MGE detailed information
MGE type: Prophage MGE length: 32941 bp
Accession: NZ_CP117398 Location: 290041..322981 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM015 Replicon: chromosome
Accession: NZ_CP117398 Location: 290041..322981 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM015 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ09_RS01295 (285273) | 285273..285608 | + | 336 | WP_000626193.1 | universal stress protein UspB | - |
| PQQ09_RS01300 (285748) | 285748..287244 | - | 1497 | WP_000902764.1 | inorganic phosphate transporter PitA | - |
| PQQ09_RS01305 (287475) | 287475..288671 | + | 1197 | WP_000439219.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| PQQ09_RS01310 (288977) | 288977..290044 | + | 1068 | WP_000359836.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| PQQ09_RS01315 (290041) | 290041..292782 | + | 2742 | WP_000202926.1 | ribosome-associated ATPase/putative transporter RbbA | - |
| PQQ09_RS01320 (292782) | 292782..293906 | + | 1125 | WP_001214750.1 | ABC transporter permease | - |
| PQQ09_RS01325 (293996) | 293996..294397 | - | 402 | WP_001190057.1 | nickel-responsive transcriptional regulator NikR | - |
| PQQ09_RS01330 (294489) | 294489..295067 | - | 579 | WP_000285376.1 | hypothetical protein | VF |
| PQQ09_RS01335 (295119) | 295119..296168 | - | 1050 | WP_000179589.1 | AI-2E family transporter | - |
| PQQ09_RS01340 (296258) | 296258..297517 | + | 1260 | WP_001576500.1 | MFS transporter | - |
| PQQ09_RS01345 (297521) | 297521..298078 | - | 558 | WP_001245277.1 | DcrB family lipoprotein | - |
| PQQ09_RS01350 (298151) | 298151..298816 | - | 666 | WP_000187489.1 | 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter | - |
| PQQ09_RS01355 (298986) | 298986..299231 | + | 246 | WP_001541054.1 | sulfurtransferase TusA | - |
| PQQ09_RS01360 (299255) | 299255..300898 | - | 1644 | WP_000789683.1 | hypothetical protein | VF |
| PQQ09_RS01365 (301098) | 301098..303296 | - | 2199 | WP_000106641.1 | Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA | - |
| PQQ09_RS01370 (303377) | 303377..304003 | - | 627 | WP_000964735.1 | lysoplasmalogenase | - |
| PQQ09_RS01375 (304145) | 304145..304516 | + | 372 | WP_000042853.1 | DUF2500 domain-containing protein | - |
| PQQ09_RS01380 (304538) | 304538..304807 | - | 270 | WP_000906757.1 | DUF1145 family protein | - |
| PQQ09_RS01385 (304797) | 304797..305393 | - | 597 | WP_000743277.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase | - |
| PQQ09_RS01390 (305519) | 305519..306994 | + | 1476 | WP_001118686.1 | hypothetical protein | VF |
| PQQ09_RS01395 (306997) | 306997..307665 | + | 669 | WP_000617729.1 | hypothetical protein | VF |
| PQQ09_RS01400 (307658) | 307658..308713 | + | 1056 | WP_001081707.1 | permease-like cell division protein FtsX | - |
| PQQ09_RS01405 (308959) | 308959..309813 | + | 855 | WP_023173920.1 | RNA polymerase sigma factor RpoH | - |
| PQQ09_RS01410 (310135) | 310135..311238 | + | 1104 | WP_001521443.1 | branched chain amino acid ABC transporter substrate-binding protein LivJ | - |
| PQQ09_RS01415 (311321) | 311321..311455 | - | 135 | WP_001517957.1 | hypothetical protein | - |
| PQQ09_RS01420 (311433) | 311433..311816 | - | 384 | WP_000778873.1 | aspartate 1-decarboxylase autocleavage activator PanM | - |
| PQQ09_RS01425 (312238) | 312238..313347 | + | 1110 | WP_000822976.1 | high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK | - |
| PQQ09_RS01430 (313407) | 313407..314333 | + | 927 | WP_000003007.1 | high-affinity branched-chain amino acid ABC transporter permease LivH | - |
| PQQ09_RS01435 (314330) | 314330..315607 | + | 1278 | WP_000803766.1 | branched chain amino acid ABC transporter permease LivM | - |
| PQQ09_RS01440 (315604) | 315604..316371 | + | 768 | WP_000082083.1 | hypothetical protein | VF |
| PQQ09_RS01445 (316373) | 316373..317086 | + | 714 | WP_000416114.1 | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | - |
| PQQ09_RS01450 (317218) | 317218..317439 | + | 222 | WP_001520924.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| PQQ09_RS01455 (317436) | 317436..317804 | + | 369 | WP_001521773.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| PQQ09_RS01460 (318063) | 318063..319379 | + | 1317 | WP_000624747.1 | sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB | - |
| PQQ09_RS01465 (319443) | 319443..320330 | + | 888 | WP_000099303.1 | sn-glycerol-3-phosphate ABC transporter permease UgpA | - |
| PQQ09_RS01470 (320327) | 320327..321172 | + | 846 | WP_000572196.1 | sn-glycerol-3-phosphate ABC transporter permease UgpE | - |
| PQQ09_RS01475 (321174) | 321174..322244 | + | 1071 | WP_000907838.1 | hypothetical protein | VF |
| PQQ09_RS01480 (322241) | 322241..322981 | + | 741 | WP_000073548.1 | glycerophosphodiester phosphodiesterase | - |
| PQQ09_RS01485 (322994) | 322994..323410 | - | 417 | WP_000826041.1 | DUF2756 family protein | - |
| PQQ09_RS01490 (323536) | 323536..325278 | + | 1743 | WP_000805096.1 | gamma-glutamyltransferase | - |
| PQQ09_RS01495 (325323) | 325323..326357 | - | 1035 | WP_000675710.1 | phosphotriesterase | - |
| PQQ09_RS01500 (326354) | 326354..327325 | - | 972 | WP_001038948.1 | DMT family transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|