - |
| PQQ09_RS18435 () | 3719386..3719583 | - | 198 | WP_016048823.1 | hypothetical protein | - |
| PQQ09_RS18440 () | 3719598..3719804 | - | 207 | WP_000248681.1 | hypothetical protein | - |
| PQQ09_RS18445 () | 3719877..3721253 | - | 1377 | WP_016048822.1 | replicative DNA helicase | - |
| PQQ09_RS18450 () | 3721250..3722071 | - | 822 | WP_010835877.1 | replication protein | - |
| PQQ09_RS18455 () | 3722058..3722219 | - | 162 | WP_000166968.1 | hypothetical protein | - |
| PQQ09_RS18460 () | 3722240..3722530 | - | 291 | WP_000424138.1 | CII family transcriptional regulator | - |
| PQQ09_RS18465 () | 3722664..3722873 | - | 210 | WP_001059982.1 | ISNCY family transposase ISH7A | Transposase |
| PQQ09_RS18470 () | 3722983..3723636 | + | 654 | WP_001104735.1 | LexA family transcriptional regulator | - |
| PQQ09_RS18475 () | 3723806..3724849 | + | 1044 | WP_001280609.1 | P63C domain-containing protein | - |
| PQQ09_RS18480 () | 3724888..3725091 | - | 204 | WP_000834165.1 | hypothetical protein | - |
| PQQ09_RS18485 () | 3725423..3725806 | + | 384 | WP_016048819.1 | hypothetical protein | - |
| PQQ09_RS18490 () | 3725827..3726405 | - | 579 | WP_023890943.1 | superinfection exclusion B family protein | - |
| PQQ09_RS18495 () | 3726549..3726914 | + | 366 | WP_010835874.1 | hypothetical protein | - |
| PQQ09_RS18500 () | 3727154..3727324 | + | 171 | WP_001183771.1 | hypothetical protein | - |
| PQQ09_RS18505 () | 3727409..3727597 | + | 189 | WP_016048818.1 | hypothetical protein | - |
| PQQ09_RS18510 () | 3727606..3728313 | + | 708 | WP_010835873.1 | Rad52/Rad22 family DNA repair protein | - |
| PQQ09_RS18515 () | 3728313..3728597 | + | 285 | WP_016048817.1 | sigma-70 family RNA polymerase sigma factor | - |
| PQQ09_RS18520 () | 3728644..3728937 | + | 294 | WP_010835872.1 | DUF2856 family protein | - |
| PQQ09_RS18525 () | 3728948..3729235 | + | 288 | WP_010835871.1 | hypothetical protein | - |
| PQQ09_RS18530 () | 3729358..3729546 | + | 189 | WP_010835870.1 | hypothetical protein | - |
| PQQ09_RS18535 () | 3729550..3730218 | + | 669 | WP_016048815.1 | DUF551 domain-containing protein | - |
| PQQ09_RS18540 () | 3730289..3730639 | + | 351 | WP_016048814.1 | hypothetical protein | - |
| PQQ09_RS18545 () | 3730642..3730992 | + | 351 | WP_024142004.1 | helix-turn-helix domain-containing protein | - |
| PQQ09_RS18550 () | 3730914..3732032 | + | 1119 | WP_223166102.1 | hypothetical protein ; Integrase | Integrase |
| PQQ09_RS18560 () | 3732238..3733488 | - | 1251 | WP_000893231.1 | glutamate-5-semialdehyde dehydrogenase | - |
| PQQ09_RS18565 () | 3733500..3734603 | - | 1104 | WP_001285275.1 | glutamate 5-kinase | - |
| PQQ09_RS18570 () | 3734886..3735938 | + | 1053 | WP_001043675.1 | phosphoporin PhoE | - |
| PQQ09_RS18575 () | 3735989..3736390 | - | 402 | WP_000174696.1 | sigma factor-binding protein Crl | - |
| PQQ09_RS18580 () | 3736448..3737692 | - | 1245 | WP_000189588.1 | esterase FrsA | - |
| PQQ09_RS18585 () | 3737781..3738239 | - | 459 | WP_001292018.1 | xanthine phosphoribosyltransferase | - |
| PQQ09_RS18590 () | 3738488..3739945 | + | 1458 | WP_001292977.1 | cytosol nonspecific dipeptidase | - |
| PQQ09_RS18595 () | 3740101..3740715 | - | 615 | WP_000602086.1 | peptide chain release factor H | - |
| PQQ09_RS18600 () | 3740712..3741844 | - | 1133 | Protein_3636 | RNA ligase RtcB family protein | - |
| PQQ09_RS18605 () | 3742063..3743118 | - | 1056 | WP_001226198.1 | DNA polymerase IV | - |
| PQQ09_RS18610 () | 3743368..3744108 | + | 741 | WP_001225658.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| PQQ09_RS18615 () | 3744079..3744846 | - | 768 | WP_000333387.1 | class II glutamine amidotransferase | - |
| PQQ09_RS18620 () | 3745059..3745637 | - | 579 | WP_000284051.1 | hypothetical protein | VF |
| PQQ09_RS18625 () | 3745877..3748321 | + | 2445 | WP_000973041.1 | hypothetical protein | VF |
| PQQ09_RS18630 () | 3748430..3749197 | + | 768 | WP_000015789.1 | amidohydrolase | - |
| PQQ09_RS18635 () | 3749568..3749975 | + | 408 | WP_000788200.1 | Spy/CpxP family protein refolding chaperone | - |
| PQQ09_RS18640 () | 3750306..3751025 | + | 720 | WP_000787603.1 | hypothetical protein | VF |
| PQQ09_RS18645 () | 3751029..3751244 | - | 216 | WP_001575654.1 | hypothetical protein | - |
| PQQ09_RS18650 () | 3751361..3752308 | - | 948 | WP_023173520.1 | LysR family transcriptional regulator | - |
| PQQ09_RS18655 () | 3752800..3753040 | - | 241 | Protein_3647 | PerC family transcriptional regulator | - |
| PQQ09_RS18660 () | 3753123..3753944 | - | 822 | WP_000119390.1 | polysaccharide deacetylase family protein | - |
| PQQ09_RS18665 () | 3754350..3754820 | - | 471 | WP_000266939.1 | AfaD family invasin | - |
| PQQ09_RS18670 () | 3754842..3757352 | - | 2511 | WP_000669635.1 | hypothetical protein | VF |
| PQQ09_RS18675 () | 3757376..3758113 | - | 738 | WP_001535430.1 | hypothetical protein | VF |
| PQQ09_RS18680 () | 3758197..3758709 | - | 513 | WP_077905298.1 | pilus assembly protein | - |
| PQQ09_RS18685 () | 3759459..3760163 | - | 705 | Protein_3653 | integrase core domain-containing protein | - |
| PQQ09_RS18690 () | 3760216..3760464 | + | 249 | WP_001738030.1 | SymE family type I addiction module toxin | - |
| PQQ09_RS18695 () | 3760566..3760874 | - | 309 | WP_010988969.1 | hypothetical protein | - |
| PQQ09_RS18700 () | 3760957..3761073 | - | 117 | WP_227457392.1 | hypothetical protein | - |
| - | 3761158..3761580 | - | 423 | - | - | Antitoxin Detail |
| PQQ09_RS18705 () | 3761315..3761590 | + | 276 | WP_000994224.1 | SymE family type I addiction module toxin | Toxin Detail |
| PQQ09_RS18710 () | 3761643..3762080 | - | 438 | WP_000943619.1 | immunity 26/phosphotriesterase HocA family protein | - |
| PQQ09_RS18715 () | 3762643..3763089 | - | 447 | WP_000935097.1 | protein SciX | - |
| PQQ09_RS18720 () | 3763083..3763952 | - | 870 | Protein_3660 | hypothetical protein | VF |
| PQQ09_RS18725 () | 3764016..3764279 | - | 264 | WP_000932531.1 | hypothetical protein | - |
| PQQ09_RS18730 () | 3764273..3768367 | - | 4095 | WP_000272656.1 | RHS repeat-associated core domain-containing protein | - |
| PQQ09_RS18735 () | 3768386..3768832 | - | 447 | WP_000375832.1 | DcrB-related protein | - |
| PQQ09_RS18740 () | 3768856..3771045 | - | 2190 | WP_000011534.1 | hypothetical protein | VF |
| PQQ09_RS18745 () | 3771442..3771963 | - | 522 | WP_000968384.1 | DUF2778 domain-containing protein | - |
| PQQ09_RS18750 () | 3771987..3772403 | - | 417 | WP_001596567.1 | DUF2195 family protein | - |
| PQQ09_RS18755 () | 3772400..3773188 | - | 789 | WP_001254137.1 | TagF domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|