MGE detailed information
MGE type: Conjugative plasmid MGE length: 106220 bp
Accession: NZ_CP117374 Location: 1..106220 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM043 Replicon: plasmid pRM043_1
Accession: NZ_CP117374 Location: 1..106220 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM043 Replicon: plasmid pRM043_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ08_RS23815 (PQQ08_23815) | 1..1101 | + | 1101 | WP_274896715.1 | RepB family plasmid replication initiator protein | - |
| PQQ08_RS23820 (PQQ08_23820) | 2138..2572 | - | 435 | WP_000883925.1 | hypothetical protein | - |
| PQQ08_RS23825 (PQQ08_23825) | 2590..3705 | - | 1116 | WP_000946102.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| PQQ08_RS23830 (PQQ08_23830) | 3974..4582 | + | 609 | WP_000849071.1 | hypothetical protein | - |
| PQQ08_RS23835 (PQQ08_23835) | 4587..5108 | + | 522 | WP_000393785.1 | hypothetical protein | - |
| PQQ08_RS23840 (PQQ08_23840) | 5111..5632 | + | 522 | WP_000805800.1 | hypothetical protein | - |
| PQQ08_RS23845 (PQQ08_23845) | 5729..6202 | + | 474 | WP_000057877.1 | hypothetical protein | - |
| PQQ08_RS23850 (PQQ08_23850) | 6213..6506 | + | 294 | WP_001370730.1 | hypothetical protein | - |
| PQQ08_RS23855 (PQQ08_23855) | 6511..7365 | + | 855 | WP_000539392.1 | hypothetical protein | - |
| PQQ08_RS23860 (PQQ08_23860) | 7365..8324 | + | 960 | WP_000829616.1 | S49 family peptidase | - |
| PQQ08_RS23865 (PQQ08_23865) | 8340..9200 | + | 861 | WP_000139698.1 | DsbA family protein | - |
| PQQ08_RS23870 (PQQ08_23870) | 9234..9662 | + | 429 | WP_000591074.1 | hypothetical protein | - |
| PQQ08_RS23875 (PQQ08_23875) | 9719..10078 | + | 360 | WP_000422768.1 | hypothetical protein | - |
| PQQ08_RS23880 (PQQ08_23880) | 10078..10524 | + | 447 | WP_000919345.1 | Fe3+-siderophore ABC transporter permease | - |
| PQQ08_RS23885 (PQQ08_23885) | 10521..11039 | + | 519 | WP_000210756.1 | nitrite reductase | - |
| PQQ08_RS23890 (PQQ08_23890) | 11039..11269 | + | 231 | WP_000972663.1 | hypothetical protein | - |
| PQQ08_RS23895 (PQQ08_23895) | 11256..12113 | + | 858 | WP_001167032.1 | hypothetical protein | - |
| PQQ08_RS23900 (PQQ08_23900) | 12344..12871 | + | 528 | WP_001236377.1 | thermonuclease family protein | - |
| PQQ08_RS23905 (PQQ08_23905) | 12929..13201 | + | 273 | WP_001043047.1 | HU family DNA-binding protein | - |
| PQQ08_RS23910 (PQQ08_23910) | 13289..13582 | + | 294 | WP_001239997.1 | chromosome segregation protein ParM | - |
| PQQ08_RS23915 (PQQ08_23915) | 13609..13911 | - | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin Detail |
| PQQ08_RS23920 (PQQ08_23920) | 13916..14266 | - | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PQQ08_RS23925 (PQQ08_23925) | 14429..14977 | + | 549 | WP_001061574.1 | transcriptional regulator | - |
| PQQ08_RS23930 (PQQ08_23930) | 15318..15512 | + | 195 | WP_000343597.1 | hypothetical protein | - |
| PQQ08_RS23935 (PQQ08_23935) | 15523..15894 | + | 372 | WP_000516916.1 | hypothetical protein | - |
| PQQ08_RS23940 (PQQ08_23940) | 15887..16357 | + | 471 | WP_001281821.1 | hypothetical protein | - |
| PQQ08_RS23945 (PQQ08_23945) | 16372..16707 | - | 336 | WP_000683476.1 | hypothetical protein | - |
| PQQ08_RS23950 (PQQ08_23950) | 16804..17292 | + | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
| PQQ08_RS23955 (PQQ08_23955) | 17295..17792 | + | 498 | WP_000062185.1 | hypothetical protein | - |
| PQQ08_RS23960 (PQQ08_23960) | 18007..18711 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQQ08_RS23965 (PQQ08_23965) | 18776..18955 | - | 180 | Protein_31 | helix-turn-helix domain-containing protein | - |
| PQQ08_RS23970 (PQQ08_23970) | 19262..19966 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQQ08_RS23975 (PQQ08_23975) | 20020..20292 | - | 273 | Protein_33 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| PQQ08_RS23980 (PQQ08_23980) | 20305..21738 | - | 1434 | WP_000256129.1 | conjugal transfer protein TraH | - |
| PQQ08_RS23985 (PQQ08_23985) | 21740..22780 | - | 1041 | WP_001326396.1 | conjugal transfer protein TraF | - |
| PQQ08_RS23990 (PQQ08_23990) | 22891..24402 | - | 1512 | WP_000811656.1 | UvrD-helicase domain-containing protein | - |
| PQQ08_RS23995 (PQQ08_23995) | 24689..25729 | - | 1041 | WP_000101568.1 | DNA-binding protein | - |
| PQQ08_RS24000 (PQQ08_24000) | 25883..26758 | - | 876 | WP_001097010.1 | DNA replication terminus site-binding protein | - |
| PQQ08_RS24005 (PQQ08_24005) | 27085..27576 | - | 492 | WP_000139717.1 | hypothetical protein | - |
| PQQ08_RS24010 (PQQ08_24010) | 27573..28442 | - | 870 | WP_012728230.1 | 3'-5' exonuclease | - |
| PQQ08_RS24015 (PQQ08_24015) | 28447..29457 | - | 1011 | WP_000543934.1 | IS91 family transposase ISWz1 | Transposase |
| PQQ08_RS24020 (PQQ08_24020) | 29460..29996 | - | 537 | WP_000949433.1 | hypothetical protein | - |
| PQQ08_RS24025 (PQQ08_24025) | 30295..30576 | - | 282 | WP_000575657.1 | hypothetical protein | - |
| PQQ08_RS24030 (PQQ08_24030) | 30846..31448 | + | 603 | WP_000278322.1 | hypothetical protein | - |
| PQQ08_RS24035 (PQQ08_24035) | 31464..31916 | - | 453 | Protein_45 | hypothetical protein | - |
| PQQ08_RS24040 (PQQ08_24040) | 32087..32509 | - | 423 | WP_001165345.1 | hypothetical protein | - |
| PQQ08_RS24045 (PQQ08_24045) | 32499..36644 | - | 4146 | WP_274896716.1 | RHS repeat-associated core domain-containing protein | - |
| PQQ08_RS24050 (PQQ08_24050) | 36885..37610 | - | 726 | WP_000988731.1 | hypothetical protein | - |
| PQQ08_RS24055 (PQQ08_24055) | 37724..38098 | - | 375 | WP_000868820.1 | hypothetical protein | - |
| PQQ08_RS24060 (PQQ08_24060) | 38219..38335 | - | 117 | WP_000338626.1 | hypothetical protein | - |
| PQQ08_RS24065 (PQQ08_24065) | 38345..38464 | - | 120 | Protein_51 | permease | - |
| PQQ08_RS24070 (PQQ08_24070) | 38741..39745 | - | 1005 | WP_000427623.1 | IS110 family transposase IS4321R | Transposase |
| PQQ08_RS24075 (PQQ08_24075) | 39845..40279 | - | 435 | WP_000414383.1 | IS607 family transposase ISChh1 | Transposase |
| PQQ08_RS24080 (PQQ08_24080) | 40351..40701 | + | 351 | WP_001294666.1 | mercuric transport protein MerT | - |
| PQQ08_RS24085 (PQQ08_24085) | 40717..40992 | + | 276 | WP_000732290.1 | mercury resistance system periplasmic binding protein MerP | - |
| PQQ08_RS24090 (PQQ08_24090) | 41064..42749 | + | 1686 | WP_000149288.1 | mercury(II) reductase | - |
| PQQ08_RS24095 (PQQ08_24095) | 42764..43402 | + | 639 | WP_000761850.1 | organomercurial lyase MerB | - |
| PQQ08_RS24100 (PQQ08_24100) | 43514..43879 | + | 366 | WP_000995361.1 | mercury resistance co-regulator MerD | - |
| PQQ08_RS24105 (PQQ08_24105) | 43876..44112 | + | 237 | WP_001087810.1 | broad-spectrum mercury transporter MerE | - |
| PQQ08_RS24110 (PQQ08_24110) | 44109..45098 | + | 990 | WP_001276635.1 | putative signaling protein | VF |
| PQQ08_RS24115 (PQQ08_24115) | 45308..46012 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| PQQ08_RS24120 (PQQ08_24120) | 46052..46888 | + | 837 | WP_012728227.1 | Beta-lactamase TEM | ARG |
| PQQ08_RS24125 (PQQ08_24125) | 47049..47546 | + | 498 | Protein_63 | mercuric reductase | - |
| PQQ08_RS24130 (PQQ08_24130) | 47564..47926 | + | 363 | WP_001277456.1 | mercury resistance co-regulator MerD | - |
| PQQ08_RS24135 (PQQ08_24135) | 47923..48159 | + | 237 | WP_000993386.1 | broad-spectrum mercury transporter MerE | - |
| PQQ08_RS24140 (PQQ08_24140) | 48195..48863 | + | 669 | WP_001300294.1 | putative signaling protein | VF |
| PQQ08_RS24145 (PQQ08_24145) | 48938..50188 | + | 1251 | Protein_67 | transposase | - |
| PQQ08_RS24150 (PQQ08_24150) | 50253..50957 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQQ08_RS24155 (PQQ08_24155) | 50848..53820 | - | 2973 | WP_225870293.1 | Ig-like domain-containing protein | - |
| PQQ08_RS24160 (PQQ08_24160) | 54548..54865 | + | 318 | WP_000118520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| PQQ08_RS24165 (PQQ08_24165) | 54862..55395 | - | 534 | WP_001221666.1 | lipocalin family protein | - |
| PQQ08_RS24170 (PQQ08_24170) | 55489..56634 | - | 1146 | WP_274896668.1 | Beta-lactamase | ARG |
| PQQ08_RS24175 (PQQ08_24175) | 56958..58220 | - | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| PQQ08_RS24180 (PQQ08_24180) | 58505..58897 | - | 393 | WP_000479535.1 | TraA family conjugative transfer protein | - |
| PQQ08_RS24185 (PQQ08_24185) | 58901..59479 | - | 579 | WP_000793435.1 | type IV conjugative transfer system lipoprotein TraV | - |
| PQQ08_RS24190 (PQQ08_24190) | 59476..60789 | - | 1314 | WP_024131605.1 | TraB/VirB10 family protein | - |
| PQQ08_RS24195 (PQQ08_24195) | 60789..61706 | - | 918 | WP_000794249.1 | type-F conjugative transfer system secretin TraK | - |
| PQQ08_RS24200 (PQQ08_24200) | 61690..62316 | - | 627 | WP_001049717.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| PQQ08_RS24205 (PQQ08_24205) | 62313..62594 | - | 282 | WP_000805625.1 | type IV conjugative transfer system protein TraL | - |
| PQQ08_RS24210 (PQQ08_24210) | 62739..63104 | - | 366 | WP_001052530.1 | hypothetical protein | - |
| PQQ08_RS24215 (PQQ08_24215) | 63440..64102 | - | 663 | WP_001231464.1 | hypothetical protein | - |
| PQQ08_RS24220 (PQQ08_24220) | 64102..64479 | - | 378 | WP_000869297.1 | hypothetical protein | - |
| PQQ08_RS24225 (PQQ08_24225) | 64489..64935 | - | 447 | WP_000122507.1 | hypothetical protein | - |
| PQQ08_RS24230 (PQQ08_24230) | 64945..65574 | - | 630 | WP_000743449.1 | DUF4400 domain-containing protein | - |
| PQQ08_RS24235 (PQQ08_24235) | 65531..66076 | - | 546 | WP_000228720.1 | hypothetical protein | - |
| PQQ08_RS24240 (PQQ08_24240) | 66126..67991 | - | 1866 | WP_077779971.1 | conjugative transfer system coupling protein TraD | - |
| PQQ08_RS24245 (PQQ08_24245) | 67988..70960 | - | 2973 | WP_001326173.1 | hypothetical protein | Relaxase |
| PQQ08_RS24250 (PQQ08_24250) | 71128..71745 | + | 618 | WP_001249395.1 | hypothetical protein | - |
| PQQ08_RS24255 (PQQ08_24255) | 71727..71960 | + | 234 | WP_001191890.1 | hypothetical protein | - |
| PQQ08_RS24260 (PQQ08_24260) | 71960..74152 | + | 2193 | WP_000366823.1 | DNA topoisomerase 3 | - |
| PQQ08_RS24265 (PQQ08_24265) | 74167..74655 | + | 489 | WP_000467110.1 | hypothetical protein | - |
| PQQ08_RS24270 (PQQ08_24270) | 74746..75024 | - | 279 | WP_000746034.1 | hypothetical protein | - |
| PQQ08_RS24275 (PQQ08_24275) | 75257..75874 | - | 618 | WP_000464630.1 | hypothetical protein | - |
| PQQ08_RS24280 (PQQ08_24280) | 75930..76586 | - | 657 | WP_000268552.1 | hypothetical protein | - |
| PQQ08_RS24285 (PQQ08_24285) | 76586..78013 | - | 1428 | WP_000936897.1 | DNA cytosine methyltransferase | - |
| PQQ08_RS24290 (PQQ08_24290) | 78017..78517 | - | 501 | WP_000647188.1 | hypothetical protein | - |
| PQQ08_RS24295 (PQQ08_24295) | 78526..78837 | - | 312 | WP_001447539.1 | hypothetical protein | - |
| PQQ08_RS24300 (PQQ08_24300) | 78843..79349 | - | 507 | WP_000566443.1 | hypothetical protein | - |
| PQQ08_RS24305 (PQQ08_24305) | 79342..80016 | - | 675 | WP_000344149.1 | hypothetical protein | - |
| PQQ08_RS24310 (PQQ08_24310) | 79991..80272 | - | 282 | WP_000044823.1 | hypothetical protein | - |
| PQQ08_RS24315 (PQQ08_24315) | 80265..80642 | - | 378 | WP_001125904.1 | hypothetical protein | - |
| PQQ08_RS24320 (PQQ08_24320) | 80969..81112 | + | 144 | WP_000939033.1 | hypothetical protein | - |
| PQQ08_RS24325 (PQQ08_24325) | 81204..81839 | + | 636 | WP_000074431.1 | N-6 DNA methylase | - |
| PQQ08_RS24330 (PQQ08_24330) | 81892..82164 | - | 273 | WP_000703827.1 | helix-turn-helix domain-containing protein | - |
| PQQ08_RS24335 (PQQ08_24335) | 82213..83394 | - | 1182 | WP_001207227.1 | KorB domain-containing protein | - |
| PQQ08_RS24340 (PQQ08_24340) | 83398..84183 | - | 786 | WP_274896713.1 | Sporulation initiation inhibitor protein Soj | VF |
| PQQ08_RS24345 (PQQ08_24345) | 84357..84668 | - | 312 | WP_000338945.1 | hypothetical protein | - |
| PQQ08_RS24350 (PQQ08_24350) | 84975..85790 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| PQQ08_RS24355 (PQQ08_24355) | 85851..86654 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| PQQ08_RS24360 (PQQ08_24360) | 86654..87490 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| PQQ08_RS24365 (PQQ08_24365) | 87796..88038 | + | 243 | WP_000844627.1 | transposase | - |
| PQQ08_RS24370 (PQQ08_24370) | 88070..88720 | - | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| PQQ08_RS24375 (PQQ08_24375) | 88826..90025 | + | 1200 | WP_274896714.1 | Tetracycline resistance protein, class C | ARG |
| PQQ08_RS24380 (PQQ08_24380) | 89992..90180 | - | 189 | Protein_114 | IS91 family transposase | - |
| PQQ08_RS24385 (PQQ08_24385) | 90292..90597 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| PQQ08_RS24390 (PQQ08_24390) | 90625..91839 | - | 1215 | WP_012728216.1 | Bicyclomycin resistance protein | ARG |
| PQQ08_RS24395 (PQQ08_24395) | 92056..92940 | - | 885 | WP_012728215.1 | DUF3363 domain-containing protein | - |
| PQQ08_RS24400 (PQQ08_24400) | 92971..94464 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| PQQ08_RS24405 (PQQ08_24405) | 94675..94899 | - | 225 | WP_000743213.1 | hypothetical protein | - |
| PQQ08_RS24410 (PQQ08_24410) | 94896..95633 | - | 738 | WP_001366550.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PQQ08_RS24415 (PQQ08_24415) | 96119..96259 | - | 141 | WP_001044210.1 | hypothetical protein | - |
| PQQ08_RS24420 (PQQ08_24420) | 96265..96969 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQQ08_RS24425 (PQQ08_24425) | 97030..100044 | + | 3015 | Protein_123 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| PQQ08_RS24430 (PQQ08_24430) | 100082..100444 | - | 363 | WP_000683483.1 | hypothetical protein | - |
| PQQ08_RS24435 (PQQ08_24435) | 101160..101432 | + | 273 | WP_000356489.1 | helix-turn-helix domain-containing protein | - |
| PQQ08_RS24440 (PQQ08_24440) | 101432..101965 | + | 534 | WP_000790610.1 | transglycosylase SLT domain-containing protein | - |
| PQQ08_RS24445 (PQQ08_24445) | 101976..102584 | + | 609 | WP_000891157.1 | hypothetical protein | - |
| PQQ08_RS24450 (PQQ08_24450) | 102581..103132 | + | 552 | WP_001020646.1 | FlhC family transcriptional regulator | - |
| PQQ08_RS24455 (PQQ08_24455) | 103192..103611 | - | 420 | WP_000651490.1 | H-NS family nucleoid-associated regulatory protein | - |
| PQQ08_RS24460 (PQQ08_24460) | 103613..103906 | - | 294 | WP_000919078.1 | hypothetical protein | - |
| PQQ08_RS24465 (PQQ08_24465) | 103923..104906 | - | 984 | WP_000077458.1 | ParM/StbA family protein | - |
| PQQ08_RS24470 (PQQ08_24470) | 105405..105944 | + | 540 | WP_001447712.1 | conjugative transfer protein MobI(A/C) | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|