MGE detailed information
MGE type: Prophage MGE length: 61362 bp
Accession: NZ_CP117390 Location: 1997537..2058898 Organism: Salmonella enterica subsp. enterica serovar Uganda strain RM008 Replicon: chromosome
Accession: NZ_CP117390 Location: 1997537..2058898 Organism: Salmonella enterica subsp. enterica serovar Uganda strain RM008 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP88_RS09630 () | 1993274..1993726 | + | 453 | WP_000653694.1 | dihydroneopterin triphosphate diphosphatase | - |
| PQP88_RS09635 () | 1993756..1994496 | + | 741 | WP_000907242.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| PQP88_RS09640 () | 1994533..1995054 | + | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| PQP88_RS09645 () | 1995056..1995655 | - | 600 | WP_000716742.1 | YebB family permuted papain-like enzyme | - |
| PQP88_RS09650 () | 1995898..1996556 | + | 659 | Protein_1883 | hypothetical protein | - |
| PQP88_RS09655 () | 1996917..1997528 | + | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| PQP88_RS09660 () | 1997537..1998547 | + | 1011 | WP_000568508.1 | hypothetical protein | VF |
| PQP88_RS09665 () | 1998626..1999411 | - | 786 | WP_000571508.1 | hypothetical protein | VF |
| PQP88_RS09670 () | 1999408..2000163 | - | 756 | WP_000203013.1 | hypothetical protein | VF |
| PQP88_RS09675 () | 2000242..2001186 | + | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| PQP88_RS09680 () | 2001202..2002521 | + | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| PQP88_RS09685 () | 2002638..2003609 | + | 972 | WP_000448401.1 | hypothetical protein | VF |
| PQP88_RS09690 () | 2003682..2005124 | - | 1443 | WP_274890577.1 | pyruvate kinase | - |
| PQP88_RS09695 () | 2005248..2006117 | - | 870 | WP_023194353.1 | MurR/RpiR family transcriptional regulator | - |
| PQP88_RS09700 () | 2006459..2007934 | + | 1476 | WP_000301704.1 | glucose-6-phosphate dehydrogenase | - |
| PQP88_RS09705 () | 2008169..2009980 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| PQP88_RS09710 () | 2010018..2010659 | + | 642 | WP_000800495.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PQP88_RS09715 () | 2010759..2011937 | - | 1179 | WP_000173418.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PQP88_RS09720 () | 2012068..2012358 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PQP88_RS09725 () | 2012426..2012779 | + | 354 | WP_001042123.1 | protein YebF | - |
| PQP88_RS09730 () | 2012873..2013532 | + | 660 | WP_023243913.1 | tellurite resistance TerB family protein | - |
| PQP88_RS09735 () | 2013745..2015796 | + | 2052 | WP_000936990.1 | oligopeptidase B | - |
| PQP88_RS09740 () | 2015831..2016529 | - | 699 | WP_000944279.1 | exodeoxyribonuclease X | - |
| PQP88_RS09745 () | 2016553..2017209 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| PQP88_RS09750 () | 2017317..2017547 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQP88_RS09755 () | 2017685..2018059 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| PQP88_RS09760 () | 2018060..2018935 | + | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| PQP88_RS09765 () | 2018952..2019305 | + | 354 | WP_000722370.1 | YebY family protein | - |
| - | 2019407..2019550 | - | 144 | - | - | Antitoxin Detail |
| - | 2019445..2019548 | + | 104 | - | - | Toxin Detail |
| PQP88_RS09770 () | 2019678..2020519 | - | 842 | Protein_1907 | tyrosine-type recombinase/integrase | - |
| PQP88_RS09775 () | 2020610..2020966 | + | 357 | WP_000003145.1 | hypothetical protein | - |
| PQP88_RS09780 () | 2020920..2021126 | + | 207 | Protein_1909 | phage tail protein | - |
| PQP88_RS09785 () | 2021298..2021453 | + | 156 | Protein_1910 | phage tail protein | - |
| PQP88_RS09790 () | 2021559..2021891 | + | 333 | WP_031609875.1 | DUF1353 domain-containing protein | - |
| PQP88_RS09795 () | 2021940..2022049 | + | 110 | Protein_1912 | tail fiber assembly protein | - |
| PQP88_RS09800 () | 2022140..2022325 | - | 186 | WP_012218702.1 | PagK family vesicle-borne virulence factor | - |
| PQP88_RS09805 () | 2022568..2022765 | - | 198 | Protein_1914 | tail fiber assembly protein | - |
| PQP88_RS09810 () | 2022761..2023531 | - | 771 | WP_001652627.1 | transporter substrate-binding domain-containing protein | - |
| PQP88_RS09815 () | 2024022..2024150 | + | 129 | Protein_1916 | helix-turn-helix domain-containing protein | - |
| PQP88_RS09820 () | 2024179..2024979 | - | 801 | WP_274890578.1 | hypothetical protein | - |
| PQP88_RS09825 () | 2025933..2027012 | - | 1080 | WP_076741596.1 | hypothetical protein ; Integrase | Integrase |
| PQP88_RS09830 () | 2027045..2028196 | - | 1152 | Protein_1919 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| PQP88_RS09835 () | 2028185..2028376 | + | 192 | Protein_1920 | glycoside hydrolase family 19 protein | - |
| PQP88_RS09840 () | 2028430..2028963 | + | 534 | WP_001050883.1 | DUF2514 domain-containing protein | - |
| PQP88_RS09845 () | 2029220..2029387 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| PQP88_RS09850 () | 2029695..2029955 | + | 261 | Protein_1923 | DUF1441 family protein | - |
| PQP88_RS09855 () | 2029957..2030172 | + | 216 | Protein_1924 | shikimate transporter | - |
| PQP88_RS09860 () | 2030170..2030514 | + | 345 | Protein_1925 | macro domain-containing protein | - |
| PQP88_RS09865 () | 2030524..2030994 | + | 471 | Protein_1926 | tail fiber assembly protein | - |
| PQP88_RS09870 () | 2031091..2031291 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| PQP88_RS09875 () | 2031681..2031861 | - | 181 | Protein_1928 | IS3 family transposase | - |
| PQP88_RS09880 () | 2031861..2031986 | + | 126 | WP_001652642.1 | hypothetical protein | - |
| PQP88_RS09885 () | 2032500..2032646 | - | 147 | WP_001520350.1 | hypothetical protein | - |
| PQP88_RS09890 () | 2032640..2032807 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| PQP88_RS09895 () | 2033134..2033748 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| PQP88_RS09900 () | 2033758..2033916 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PQP88_RS09905 () | 2034049..2034963 | - | 915 | WP_001233454.1 | DMT family transporter | - |
| PQP88_RS23735 () | 2036258..2036374 | - | 117 | WP_231919481.1 | integrase | - |
| PQP88_RS09915 () | 2036750..2037945 | + | 1196 | Protein_1936 | IS256 family transposase | - |
| PQP88_RS09920 () | 2038091..2038231 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| PQP88_RS09925 () | 2038397..2038666 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| PQP88_RS09930 () | 2039036..2039455 | + | 420 | WP_000354407.1 | GNAT family N-acetyltransferase | - |
| PQP88_RS09935 () | 2039828..2040304 | - | 477 | WP_079798327.1 | hypothetical protein | - |
| PQP88_RS09940 () | 2040633..2041028 | - | 396 | WP_000422889.1 | DUF1398 domain-containing protein | - |
| PQP88_RS09945 () | 2041712..2042434 | + | 723 | WP_000182072.1 | hypothetical protein | VF |
| PQP88_RS09950 () | 2042719..2042883 | + | 165 | WP_001134857.1 | hypothetical protein | - |
| PQP88_RS09955 () | 2043107..2043757 | + | 651 | WP_000986174.1 | protein-serine/threonine phosphatase | - |
| PQP88_RS09960 () | 2043776..2043967 | - | 192 | WP_000457838.1 | DUF1482 family protein | - |
| PQP88_RS09965 () | 2044078..2044314 | - | 237 | WP_024131167.1 | YebV family protein | - |
| PQP88_RS09970 () | 2044432..2045871 | - | 1440 | WP_024152359.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PQP88_RS09975 () | 2045949..2048582 | - | 2634 | WP_001529852.1 | hypothetical protein | VF |
| PQP88_RS09980 () | 2048551..2049834 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| PQP88_RS09985 () | 2049963..2050460 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| PQP88_RS09990 () | 2050558..2051244 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| PQP88_RS09995 () | 2051264..2053312 | + | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| PQP88_RS10000 () | 2053505..2054386 | + | 882 | WP_000984498.1 | protease HtpX | - |
| PQP88_RS10005 () | 2054434..2055807 | - | 1374 | WP_079798328.1 | MFS transporter | - |
| PQP88_RS10010 () | 2055983..2056774 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| PQP88_RS10015 () | 2056986..2057225 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| PQP88_RS10020 () | 2057383..2057526 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| PQP88_RS10025 () | 2057597..2057884 | + | 288 | WP_001000660.1 | YebO family protein | - |
| PQP88_RS10030 () | 2058533..2058676 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| PQP88_RS10035 () | 2058689..2058898 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| PQP88_RS10040 () | 2059118..2060863 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| PQP88_RS10045 () | 2060929..2061738 | + | 810 | WP_023193489.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| PQP88_RS10050 () | 2061735..2062301 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| PQP88_RS10055 () | 2062711..2063169 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|