MGE detailed information
MGE type: Conjugative plasmid MGE length: 84245 bp
Accession: NZ_CP117363 Location: 1..84245 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM092 Replicon: plasmid pRM092_1
Accession: NZ_CP117363 Location: 1..84245 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM092 Replicon: plasmid pRM092_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ00_RS23745 (PQQ00_23745) | 1..1101 | + | 1101 | WP_000350011.1 | RepB family plasmid replication initiator protein | - |
| PQQ00_RS23750 (PQQ00_23750) | 2138..2572 | - | 435 | WP_000883925.1 | hypothetical protein | - |
| PQQ00_RS23755 (PQQ00_23755) | 2590..3705 | - | 1116 | WP_000946102.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| PQQ00_RS23760 (PQQ00_23760) | 3974..4582 | + | 609 | WP_000849071.1 | hypothetical protein | - |
| PQQ00_RS23765 (PQQ00_23765) | 4587..5108 | + | 522 | WP_000393785.1 | hypothetical protein | - |
| PQQ00_RS23770 (PQQ00_23770) | 5111..5632 | + | 522 | WP_000805800.1 | hypothetical protein | - |
| PQQ00_RS23775 (PQQ00_23775) | 5729..6202 | + | 474 | WP_000057877.1 | hypothetical protein | - |
| PQQ00_RS23780 (PQQ00_23780) | 6213..6506 | + | 294 | WP_001370730.1 | hypothetical protein | - |
| PQQ00_RS23785 (PQQ00_23785) | 6511..7365 | + | 855 | WP_000539392.1 | hypothetical protein | - |
| PQQ00_RS23790 (PQQ00_23790) | 7365..8324 | + | 960 | WP_000829616.1 | S49 family peptidase | - |
| PQQ00_RS23795 (PQQ00_23795) | 8340..9200 | + | 861 | WP_000139698.1 | DsbA family protein | - |
| PQQ00_RS23800 (PQQ00_23800) | 9234..9662 | + | 429 | WP_000591074.1 | hypothetical protein | - |
| PQQ00_RS23805 (PQQ00_23805) | 9719..10078 | + | 360 | WP_000422768.1 | hypothetical protein | - |
| PQQ00_RS23810 (PQQ00_23810) | 10078..10524 | + | 447 | WP_000919345.1 | Fe3+-siderophore ABC transporter permease | - |
| PQQ00_RS23815 (PQQ00_23815) | 10521..11039 | + | 519 | WP_000210756.1 | nitrite reductase | - |
| PQQ00_RS23820 (PQQ00_23820) | 11039..11269 | + | 231 | WP_000972663.1 | hypothetical protein | - |
| PQQ00_RS23825 (PQQ00_23825) | 11256..12113 | + | 858 | WP_001167032.1 | hypothetical protein | - |
| PQQ00_RS23830 (PQQ00_23830) | 12344..12871 | + | 528 | WP_001236377.1 | thermonuclease family protein | - |
| PQQ00_RS23835 (PQQ00_23835) | 12929..13201 | + | 273 | WP_001043047.1 | HU family DNA-binding protein | - |
| PQQ00_RS23840 (PQQ00_23840) | 13289..13582 | + | 294 | WP_001239997.1 | chromosome segregation protein ParM | - |
| PQQ00_RS23845 (PQQ00_23845) | 13609..13911 | - | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin Detail |
| PQQ00_RS23850 (PQQ00_23850) | 13916..14266 | - | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PQQ00_RS23855 (PQQ00_23855) | 14429..14977 | + | 549 | WP_001061574.1 | transcriptional regulator | - |
| PQQ00_RS23860 (PQQ00_23860) | 15318..15512 | + | 195 | WP_000343597.1 | hypothetical protein | - |
| PQQ00_RS23865 (PQQ00_23865) | 15523..15894 | + | 372 | WP_000516916.1 | hypothetical protein | - |
| PQQ00_RS23870 (PQQ00_23870) | 15887..16357 | + | 471 | WP_001281821.1 | hypothetical protein | - |
| PQQ00_RS23875 (PQQ00_23875) | 16372..16707 | - | 336 | WP_000683476.1 | hypothetical protein | - |
| PQQ00_RS23880 (PQQ00_23880) | 16804..17292 | + | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
| PQQ00_RS23885 (PQQ00_23885) | 17295..17792 | + | 498 | WP_000062185.1 | hypothetical protein | - |
| PQQ00_RS23890 (PQQ00_23890) | 18007..18711 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQQ00_RS23895 (PQQ00_23895) | 18776..18955 | - | 180 | Protein_31 | helix-turn-helix domain-containing protein | - |
| PQQ00_RS23900 (PQQ00_23900) | 19262..19966 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQQ00_RS23905 (PQQ00_23905) | 20156..20971 | - | 816 | WP_000018329.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| PQQ00_RS23910 (PQQ00_23910) | 21124..21828 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQQ00_RS23915 (PQQ00_23915) | 21774..22355 | - | 582 | WP_058663077.1 | lipocalin family protein | - |
| PQQ00_RS23920 (PQQ00_23920) | 22449..23594 | - | 1146 | WP_000976514.1 | Beta-lactamase | ARG |
| PQQ00_RS23925 (PQQ00_23925) | 23918..25180 | - | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| PQQ00_RS23930 (PQQ00_23930) | 25465..25857 | - | 393 | WP_000479535.1 | TraA family conjugative transfer protein | - |
| PQQ00_RS23935 (PQQ00_23935) | 25861..26439 | - | 579 | WP_000793435.1 | type IV conjugative transfer system lipoprotein TraV | - |
| PQQ00_RS23940 (PQQ00_23940) | 26436..27749 | - | 1314 | WP_024131605.1 | TraB/VirB10 family protein | - |
| PQQ00_RS23945 (PQQ00_23945) | 27749..28666 | - | 918 | WP_000794249.1 | type-F conjugative transfer system secretin TraK | - |
| PQQ00_RS23950 (PQQ00_23950) | 28650..29276 | - | 627 | WP_001049717.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| PQQ00_RS23955 (PQQ00_23955) | 29273..29554 | - | 282 | WP_000805625.1 | type IV conjugative transfer system protein TraL | - |
| PQQ00_RS23960 (PQQ00_23960) | 29699..30064 | - | 366 | WP_001052530.1 | hypothetical protein | - |
| PQQ00_RS23965 (PQQ00_23965) | 30400..31062 | - | 663 | WP_001231464.1 | hypothetical protein | - |
| PQQ00_RS23970 (PQQ00_23970) | 31062..31439 | - | 378 | WP_000869297.1 | hypothetical protein | - |
| PQQ00_RS23975 (PQQ00_23975) | 31449..31895 | - | 447 | WP_000122507.1 | hypothetical protein | - |
| PQQ00_RS23980 (PQQ00_23980) | 31905..32534 | - | 630 | WP_000743449.1 | DUF4400 domain-containing protein | - |
| PQQ00_RS23985 (PQQ00_23985) | 32491..33036 | - | 546 | WP_000228720.1 | hypothetical protein | - |
| PQQ00_RS23990 (PQQ00_23990) | 33086..34951 | - | 1866 | WP_077779971.1 | conjugative transfer system coupling protein TraD | - |
| PQQ00_RS23995 (PQQ00_23995) | 34948..37920 | - | 2973 | WP_001326173.1 | hypothetical protein | Relaxase |
| PQQ00_RS24000 (PQQ00_24000) | 38088..38705 | + | 618 | WP_001249395.1 | hypothetical protein | - |
| PQQ00_RS24005 (PQQ00_24005) | 38687..38920 | + | 234 | WP_001191890.1 | hypothetical protein | - |
| PQQ00_RS24010 (PQQ00_24010) | 38920..41112 | + | 2193 | WP_000366823.1 | DNA topoisomerase 3 | - |
| PQQ00_RS24015 (PQQ00_24015) | 41127..41615 | + | 489 | WP_000467110.1 | hypothetical protein | - |
| PQQ00_RS24020 (PQQ00_24020) | 41706..41984 | - | 279 | WP_000746034.1 | hypothetical protein | - |
| PQQ00_RS24025 (PQQ00_24025) | 42217..42834 | - | 618 | WP_000464630.1 | hypothetical protein | - |
| PQQ00_RS24030 (PQQ00_24030) | 42890..43546 | - | 657 | WP_000268552.1 | hypothetical protein | - |
| PQQ00_RS24035 (PQQ00_24035) | 43546..44973 | - | 1428 | WP_000936897.1 | DNA cytosine methyltransferase | - |
| PQQ00_RS24040 (PQQ00_24040) | 44977..45477 | - | 501 | WP_000647188.1 | hypothetical protein | - |
| PQQ00_RS24045 (PQQ00_24045) | 45486..45797 | - | 312 | WP_001447539.1 | hypothetical protein | - |
| PQQ00_RS24050 (PQQ00_24050) | 45803..46309 | - | 507 | WP_000566443.1 | hypothetical protein | - |
| PQQ00_RS24055 (PQQ00_24055) | 46302..46976 | - | 675 | WP_000344149.1 | hypothetical protein | - |
| PQQ00_RS24060 (PQQ00_24060) | 46951..47232 | - | 282 | WP_000044823.1 | hypothetical protein | - |
| PQQ00_RS24065 (PQQ00_24065) | 47225..47602 | - | 378 | WP_001125904.1 | hypothetical protein | - |
| PQQ00_RS24070 (PQQ00_24070) | 47929..48072 | + | 144 | WP_000939033.1 | hypothetical protein | - |
| PQQ00_RS24075 (PQQ00_24075) | 48164..48799 | + | 636 | WP_000074431.1 | N-6 DNA methylase | - |
| PQQ00_RS24080 (PQQ00_24080) | 48852..49124 | - | 273 | WP_000703827.1 | helix-turn-helix domain-containing protein | - |
| PQQ00_RS24085 (PQQ00_24085) | 49173..50354 | - | 1182 | WP_001207227.1 | KorB domain-containing protein | - |
| PQQ00_RS24090 (PQQ00_24090) | 50358..51143 | - | 786 | WP_001151304.1 | Sporulation initiation inhibitor protein Soj | VF |
| PQQ00_RS24095 (PQQ00_24095) | 51317..51628 | - | 312 | WP_000338945.1 | hypothetical protein | - |
| PQQ00_RS24100 (PQQ00_24100) | 51935..52750 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| PQQ00_RS24105 (PQQ00_24105) | 52811..53614 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| PQQ00_RS24110 (PQQ00_24110) | 53614..54450 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| PQQ00_RS24115 (PQQ00_24115) | 54756..54997 | + | 242 | Protein_75 | relaxase | - |
| PQQ00_RS24120 (PQQ00_24120) | 55029..55679 | - | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| PQQ00_RS24125 (PQQ00_24125) | 55785..56984 | + | 1200 | WP_000804063.1 | Tetracycline resistance protein, class C | ARG |
| PQQ00_RS24130 (PQQ00_24130) | 56951..57139 | - | 189 | Protein_78 | IS91 family transposase | - |
| PQQ00_RS24135 (PQQ00_24135) | 57251..57556 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| PQQ00_RS24140 (PQQ00_24140) | 57584..58798 | - | 1215 | WP_012728216.1 | Bicyclomycin resistance protein | ARG |
| PQQ00_RS24145 (PQQ00_24145) | 59015..59899 | - | 885 | WP_012728215.1 | DUF3363 domain-containing protein | - |
| PQQ00_RS24150 (PQQ00_24150) | 59930..61423 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| PQQ00_RS24155 (PQQ00_24155) | 61634..61858 | - | 225 | WP_000743213.1 | hypothetical protein | - |
| PQQ00_RS24160 (PQQ00_24160) | 61855..62592 | - | 738 | WP_001366550.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PQQ00_RS24165 (PQQ00_24165) | 62826..63530 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQQ00_RS24170 (PQQ00_24170) | 63596..63901 | - | 306 | Protein_86 | hypothetical protein | - |
| PQQ00_RS24175 (PQQ00_24175) | 64171..64452 | + | 282 | WP_000575657.1 | hypothetical protein | - |
| PQQ00_RS24180 (PQQ00_24180) | 64751..65287 | + | 537 | WP_000949433.1 | hypothetical protein | - |
| PQQ00_RS24185 (PQQ00_24185) | 65290..66300 | + | 1011 | WP_000543934.1 | IS91 family transposase ISWz1 | Transposase |
| PQQ00_RS24190 (PQQ00_24190) | 66305..67174 | + | 870 | WP_012728230.1 | 3'-5' exonuclease | - |
| PQQ00_RS24195 (PQQ00_24195) | 67171..67662 | + | 492 | WP_000139717.1 | hypothetical protein | - |
| PQQ00_RS24200 (PQQ00_24200) | 67989..68864 | + | 876 | WP_001097010.1 | DNA replication terminus site-binding protein | - |
| PQQ00_RS24205 (PQQ00_24205) | 69018..70058 | + | 1041 | WP_000101568.1 | DNA-binding protein | - |
| PQQ00_RS24210 (PQQ00_24210) | 70345..71856 | + | 1512 | WP_000811656.1 | UvrD-helicase domain-containing protein | - |
| PQQ00_RS24215 (PQQ00_24215) | 71967..73007 | + | 1041 | WP_001326396.1 | conjugal transfer protein TraF | - |
| PQQ00_RS24220 (PQQ00_24220) | 73009..74442 | + | 1434 | WP_000256129.1 | conjugal transfer protein TraH | - |
| PQQ00_RS24225 (PQQ00_24225) | 74455..78069 | + | 3615 | WP_000534551.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| PQQ00_RS24230 (PQQ00_24230) | 78107..78469 | - | 363 | WP_000683483.1 | hypothetical protein | - |
| PQQ00_RS24235 (PQQ00_24235) | 79185..79457 | + | 273 | WP_000356489.1 | helix-turn-helix domain-containing protein | - |
| PQQ00_RS24240 (PQQ00_24240) | 79457..79990 | + | 534 | WP_000790610.1 | transglycosylase SLT domain-containing protein | - |
| PQQ00_RS24245 (PQQ00_24245) | 80001..80609 | + | 609 | WP_000891157.1 | hypothetical protein | - |
| PQQ00_RS24250 (PQQ00_24250) | 80606..81157 | + | 552 | WP_001020646.1 | FlhC family transcriptional regulator | - |
| PQQ00_RS24255 (PQQ00_24255) | 81217..81636 | - | 420 | WP_000651490.1 | H-NS family nucleoid-associated regulatory protein | - |
| PQQ00_RS24260 (PQQ00_24260) | 81638..81931 | - | 294 | WP_000919078.1 | hypothetical protein | - |
| PQQ00_RS24265 (PQQ00_24265) | 81948..82931 | - | 984 | WP_000077458.1 | ParM/StbA family protein | - |
| PQQ00_RS24270 (PQQ00_24270) | 83430..83969 | + | 540 | WP_001447712.1 | conjugative transfer protein MobI(A/C) | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|