MGE detailed information
MGE type: Prophage MGE length: 102900 bp
Accession: NZ_CP117362 Location: 2645114..2748013 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM092 Replicon: chromosome
Accession: NZ_CP117362 Location: 2645114..2748013 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM092 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ00_RS13000 () | 2640843..2641301 | + | 459 | WP_000156283.1 | DUF986 family protein | - |
| PQQ00_RS13005 () | 2641711..2642277 | + | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| PQQ00_RS13010 () | 2642274..2643083 | - | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| PQQ00_RS13015 () | 2643149..2644894 | - | 1746 | WP_000730323.1 | peptidoglycan glycosyltransferase FtsI | - |
| PQQ00_RS13020 () | 2645114..2645323 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| PQQ00_RS13025 () | 2645336..2645479 | - | 144 | WP_001675517.1 | DUF2627 domain-containing protein | - |
| PQQ00_RS13030 () | 2646128..2646415 | - | 288 | WP_001000659.1 | YebO family protein | - |
| PQQ00_RS13035 () | 2646486..2646629 | - | 144 | WP_000847421.1 | PhoP/PhoQ regulator MgrB | - |
| PQQ00_RS13040 () | 2646787..2647026 | + | 240 | WP_001236777.1 | invasion protein YobH | - |
| PQQ00_RS13045 () | 2647238..2648029 | - | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| PQQ00_RS13050 () | 2648205..2649578 | + | 1374 | WP_000416139.1 | MFS transporter | - |
| PQQ00_RS13055 () | 2649626..2650507 | - | 882 | WP_000984498.1 | protease HtpX | - |
| PQQ00_RS13060 () | 2650700..2652748 | - | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| PQQ00_RS13065 () | 2652768..2653454 | - | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| PQQ00_RS13070 () | 2653552..2654049 | - | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| PQQ00_RS13075 () | 2654178..2655461 | + | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| PQQ00_RS13080 () | 2655430..2658063 | + | 2634 | WP_001752430.1 | hypothetical protein | VF |
| PQQ00_RS13085 () | 2658141..2659580 | + | 1440 | WP_001531515.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PQQ00_RS13090 () | 2659698..2659934 | + | 237 | WP_024131108.1 | YebV family protein | - |
| PQQ00_RS13095 () | 2660045..2660236 | + | 192 | WP_000457838.1 | DUF1482 family protein | - |
| PQQ00_RS13100 () | 2660255..2660905 | - | 651 | WP_000986173.1 | protein-serine/threonine phosphatase | - |
| PQQ00_RS13105 () | 2661129..2661293 | - | 165 | WP_001134856.1 | membrane protein | - |
| PQQ00_RS13110 () | 2661578..2662300 | - | 723 | WP_000182072.1 | hypothetical protein | VF |
| PQQ00_RS13115 () | 2662984..2663325 | + | 342 | WP_001752424.1 | DUF1398 family protein | - |
| PQQ00_RS13120 () | 2663707..2664183 | + | 477 | WP_000030946.1 | hypothetical protein | - |
| PQQ00_RS13125 () | 2664556..2664975 | - | 420 | WP_000354407.1 | GNAT family N-acetyltransferase | - |
| PQQ00_RS13130 () | 2665345..2665614 | + | 270 | WP_001752421.1 | hypothetical protein | - |
| PQQ00_RS13135 () | 2665780..2665920 | + | 141 | WP_001617922.1 | hypothetical protein | - |
| PQQ00_RS13140 () | 2666066..2667260 | - | 1195 | Protein_2570 | IS256 family transposase IS285 | Transposase |
| PQQ00_RS24755 () | 2667636..2667752 | + | 117 | WP_231919481.1 | integrase | - |
| PQQ00_RS13150 () | 2669048..2669963 | + | 916 | Protein_2572 | DMT family transporter | - |
| PQQ00_RS13155 () | 2670096..2670254 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PQQ00_RS13160 () | 2670264..2670878 | + | 615 | WP_000848073.1 | disulfide bond formation protein B | - |
| PQQ00_RS13165 () | 2671205..2671372 | - | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| PQQ00_RS13170 () | 2672026..2672151 | - | 126 | WP_001574229.1 | hypothetical protein | - |
| PQQ00_RS13175 () | 2672151..2672330 | + | 180 | Protein_2577 | IS3 family transposase | - |
| PQQ00_RS13180 () | 2672719..2672919 | + | 201 | WP_001751604.1 | PagK family vesicle-borne virulence factor | - |
| PQQ00_RS13185 () | 2673016..2673491 | - | 476 | Protein_2579 | tail fiber assembly protein | - |
| PQQ00_RS13190 () | 2673508..2673843 | - | 336 | Protein_2580 | macro domain-containing protein | - |
| PQQ00_RS13195 () | 2674058..2674323 | - | 266 | Protein_2581 | DUF1441 family protein | - |
| PQQ00_RS13200 () | 2674378..2674569 | + | 192 | WP_001034751.1 | hypothetical protein | - |
| PQQ00_RS13205 () | 2674634..2674801 | + | 168 | WP_000789530.1 | lytic enzyme | - |
| PQQ00_RS13210 () | 2675058..2675591 | - | 534 | WP_000055326.1 | DUF2514 domain-containing protein | - |
| PQQ00_RS13215 () | 2675588..2675836 | - | 249 | Protein_2585 | glycoside hydrolase family 19 protein | - |
| PQQ00_RS13220 () | 2675984..2676979 | + | 996 | Protein_2586 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| PQQ00_RS13225 () | 2677009..2678088 | + | 1080 | WP_000087644.1 | hypothetical protein ; Integrase | Integrase |
| PQQ00_RS13230 () | 2679042..2679842 | + | 801 | WP_001536069.1 | hypothetical protein | - |
| PQQ00_RS13235 () | 2679871..2680112 | - | 242 | Protein_2589 | recombinase family protein | - |
| PQQ00_RS13240 () | 2680322..2681044 | + | 723 | WP_000161701.1 | hypothetical protein | VF |
| PQQ00_RS13245 () | 2681246..2681815 | - | 570 | WP_000143180.1 | tail fiber assembly protein | - |
| PQQ00_RS13250 () | 2681815..2684232 | - | 2418 | WP_001574223.1 | prophage tail fiber N-terminal domain-containing protein | - |
| PQQ00_RS13255 () | 2684286..2684522 | - | 237 | WP_223229643.1 | hypothetical protein | - |
| PQQ00_RS13260 () | 2684567..2685430 | - | 864 | WP_072100756.1 | DUF1983 domain-containing protein | - |
| PQQ00_RS13265 () | 2685470..2687919 | - | 2450 | Protein_2595 | host specificity protein J | - |
| PQQ00_RS13270 () | 2687991..2688695 | - | 705 | WP_001576012.1 | tail assembly protein | - |
| PQQ00_RS13275 () | 2688599..2689330 | - | 732 | WP_000606352.1 | C40 family peptidase | - |
| PQQ00_RS13280 () | 2689340..2690035 | - | 696 | WP_001152416.1 | phage minor tail protein L | - |
| PQQ00_RS13285 () | 2690125..2690658 | + | 534 | WP_000877926.1 | hypothetical protein | VF |
| PQQ00_RS13290 () | 2690775..2691272 | - | 498 | WP_000725268.1 | hypothetical protein | VF |
| PQQ00_RS13295 () | 2691371..2691703 | - | 333 | WP_000978295.1 | phage tail protein | - |
| PQQ00_RS13300 () | 2691700..2694687 | - | 2988 | WP_077906652.1 | phage tail tape measure protein | - |
| PQQ00_RS13305 () | 2694767..2695096 | - | 330 | WP_010989009.1 | phage tail assembly protein T | - |
| PQQ00_RS13310 () | 2695093..2695491 | - | 399 | WP_000478858.1 | phage minor tail protein G | - |
| PQQ00_RS13315 () | 2695537..2696286 | - | 750 | WP_000132757.1 | phage tail protein | - |
| PQQ00_RS13320 () | 2696298..2696699 | - | 402 | WP_000196703.1 | phage minor tail U family protein | - |
| PQQ00_RS13325 () | 2696696..2697262 | - | 567 | WP_000453192.1 | phage tail protein | - |
| PQQ00_RS13330 () | 2697243..2697542 | - | 300 | WP_000774239.1 | ATP-binding protein | - |
| PQQ00_RS13335 () | 2697535..2697858 | - | 324 | WP_001107908.1 | DUF2190 family protein | - |
| PQQ00_RS13340 () | 2697949..2700029 | - | 2081 | Protein_2610 | Clp protease ClpP | - |
| PQQ00_RS13345 () | 2699953..2701500 | - | 1548 | WP_001009211.1 | phage portal protein | - |
| PQQ00_RS13350 () | 2701497..2701703 | - | 207 | WP_000196190.1 | hypothetical protein | - |
| PQQ00_RS13355 () | 2701700..2703838 | - | 2139 | WP_000989241.1 | phage terminase large subunit family protein | - |
| PQQ00_RS13360 () | 2703795..2704328 | - | 534 | WP_024139201.1 | DUF1441 family protein | - |
| PQQ00_RS13365 () | 2704536..2705015 | - | 480 | WP_001541990.1 | lysis protein | - |
| PQQ00_RS13370 () | 2705033..2705485 | - | 453 | WP_000984586.1 | glycoside hydrolase family protein | - |
| PQQ00_RS13375 () | 2705469..2705798 | - | 330 | WP_001574216.1 | phage holin, lambda family | - |
| PQQ00_RS13380 () | 2706074..2706760 | + | 687 | WP_001574215.1 | type III secretion system effector protease GtgA | - |
| PQQ00_RS13385 () | 2707121..2707570 | + | 450 | WP_000798708.1 | hypothetical protein | - |
| PQQ00_RS13390 () | 2707944..2708471 | - | 528 | WP_000971762.1 | hypothetical protein | - |
| PQQ00_RS13395 () | 2708565..2709254 | - | 690 | WP_001097218.1 | bacteriophage antitermination protein Q | - |
| PQQ00_RS13400 () | 2709251..2709387 | - | 137 | Protein_2622 | YlcG family protein | - |
| PQQ00_RS13405 () | 2709384..2709524 | - | 141 | Protein_2623 | recombination protein NinG | - |
| PQQ00_RS13410 () | 2709608..2710207 | - | 600 | WP_000940753.1 | DUF1367 family protein | - |
| PQQ00_RS13415 () | 2710271..2710489 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| PQQ00_RS13420 () | 2710791..2710889 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| PQQ00_RS13425 () | 2711208..2713187 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| PQQ00_RS13430 () | 2713584..2714714 | + | 1131 | WP_000529512.1 | GGDEF domain-containing protein | - |
| PQQ00_RS13435 () | 2715001..2715396 | - | 396 | WP_000089417.1 | DUF977 family protein | - |
| PQQ00_RS13440 () | 2715409..2715951 | - | 543 | WP_158000546.1 | replication protein P | - |
| PQQ00_RS13445 () | 2715863..2716861 | - | 999 | WP_000729536.1 | DUF1376 domain-containing protein | - |
| PQQ00_RS13450 () | 2716908..2717402 | - | 495 | WP_001574210.1 | toxin YdaT family protein | - |
| PQQ00_RS13455 () | 2717389..2717643 | - | 255 | WP_001033912.1 | helix-turn-helix transcriptional regulator | - |
| PQQ00_RS13460 () | 2717742..2718140 | + | 399 | WP_001574209.1 | helix-turn-helix domain-containing protein | - |
| PQQ00_RS13465 () | 2718582..2718896 | - | 315 | WP_071591195.1 | hypothetical protein | - |
| PQQ00_RS13470 () | 2719158..2719433 | + | 276 | WP_000103933.1 | hypothetical protein | - |
| PQQ00_RS13475 () | 2719437..2719643 | + | 207 | WP_000682660.1 | cell division inhibitor protein | - |
| PQQ00_RS13480 () | 2719719..2720054 | + | 336 | WP_000799627.1 | hypothetical protein | - |
| PQQ00_RS13485 () | 2720195..2722885 | + | 2691 | WP_000023732.1 | exodeoxyribonuclease VIII | - |
| PQQ00_RS13490 () | 2722878..2723708 | + | 831 | WP_024139186.1 | recombination protein RecT | - |
| PQQ00_RS13495 () | 2723755..2723940 | + | 186 | WP_000280163.1 | DUF1187 family protein | - |
| PQQ00_RS13500 () | 2724039..2724467 | + | 429 | WP_000743301.1 | hypothetical protein | - |
| PQQ00_RS13505 () | 2724528..2724806 | + | 279 | WP_001675651.1 | excisionase | - |
| PQQ00_RS13510 () | 2724781..2725860 | + | 1080 | WP_000087638.1 | hypothetical protein ; Integrase | Integrase |
| - | 2725998..2726143 | + | 146 | - | - | Antitoxin Detail |
| - | 2726000..2726103 | - | 104 | - | - | Toxin Detail |
| PQQ00_RS13515 () | 2726243..2726596 | - | 354 | WP_000722368.1 | YebY family protein | - |
| PQQ00_RS13520 () | 2726613..2727488 | - | 876 | WP_000979703.1 | copper homeostasis membrane protein CopD | - |
| PQQ00_RS13525 () | 2727489..2727863 | - | 375 | WP_001751617.1 | CopC domain-containing protein YobA | - |
| PQQ00_RS13530 () | 2728001..2728231 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQQ00_RS13535 () | 2728339..2728995 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| PQQ00_RS13540 () | 2729019..2729717 | + | 699 | WP_000944287.1 | exodeoxyribonuclease X | - |
| PQQ00_RS13545 () | 2729754..2731805 | - | 2052 | WP_000936999.1 | oligopeptidase B | - |
| PQQ00_RS13550 () | 2732018..2732677 | - | 660 | WP_000024709.1 | tellurite resistance TerB family protein | - |
| PQQ00_RS13555 () | 2732771..2733124 | - | 354 | WP_001042123.1 | protein YebF | - |
| PQQ00_RS13560 () | 2733192..2733482 | - | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PQQ00_RS13565 () | 2733613..2734791 | + | 1179 | WP_000173430.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PQQ00_RS13570 () | 2734891..2735532 | - | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PQQ00_RS13575 () | 2735570..2737381 | - | 1812 | WP_001069124.1 | phosphogluconate dehydratase | - |
| PQQ00_RS13580 () | 2737616..2739091 | - | 1476 | WP_000301704.1 | glucose-6-phosphate dehydrogenase | - |
| PQQ00_RS13585 () | 2739433..2740302 | + | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| PQQ00_RS13590 () | 2740426..2741868 | + | 1443 | WP_000091156.1 | pyruvate kinase | - |
| PQQ00_RS13595 () | 2741941..2742912 | - | 972 | WP_000448401.1 | hypothetical protein | VF |
| PQQ00_RS13600 () | 2743029..2744348 | - | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| PQQ00_RS13605 () | 2744364..2745308 | - | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| PQQ00_RS13610 () | 2745387..2746142 | + | 756 | WP_000203013.1 | hypothetical protein | VF |
| PQQ00_RS13615 () | 2746139..2746924 | + | 786 | WP_000571508.1 | hypothetical protein | VF |
| PQQ00_RS13620 () | 2747003..2748013 | - | 1011 | WP_000568508.1 | hypothetical protein | VF |
| PQQ00_RS13625 () | 2748022..2748633 | - | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| PQQ00_RS13630 () | 2748993..2749685 | - | 693 | WP_001675835.1 | hypothetical protein | - |
| PQQ00_RS13635 () | 2749894..2750490 | + | 597 | WP_000716751.1 | YebB family permuted papain-like enzyme | - |
| PQQ00_RS13640 () | 2750590..2752086 | - | 1497 | WP_000974701.1 | substrate-binding domain-containing protein | - |
| PQQ00_RS13645 () | 2752117..2752638 | - | 522 | WP_000022510.1 | crossover junction endodeoxyribonuclease RuvC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|