MGE detailed information
MGE type: Prophage MGE length: 89976 bp
Accession: NZ_CP117359 Location: 2657689..2747664 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM094 Replicon: chromosome
Accession: NZ_CP117359 Location: 2657689..2747664 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM094 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP87_RS13075 () | 2653202..2653699 | - | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| PQP87_RS13080 () | 2653828..2655111 | + | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| PQP87_RS13085 () | 2655080..2657713 | + | 2634 | WP_001752430.1 | PqiB family protein | - |
| PQP87_RS13090 () | 2657791..2659230 | + | 1440 | WP_001531515.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PQP87_RS13095 () | 2659348..2659584 | + | 237 | WP_024131108.1 | YebV family protein | - |
| PQP87_RS13100 () | 2659695..2659886 | + | 192 | WP_000457838.1 | DUF1482 family protein | - |
| PQP87_RS13105 () | 2659905..2660555 | - | 651 | WP_000986173.1 | protein-serine/threonine phosphatase | - |
| PQP87_RS13110 () | 2660779..2660943 | - | 165 | WP_001134856.1 | membrane protein | - |
| PQP87_RS13115 () | 2661228..2661950 | - | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| PQP87_RS13120 () | 2662634..2662975 | + | 342 | WP_001752424.1 | DUF1398 family protein | - |
| PQP87_RS13125 () | 2663357..2663833 | + | 477 | WP_000030946.1 | hypothetical protein | - |
| PQP87_RS13130 () | 2664206..2664625 | - | 420 | WP_000354407.1 | GNAT family N-acetyltransferase | - |
| PQP87_RS13135 () | 2664995..2665264 | + | 270 | WP_001752421.1 | hypothetical protein | - |
| PQP87_RS13140 () | 2665430..2665570 | + | 141 | WP_001617922.1 | hypothetical protein | - |
| PQP87_RS13145 () | 2665716..2666910 | - | 1195 | Protein_2571 | IS256 family transposase IS285 | Transposase |
| PQP87_RS24860 () | 2667286..2667402 | + | 117 | WP_231919481.1 | integrase | - |
| PQP87_RS13155 () | 2668698..2669613 | + | 916 | Protein_2573 | DMT family transporter | - |
| PQP87_RS13160 () | 2669746..2669904 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PQP87_RS13165 () | 2669914..2670528 | + | 615 | WP_000848073.1 | disulfide bond formation protein B | - |
| PQP87_RS13170 () | 2670855..2671022 | - | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| PQP87_RS13175 () | 2671676..2671801 | - | 126 | WP_001574229.1 | hypothetical protein | - |
| PQP87_RS13180 () | 2671801..2671980 | + | 180 | Protein_2578 | IS3 family transposase | - |
| PQP87_RS13185 () | 2672369..2672569 | + | 201 | WP_001751604.1 | PagK family vesicle-borne virulence factor | - |
| PQP87_RS13190 () | 2672666..2673141 | - | 476 | Protein_2580 | tail fiber assembly protein | - |
| PQP87_RS13195 () | 2673158..2673493 | - | 336 | Protein_2581 | macro domain-containing protein | - |
| PQP87_RS13200 () | 2673708..2673973 | - | 266 | Protein_2582 | DUF1441 family protein | - |
| PQP87_RS13205 () | 2674028..2674219 | + | 192 | WP_001034751.1 | hypothetical protein | - |
| PQP87_RS13210 () | 2674284..2674451 | + | 168 | WP_000789530.1 | lytic enzyme | - |
| PQP87_RS13215 () | 2674708..2675241 | - | 534 | WP_000055326.1 | DUF2514 domain-containing protein | - |
| PQP87_RS13220 () | 2675238..2675486 | - | 249 | Protein_2586 | glycoside hydrolase family 19 protein | - |
| PQP87_RS13225 () | 2675634..2676629 | + | 996 | Protein_2587 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| PQP87_RS13230 () | 2676659..2677738 | + | 1080 | WP_000087644.1 | hypothetical protein ; Integrase | Integrase |
| PQP87_RS13235 () | 2678692..2679492 | + | 801 | WP_001536069.1 | hypothetical protein | - |
| PQP87_RS13240 () | 2679521..2679762 | - | 242 | Protein_2590 | recombinase family protein | - |
| PQP87_RS13245 () | 2679972..2680694 | + | 723 | WP_000161701.1 | Guanine nucleotide exchange factor SopE | VF |
| PQP87_RS13250 () | 2680896..2681465 | - | 570 | WP_000143180.1 | tail fiber assembly protein | - |
| PQP87_RS13255 () | 2681465..2683882 | - | 2418 | WP_001574223.1 | prophage tail fiber N-terminal domain-containing protein | - |
| PQP87_RS13260 () | 2683936..2684172 | - | 237 | WP_223229643.1 | hypothetical protein | - |
| PQP87_RS13265 () | 2684217..2685080 | - | 864 | WP_072100756.1 | DUF1983 domain-containing protein | - |
| PQP87_RS13270 () | 2685120..2687569 | - | 2450 | Protein_2596 | host specificity protein J | - |
| PQP87_RS13275 () | 2687641..2688345 | - | 705 | WP_001576012.1 | tail assembly protein | - |
| PQP87_RS13280 () | 2688249..2688980 | - | 732 | WP_000606352.1 | C40 family peptidase | - |
| PQP87_RS13285 () | 2688990..2689685 | - | 696 | WP_001152416.1 | phage minor tail protein L | - |
| PQP87_RS13290 () | 2689775..2690308 | + | 534 | WP_000877926.1 | Superoxide dismutase [Cu-Zn] 1 | VF |
| PQP87_RS13295 () | 2690425..2690922 | - | 498 | WP_000725268.1 | Attachment invasion locus protein | VF |
| PQP87_RS13300 () | 2691021..2691353 | - | 333 | WP_000978295.1 | phage tail protein | - |
| PQP87_RS13305 () | 2691350..2694337 | - | 2988 | WP_077906652.1 | phage tail tape measure protein | - |
| PQP87_RS13310 () | 2694417..2694746 | - | 330 | WP_010989009.1 | phage tail assembly protein T | - |
| PQP87_RS13315 () | 2694743..2695141 | - | 399 | WP_000478858.1 | phage minor tail protein G | - |
| PQP87_RS13320 () | 2695187..2695936 | - | 750 | WP_000132757.1 | phage tail protein | - |
| PQP87_RS13325 () | 2695948..2696349 | - | 402 | WP_000196703.1 | phage minor tail U family protein | - |
| PQP87_RS13330 () | 2696346..2696912 | - | 567 | WP_000453192.1 | phage tail protein | - |
| PQP87_RS13335 () | 2696893..2697192 | - | 300 | WP_000774239.1 | ATP-binding protein | - |
| PQP87_RS13340 () | 2697185..2697508 | - | 324 | WP_001107908.1 | DUF2190 family protein | - |
| PQP87_RS13345 () | 2697599..2699680 | - | 2082 | WP_010989008.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| PQP87_RS13350 () | 2699604..2701151 | - | 1548 | WP_001009211.1 | phage portal protein | - |
| PQP87_RS13355 () | 2701148..2701354 | - | 207 | WP_000196190.1 | hypothetical protein | - |
| PQP87_RS13360 () | 2701351..2703489 | - | 2139 | WP_274883207.1 | phage terminase large subunit family protein | - |
| PQP87_RS13365 () | 2703446..2703979 | - | 534 | WP_024139201.1 | DUF1441 family protein | - |
| PQP87_RS13370 () | 2704187..2704666 | - | 480 | WP_001541990.1 | lysis protein | - |
| PQP87_RS13375 () | 2704684..2705136 | - | 453 | WP_000984586.1 | glycoside hydrolase family protein | - |
| PQP87_RS13380 () | 2705120..2705449 | - | 330 | WP_001574216.1 | phage holin, lambda family | - |
| PQP87_RS13385 () | 2705725..2706411 | + | 687 | WP_001574215.1 | type III secretion system effector protease GtgA | - |
| PQP87_RS13390 () | 2706772..2707221 | + | 450 | WP_000798708.1 | hypothetical protein | - |
| PQP87_RS13395 () | 2707595..2708122 | - | 528 | WP_000971762.1 | hypothetical protein | - |
| PQP87_RS13400 () | 2708216..2708905 | - | 690 | WP_001097218.1 | bacteriophage antitermination protein Q | - |
| PQP87_RS13405 () | 2708902..2709038 | - | 137 | Protein_2623 | YlcG family protein | - |
| PQP87_RS13410 () | 2709035..2709175 | - | 141 | Protein_2624 | recombination protein NinG | - |
| PQP87_RS13415 () | 2709259..2709858 | - | 600 | WP_000940753.1 | DUF1367 family protein | - |
| PQP87_RS13420 () | 2709922..2710140 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| PQP87_RS13425 () | 2710442..2710540 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| PQP87_RS13430 () | 2710859..2712838 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| PQP87_RS13435 () | 2713235..2714365 | + | 1131 | WP_000529512.1 | GGDEF domain-containing protein | - |
| PQP87_RS13440 () | 2714652..2715047 | - | 396 | WP_000089417.1 | DUF977 family protein | - |
| PQP87_RS13445 () | 2715060..2715602 | - | 543 | WP_158000546.1 | replication protein P | - |
| PQP87_RS13450 () | 2715514..2716512 | - | 999 | WP_000729536.1 | DUF1376 domain-containing protein | - |
| PQP87_RS13455 () | 2716559..2717053 | - | 495 | WP_001574210.1 | toxin YdaT family protein | - |
| PQP87_RS13460 () | 2717040..2717294 | - | 255 | WP_001033912.1 | helix-turn-helix transcriptional regulator | - |
| PQP87_RS13465 () | 2717393..2717791 | + | 399 | WP_001574209.1 | helix-turn-helix domain-containing protein | - |
| PQP87_RS13470 () | 2718233..2718547 | - | 315 | WP_071591195.1 | hypothetical protein | - |
| PQP87_RS13475 () | 2718809..2719084 | + | 276 | WP_000103933.1 | hypothetical protein | - |
| PQP87_RS13480 () | 2719088..2719294 | + | 207 | WP_000682660.1 | cell division inhibitor protein | - |
| PQP87_RS13485 () | 2719370..2719705 | + | 336 | WP_000799627.1 | hypothetical protein | - |
| PQP87_RS13490 () | 2719846..2722536 | + | 2691 | WP_274883175.1 | exodeoxyribonuclease VIII | - |
| PQP87_RS13495 () | 2722529..2723359 | + | 831 | WP_024139186.1 | recombination protein RecT | - |
| PQP87_RS13500 () | 2723406..2723591 | + | 186 | WP_000280163.1 | DUF1187 family protein | - |
| PQP87_RS13505 () | 2723690..2724118 | + | 429 | WP_000743301.1 | hypothetical protein | - |
| PQP87_RS13510 () | 2724179..2724457 | + | 279 | WP_001675651.1 | excisionase | - |
| PQP87_RS13515 () | 2724432..2725511 | + | 1080 | WP_000087638.1 | hypothetical protein ; Integrase | Integrase |
| - | 2725649..2725794 | + | 146 | - | - | Antitoxin Detail |
| - | 2725651..2725754 | - | 104 | - | - | Toxin Detail |
| PQP87_RS13520 () | 2725894..2726247 | - | 354 | WP_000722368.1 | YebY family protein | - |
| PQP87_RS13525 () | 2726264..2727139 | - | 876 | WP_000979703.1 | copper homeostasis membrane protein CopD | - |
| PQP87_RS13530 () | 2727140..2727514 | - | 375 | WP_001751617.1 | CopC domain-containing protein YobA | - |
| PQP87_RS13535 () | 2727652..2727882 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQP87_RS13540 () | 2727990..2728646 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| PQP87_RS13545 () | 2728670..2729368 | + | 699 | WP_000944287.1 | exodeoxyribonuclease X | - |
| PQP87_RS13550 () | 2729405..2731456 | - | 2052 | WP_000936999.1 | oligopeptidase B | - |
| PQP87_RS13555 () | 2731669..2732328 | - | 660 | WP_000024709.1 | tellurite resistance TerB family protein | - |
| PQP87_RS13560 () | 2732422..2732775 | - | 354 | WP_001042123.1 | protein YebF | - |
| PQP87_RS13565 () | 2732843..2733133 | - | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PQP87_RS13570 () | 2733264..2734442 | + | 1179 | WP_000173430.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PQP87_RS13575 () | 2734542..2735183 | - | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PQP87_RS13580 () | 2735221..2737032 | - | 1812 | WP_001069124.1 | phosphogluconate dehydratase | - |
| PQP87_RS13585 () | 2737267..2738742 | - | 1476 | WP_000301704.1 | glucose-6-phosphate dehydrogenase | - |
| PQP87_RS13590 () | 2739084..2739953 | + | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| PQP87_RS13595 () | 2740077..2741519 | + | 1443 | WP_000091156.1 | pyruvate kinase | - |
| PQP87_RS13600 () | 2741592..2742563 | - | 972 | WP_000448401.1 | Lipid A biosynthesis myristoyltransferase | VF |
| PQP87_RS13605 () | 2742680..2743999 | - | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| PQP87_RS13610 () | 2744015..2744959 | - | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| PQP87_RS13615 () | 2745038..2745793 | + | 756 | WP_000203013.1 | Zinc import ATP-binding protein ZnuC | VF |
| PQP87_RS13620 () | 2745790..2746575 | + | 786 | WP_000571508.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| PQP87_RS13625 () | 2746654..2747664 | - | 1011 | WP_000568508.1 | Holliday junction ATP-dependent DNA helicase RuvB | VF |
| PQP87_RS13630 () | 2747673..2748284 | - | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| PQP87_RS13635 () | 2748644..2749336 | - | 693 | WP_001675835.1 | hypothetical protein | - |
| PQP87_RS13640 () | 2749545..2750141 | + | 597 | WP_000716751.1 | YebB family permuted papain-like enzyme | - |
| PQP87_RS13645 () | 2750241..2751737 | - | 1497 | WP_000974701.1 | substrate-binding domain-containing protein | - |
| PQP87_RS13650 () | 2751768..2752289 | - | 522 | WP_000022510.1 | crossover junction endodeoxyribonuclease RuvC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|