MGE detailed information
MGE type: Conjugative plasmid MGE length: 100521 bp
Accession: NZ_CP117391 Location: 1..100521 Organism: Salmonella enterica subsp. enterica serovar Uganda strain RM008 Replicon: plasmid pRM008_1
Accession: NZ_CP117391 Location: 1..100521 Organism: Salmonella enterica subsp. enterica serovar Uganda strain RM008 Replicon: plasmid pRM008_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP88_RS23115 (PQP88_23115) | 1..1101 | + | 1101 | WP_000350011.1 | RepB family plasmid replication initiator protein | - |
| PQP88_RS23120 (PQP88_23120) | 2138..2572 | - | 435 | WP_000883925.1 | hypothetical protein | - |
| PQP88_RS23125 (PQP88_23125) | 2590..3705 | - | 1116 | WP_000946102.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| PQP88_RS23130 (PQP88_23130) | 3974..4582 | + | 609 | WP_000849071.1 | hypothetical protein | - |
| PQP88_RS23135 (PQP88_23135) | 4587..5108 | + | 522 | WP_000393785.1 | hypothetical protein | - |
| PQP88_RS23140 (PQP88_23140) | 5111..5632 | + | 522 | WP_000805800.1 | hypothetical protein | - |
| PQP88_RS23145 (PQP88_23145) | 5729..6202 | + | 474 | WP_000057877.1 | hypothetical protein | - |
| PQP88_RS23150 (PQP88_23150) | 6213..6506 | + | 294 | WP_001370730.1 | hypothetical protein | - |
| PQP88_RS23155 (PQP88_23155) | 6511..7365 | + | 855 | WP_000539392.1 | hypothetical protein | - |
| PQP88_RS23160 (PQP88_23160) | 7365..8324 | + | 960 | WP_000829616.1 | S49 family peptidase | - |
| PQP88_RS23165 (PQP88_23165) | 8340..9200 | + | 861 | WP_000139698.1 | DsbA family protein | - |
| PQP88_RS23170 (PQP88_23170) | 9234..9662 | + | 429 | WP_000591074.1 | hypothetical protein | - |
| PQP88_RS23175 (PQP88_23175) | 9719..10078 | + | 360 | WP_000422768.1 | hypothetical protein | - |
| PQP88_RS23180 (PQP88_23180) | 10078..10524 | + | 447 | WP_000919345.1 | Fe3+-siderophore ABC transporter permease | - |
| PQP88_RS23185 (PQP88_23185) | 10521..11039 | + | 519 | WP_000210756.1 | nitrite reductase | - |
| PQP88_RS23190 (PQP88_23190) | 11039..11269 | + | 231 | WP_000972663.1 | hypothetical protein | - |
| PQP88_RS23195 (PQP88_23195) | 11256..12113 | + | 858 | WP_001167032.1 | hypothetical protein | - |
| PQP88_RS23200 (PQP88_23200) | 12344..12871 | + | 528 | WP_001236377.1 | thermonuclease family protein | - |
| PQP88_RS23205 (PQP88_23205) | 12929..13201 | + | 273 | WP_001043047.1 | HU family DNA-binding protein | - |
| PQP88_RS23210 (PQP88_23210) | 13289..13582 | + | 294 | WP_001239997.1 | chromosome segregation protein ParM | - |
| PQP88_RS23215 (PQP88_23215) | 13609..13911 | - | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin Detail |
| PQP88_RS23220 (PQP88_23220) | 13916..14266 | - | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PQP88_RS23225 (PQP88_23225) | 14429..14977 | + | 549 | WP_001061574.1 | transcriptional regulator | - |
| PQP88_RS23230 (PQP88_23230) | 15318..15512 | + | 195 | WP_000343597.1 | hypothetical protein | - |
| PQP88_RS23235 (PQP88_23235) | 15523..15894 | + | 372 | WP_000516916.1 | hypothetical protein | - |
| PQP88_RS23240 (PQP88_23240) | 15887..16357 | + | 471 | WP_001281821.1 | hypothetical protein | - |
| PQP88_RS23245 (PQP88_23245) | 16372..16707 | - | 336 | WP_000683476.1 | hypothetical protein | - |
| PQP88_RS23250 (PQP88_23250) | 16804..17292 | + | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
| PQP88_RS23255 (PQP88_23255) | 17295..17792 | + | 498 | WP_000062185.1 | hypothetical protein | - |
| PQP88_RS23260 (PQP88_23260) | 18007..18711 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQP88_RS23265 (PQP88_23265) | 18776..18955 | - | 180 | Protein_31 | helix-turn-helix domain-containing protein | - |
| PQP88_RS23270 (PQP88_23270) | 19262..19966 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQP88_RS23275 (PQP88_23275) | 19972..20112 | + | 141 | WP_001044210.1 | hypothetical protein | - |
| PQP88_RS23280 (PQP88_23280) | 20598..21335 | + | 738 | WP_001366550.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PQP88_RS23285 (PQP88_23285) | 21332..21556 | + | 225 | WP_000743213.1 | hypothetical protein | - |
| PQP88_RS23290 (PQP88_23290) | 21767..23260 | + | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| PQP88_RS23295 (PQP88_23295) | 23291..24175 | + | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| PQP88_RS23300 (PQP88_23300) | 24392..25606 | + | 1215 | WP_000214121.1 | Bicyclomycin resistance protein | ARG |
| PQP88_RS23305 (PQP88_23305) | 25634..25939 | + | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| PQP88_RS23310 (PQP88_23310) | 26051..26239 | + | 189 | Protein_40 | IS91 family transposase | - |
| PQP88_RS23315 (PQP88_23315) | 26206..27405 | - | 1200 | WP_274890605.1 | Tetracycline resistance protein, class C | ARG |
| PQP88_RS23320 (PQP88_23320) | 27511..28161 | + | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| PQP88_RS23325 (PQP88_23325) | 28193..28435 | - | 243 | WP_000844627.1 | transposase | - |
| PQP88_RS23330 (PQP88_23330) | 28741..29577 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
| PQP88_RS23335 (PQP88_23335) | 29577..30380 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| PQP88_RS23340 (PQP88_23340) | 30441..31256 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| PQP88_RS23345 (PQP88_23345) | 31563..31874 | + | 312 | WP_000338945.1 | hypothetical protein | - |
| PQP88_RS23350 (PQP88_23350) | 32048..32833 | + | 786 | WP_274890606.1 | Sporulation initiation inhibitor protein Soj | VF |
| PQP88_RS23355 (PQP88_23355) | 32837..34018 | + | 1182 | WP_001207227.1 | KorB domain-containing protein | - |
| PQP88_RS23360 (PQP88_23360) | 34067..34339 | + | 273 | WP_000703827.1 | helix-turn-helix domain-containing protein | - |
| PQP88_RS23365 (PQP88_23365) | 34392..35027 | - | 636 | WP_000074431.1 | N-6 DNA methylase | - |
| PQP88_RS23370 (PQP88_23370) | 35119..35262 | - | 144 | WP_000939033.1 | hypothetical protein | - |
| PQP88_RS23375 (PQP88_23375) | 35589..35966 | + | 378 | WP_137516508.1 | hypothetical protein | - |
| PQP88_RS23380 (PQP88_23380) | 35959..36240 | + | 282 | WP_000044823.1 | hypothetical protein | - |
| PQP88_RS23385 (PQP88_23385) | 36215..36889 | + | 675 | WP_000344149.1 | hypothetical protein | - |
| PQP88_RS23390 (PQP88_23390) | 36882..37304 | + | 423 | WP_274890607.1 | hypothetical protein | - |
| PQP88_RS23395 (PQP88_23395) | 37390..37701 | + | 312 | WP_001447539.1 | hypothetical protein | - |
| PQP88_RS23400 (PQP88_23400) | 37710..38210 | + | 501 | WP_000647188.1 | hypothetical protein | - |
| PQP88_RS23405 (PQP88_23405) | 38214..39641 | + | 1428 | WP_000936897.1 | DNA cytosine methyltransferase | - |
| PQP88_RS23410 (PQP88_23410) | 39641..40297 | + | 657 | WP_000268552.1 | hypothetical protein | - |
| PQP88_RS23415 (PQP88_23415) | 40353..40970 | + | 618 | WP_000464630.1 | hypothetical protein | - |
| PQP88_RS23420 (PQP88_23420) | 41203..41481 | + | 279 | WP_000746034.1 | hypothetical protein | - |
| PQP88_RS23425 (PQP88_23425) | 41572..42060 | - | 489 | WP_000467110.1 | hypothetical protein | - |
| PQP88_RS23430 (PQP88_23430) | 42075..44267 | - | 2193 | WP_000366823.1 | DNA topoisomerase 3 | - |
| PQP88_RS23435 (PQP88_23435) | 44267..44500 | - | 234 | WP_001191890.1 | hypothetical protein | - |
| PQP88_RS23440 (PQP88_23440) | 44482..45099 | - | 618 | WP_001249395.1 | hypothetical protein | - |
| PQP88_RS23445 (PQP88_23445) | 45267..48239 | + | 2973 | WP_001326173.1 | hypothetical protein | Relaxase |
| PQP88_RS23450 (PQP88_23450) | 48236..50101 | + | 1866 | WP_274890608.1 | conjugative transfer system coupling protein TraD | - |
| PQP88_RS23455 (PQP88_23455) | 50151..50696 | + | 546 | WP_000228720.1 | hypothetical protein | - |
| PQP88_RS23460 (PQP88_23460) | 50653..51282 | + | 630 | WP_000743449.1 | DUF4400 domain-containing protein | - |
| PQP88_RS23465 (PQP88_23465) | 51292..51738 | + | 447 | WP_000122507.1 | hypothetical protein | - |
| PQP88_RS23470 (PQP88_23470) | 51748..52125 | + | 378 | WP_000869297.1 | hypothetical protein | - |
| PQP88_RS23475 (PQP88_23475) | 52125..52787 | + | 663 | WP_001231464.1 | hypothetical protein | - |
| PQP88_RS23480 (PQP88_23480) | 53123..53488 | + | 366 | WP_001052530.1 | hypothetical protein | - |
| PQP88_RS23485 (PQP88_23485) | 53633..53914 | + | 282 | WP_000805625.1 | type IV conjugative transfer system protein TraL | - |
| PQP88_RS23490 (PQP88_23490) | 53911..54537 | + | 627 | WP_001049717.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| PQP88_RS23495 (PQP88_23495) | 54521..55438 | + | 918 | WP_000794249.1 | type-F conjugative transfer system secretin TraK | - |
| PQP88_RS23500 (PQP88_23500) | 55438..56751 | + | 1314 | WP_024131605.1 | TraB/VirB10 family protein | - |
| PQP88_RS23505 (PQP88_23505) | 56748..57326 | + | 579 | WP_000793435.1 | type IV conjugative transfer system lipoprotein TraV | - |
| PQP88_RS23510 (PQP88_23510) | 57330..57722 | + | 393 | WP_000479535.1 | TraA family conjugative transfer protein | - |
| PQP88_RS23515 (PQP88_23515) | 58007..59269 | + | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| PQP88_RS23520 (PQP88_23520) | 59593..60738 | + | 1146 | WP_000976514.1 | Beta-lactamase | ARG |
| PQP88_RS23525 (PQP88_23525) | 60832..61365 | + | 534 | WP_001221666.1 | lipocalin family protein | - |
| PQP88_RS23530 (PQP88_23530) | 61362..61679 | - | 318 | WP_000118520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| PQP88_RS23535 (PQP88_23535) | 62407..64347 | + | 1941 | WP_274877889.1 | DUF4165 domain-containing protein | - |
| PQP88_RS23540 (PQP88_23540) | 64238..64942 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQP88_RS23545 (PQP88_23545) | 65005..65709 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| PQP88_RS23550 (PQP88_23550) | 65919..66908 | - | 990 | WP_001276635.1 | putative signaling protein | VF |
| PQP88_RS23555 (PQP88_23555) | 66905..67141 | - | 237 | WP_001087810.1 | broad-spectrum mercury transporter MerE | - |
| PQP88_RS23560 (PQP88_23560) | 67138..67503 | - | 366 | WP_000995361.1 | mercury resistance co-regulator MerD | - |
| PQP88_RS23565 (PQP88_23565) | 67615..68253 | - | 639 | WP_000761850.1 | organomercurial lyase MerB | - |
| PQP88_RS23570 (PQP88_23570) | 68268..69953 | - | 1686 | WP_000149288.1 | mercury(II) reductase | - |
| PQP88_RS23575 (PQP88_23575) | 70024..70299 | - | 276 | WP_000732290.1 | mercury resistance system periplasmic binding protein MerP | - |
| PQP88_RS23580 (PQP88_23580) | 70315..70665 | - | 351 | WP_001294666.1 | mercuric transport protein MerT | - |
| PQP88_RS23585 (PQP88_23585) | 70737..71171 | + | 435 | WP_000414383.1 | IS607 family transposase ISChh1 | Transposase |
| PQP88_RS23590 (PQP88_23590) | 71271..72275 | + | 1005 | WP_000427623.1 | IS110 family transposase IS4321R | Transposase |
| PQP88_RS23595 (PQP88_23595) | 72552..72671 | + | 120 | Protein_97 | permease | - |
| PQP88_RS23600 (PQP88_23600) | 72681..72797 | + | 117 | WP_000338626.1 | hypothetical protein | - |
| PQP88_RS23605 (PQP88_23605) | 72918..73292 | + | 375 | WP_000868820.1 | hypothetical protein | - |
| PQP88_RS23610 (PQP88_23610) | 73406..74131 | + | 726 | WP_000988731.1 | hypothetical protein | - |
| PQP88_RS23615 (PQP88_23615) | 74372..78517 | + | 4146 | Protein_101 | Putative deoxyribonuclease RhsC | VF |
| PQP88_RS23620 (PQP88_23620) | 78507..78929 | + | 423 | WP_001165345.1 | hypothetical protein | - |
| PQP88_RS23625 (PQP88_23625) | 79100..79551 | + | 452 | Protein_103 | hypothetical protein | - |
| PQP88_RS23630 (PQP88_23630) | 79567..80169 | - | 603 | WP_000278322.1 | hypothetical protein | - |
| PQP88_RS23635 (PQP88_23635) | 80439..80720 | + | 282 | WP_000575657.1 | hypothetical protein | - |
| PQP88_RS23640 (PQP88_23640) | 81019..81555 | + | 537 | WP_000949433.1 | hypothetical protein | - |
| PQP88_RS23645 (PQP88_23645) | 81558..82568 | + | 1011 | WP_000543934.1 | IS91 family transposase ISWz1 | Transposase |
| PQP88_RS23650 (PQP88_23650) | 82573..83442 | + | 870 | WP_000997323.1 | 3'-5' exonuclease | - |
| PQP88_RS23655 (PQP88_23655) | 83439..83930 | + | 492 | WP_000139717.1 | hypothetical protein | - |
| PQP88_RS23660 (PQP88_23660) | 84257..85132 | + | 876 | WP_001097010.1 | DNA replication terminus site-binding protein | - |
| PQP88_RS23665 (PQP88_23665) | 85294..86334 | + | 1041 | WP_000101568.1 | DNA-binding protein | - |
| PQP88_RS23670 (PQP88_23670) | 86621..88132 | + | 1512 | WP_000811656.1 | UvrD-helicase domain-containing protein | - |
| PQP88_RS23675 (PQP88_23675) | 88243..89283 | + | 1041 | WP_001326396.1 | conjugal transfer protein TraF | - |
| PQP88_RS23680 (PQP88_23680) | 89285..90718 | + | 1434 | WP_274890603.1 | conjugal transfer protein TraH | - |
| PQP88_RS23685 (PQP88_23685) | 90731..94345 | + | 3615 | WP_000534551.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| PQP88_RS23690 (PQP88_23690) | 94383..94745 | - | 363 | WP_000683483.1 | hypothetical protein | - |
| PQP88_RS23695 (PQP88_23695) | 95461..95733 | + | 273 | WP_000356489.1 | helix-turn-helix domain-containing protein | - |
| PQP88_RS23700 (PQP88_23700) | 95733..96266 | + | 534 | WP_000790610.1 | transglycosylase SLT domain-containing protein | - |
| PQP88_RS23705 (PQP88_23705) | 96277..96885 | + | 609 | WP_000891157.1 | hypothetical protein | - |
| PQP88_RS23710 (PQP88_23710) | 96882..97433 | + | 552 | WP_001020646.1 | FlhC family transcriptional regulator | - |
| PQP88_RS23715 (PQP88_23715) | 97493..97912 | - | 420 | WP_000651490.1 | H-NS family nucleoid-associated regulatory protein | - |
| PQP88_RS23720 (PQP88_23720) | 97914..98207 | - | 294 | WP_000919078.1 | hypothetical protein | - |
| PQP88_RS23725 (PQP88_23725) | 98224..99207 | - | 984 | WP_000077458.1 | ParM/StbA family protein | - |
| PQP88_RS23730 (PQP88_23730) | 99706..100245 | + | 540 | WP_001447712.1 | conjugative transfer protein MobI(A/C) | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|