MGE detailed information
MGE type: Conjugative plasmid MGE length: 82559 bp
Accession: NZ_CP117355 Location: 1..82559 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM099 Replicon: plasmid pRM099_1
Accession: NZ_CP117355 Location: 1..82559 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM099 Replicon: plasmid pRM099_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP84_RS23740 (PQP84_23740) | 1..1101 | + | 1101 | WP_000350011.1 | RepB family plasmid replication initiator protein | - |
| PQP84_RS23745 (PQP84_23745) | 2138..2572 | - | 435 | WP_000883925.1 | hypothetical protein | - |
| PQP84_RS23750 (PQP84_23750) | 2590..3705 | - | 1116 | WP_000946102.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| PQP84_RS23755 (PQP84_23755) | 3974..4582 | + | 609 | WP_000849071.1 | hypothetical protein | - |
| PQP84_RS23760 (PQP84_23760) | 4587..5108 | + | 522 | WP_000393785.1 | hypothetical protein | - |
| PQP84_RS23765 (PQP84_23765) | 5111..5632 | + | 522 | WP_000805800.1 | hypothetical protein | - |
| PQP84_RS23770 (PQP84_23770) | 5729..6202 | + | 474 | WP_000057877.1 | hypothetical protein | - |
| PQP84_RS23775 (PQP84_23775) | 6213..6506 | + | 294 | WP_001370730.1 | hypothetical protein | - |
| PQP84_RS23780 (PQP84_23780) | 6511..7365 | + | 855 | WP_274891765.1 | hypothetical protein | - |
| PQP84_RS23785 (PQP84_23785) | 7365..8324 | + | 960 | WP_000829616.1 | S49 family peptidase | - |
| PQP84_RS23790 (PQP84_23790) | 8340..9200 | + | 861 | WP_000139698.1 | DsbA family protein | - |
| PQP84_RS23795 (PQP84_23795) | 9234..9662 | + | 429 | WP_000591074.1 | hypothetical protein | - |
| PQP84_RS23800 (PQP84_23800) | 9719..10078 | + | 360 | WP_000422768.1 | hypothetical protein | - |
| PQP84_RS23805 (PQP84_23805) | 10078..10524 | + | 447 | WP_000919345.1 | Fe3+-siderophore ABC transporter permease | - |
| PQP84_RS23810 (PQP84_23810) | 10521..11039 | + | 519 | WP_000210756.1 | nitrite reductase | - |
| PQP84_RS23815 (PQP84_23815) | 11039..11269 | + | 231 | WP_000972663.1 | hypothetical protein | - |
| PQP84_RS23820 (PQP84_23820) | 11256..12113 | + | 858 | WP_001167032.1 | hypothetical protein | - |
| PQP84_RS23825 (PQP84_23825) | 12344..12871 | + | 528 | WP_001236377.1 | thermonuclease family protein | - |
| PQP84_RS23830 (PQP84_23830) | 12929..13201 | + | 273 | WP_001043047.1 | HU family DNA-binding protein | - |
| PQP84_RS23835 (PQP84_23835) | 13289..13582 | + | 294 | WP_001239997.1 | chromosome segregation protein ParM | - |
| PQP84_RS23840 (PQP84_23840) | 13609..13911 | - | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin Detail |
| PQP84_RS23845 (PQP84_23845) | 13916..14266 | - | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PQP84_RS23850 (PQP84_23850) | 14429..14977 | + | 549 | WP_001061574.1 | transcriptional regulator | - |
| PQP84_RS23855 (PQP84_23855) | 15318..15512 | + | 195 | WP_000343597.1 | hypothetical protein | - |
| PQP84_RS23860 (PQP84_23860) | 15523..15894 | + | 372 | WP_000516916.1 | hypothetical protein | - |
| PQP84_RS23865 (PQP84_23865) | 15887..16357 | + | 471 | WP_001281821.1 | hypothetical protein | - |
| PQP84_RS23870 (PQP84_23870) | 16372..16707 | - | 336 | WP_000683476.1 | hypothetical protein | - |
| PQP84_RS23875 (PQP84_23875) | 16804..17292 | + | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
| PQP84_RS23880 (PQP84_23880) | 17295..17792 | + | 498 | WP_000062185.1 | hypothetical protein | - |
| PQP84_RS23885 (PQP84_23885) | 18007..18711 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQP84_RS23890 (PQP84_23890) | 18776..18955 | - | 180 | Protein_31 | helix-turn-helix domain-containing protein | - |
| PQP84_RS23895 (PQP84_23895) | 19262..19966 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQP84_RS23900 (PQP84_23900) | 20378..21115 | + | 738 | WP_001366550.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PQP84_RS23905 (PQP84_23905) | 21112..21336 | + | 225 | WP_000743213.1 | hypothetical protein | - |
| PQP84_RS23910 (PQP84_23910) | 21547..23040 | + | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| PQP84_RS23915 (PQP84_23915) | 23071..23955 | + | 885 | WP_012728215.1 | DUF3363 domain-containing protein | - |
| PQP84_RS23920 (PQP84_23920) | 24172..25386 | + | 1215 | WP_012728216.1 | Bicyclomycin resistance protein | ARG |
| PQP84_RS23925 (PQP84_23925) | 25414..25719 | + | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| PQP84_RS23930 (PQP84_23930) | 25831..26019 | + | 189 | Protein_39 | IS91 family transposase | - |
| PQP84_RS23935 (PQP84_23935) | 25986..27184 | - | 1199 | Protein_40 | tetracycline efflux MFS transporter Tet(A) | - |
| PQP84_RS23940 (PQP84_23940) | 27290..27940 | + | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| PQP84_RS23945 (PQP84_23945) | 27972..28214 | - | 243 | WP_000844627.1 | transposase | - |
| PQP84_RS23950 (PQP84_23950) | 28520..29356 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
| PQP84_RS23955 (PQP84_23955) | 29356..30159 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| PQP84_RS23960 (PQP84_23960) | 30220..31035 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| PQP84_RS23965 (PQP84_23965) | 31342..31653 | + | 312 | WP_000338945.1 | hypothetical protein | - |
| PQP84_RS23970 (PQP84_23970) | 31827..32612 | + | 786 | WP_001151304.1 | Sporulation initiation inhibitor protein Soj | VF |
| PQP84_RS23975 (PQP84_23975) | 32616..33797 | + | 1182 | WP_001207227.1 | KorB domain-containing protein | - |
| PQP84_RS23980 (PQP84_23980) | 33846..34118 | + | 273 | WP_000703827.1 | helix-turn-helix domain-containing protein | - |
| PQP84_RS23985 (PQP84_23985) | 34171..34806 | - | 636 | WP_000074431.1 | N-6 DNA methylase | - |
| PQP84_RS23990 (PQP84_23990) | 34898..35041 | - | 144 | WP_000939033.1 | hypothetical protein | - |
| PQP84_RS23995 (PQP84_23995) | 35368..35745 | + | 378 | WP_001125904.1 | hypothetical protein | - |
| PQP84_RS24000 (PQP84_24000) | 35738..36019 | + | 282 | WP_000044823.1 | hypothetical protein | - |
| PQP84_RS24005 (PQP84_24005) | 35994..36668 | + | 675 | WP_000344149.1 | hypothetical protein | - |
| PQP84_RS24010 (PQP84_24010) | 36661..37143 | + | 483 | WP_274891766.1 | hypothetical protein | - |
| PQP84_RS24015 (PQP84_24015) | 37171..37482 | + | 312 | WP_001447539.1 | hypothetical protein | - |
| PQP84_RS24020 (PQP84_24020) | 37491..37991 | + | 501 | WP_000647188.1 | hypothetical protein | - |
| PQP84_RS24025 (PQP84_24025) | 37995..39422 | + | 1428 | WP_000936897.1 | DNA cytosine methyltransferase | - |
| PQP84_RS24030 (PQP84_24030) | 39422..40078 | + | 657 | WP_000268552.1 | hypothetical protein | - |
| PQP84_RS24035 (PQP84_24035) | 40134..40751 | + | 618 | WP_000464630.1 | hypothetical protein | - |
| PQP84_RS24040 (PQP84_24040) | 40984..41262 | + | 279 | WP_000746034.1 | hypothetical protein | - |
| PQP84_RS24045 (PQP84_24045) | 41353..41841 | - | 489 | WP_000467110.1 | hypothetical protein | - |
| PQP84_RS24050 (PQP84_24050) | 41856..44048 | - | 2193 | WP_000366823.1 | DNA topoisomerase 3 | - |
| PQP84_RS24055 (PQP84_24055) | 44048..44281 | - | 234 | WP_001191890.1 | hypothetical protein | - |
| PQP84_RS24060 (PQP84_24060) | 44263..44880 | - | 618 | WP_001249395.1 | hypothetical protein | - |
| PQP84_RS24065 (PQP84_24065) | 45048..48020 | + | 2973 | WP_001326173.1 | hypothetical protein | Relaxase |
| PQP84_RS24070 (PQP84_24070) | 48017..49882 | + | 1866 | WP_077779971.1 | conjugative transfer system coupling protein TraD | - |
| PQP84_RS24075 (PQP84_24075) | 49932..50477 | + | 546 | WP_000228720.1 | hypothetical protein | - |
| PQP84_RS24080 (PQP84_24080) | 50434..51063 | + | 630 | WP_000743449.1 | DUF4400 domain-containing protein | - |
| PQP84_RS24085 (PQP84_24085) | 51073..51519 | + | 447 | WP_000122507.1 | hypothetical protein | - |
| PQP84_RS24090 (PQP84_24090) | 51529..51906 | + | 378 | WP_000869297.1 | hypothetical protein | - |
| PQP84_RS24095 (PQP84_24095) | 51906..52568 | + | 663 | WP_001231464.1 | hypothetical protein | - |
| PQP84_RS24100 (PQP84_24100) | 52904..53269 | + | 366 | WP_001052530.1 | hypothetical protein | - |
| PQP84_RS24105 (PQP84_24105) | 53414..53695 | + | 282 | WP_000805625.1 | type IV conjugative transfer system protein TraL | - |
| PQP84_RS24110 (PQP84_24110) | 53692..54318 | + | 627 | WP_001049717.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| PQP84_RS24115 (PQP84_24115) | 54302..55219 | + | 918 | WP_000794249.1 | type-F conjugative transfer system secretin TraK | - |
| PQP84_RS24120 (PQP84_24120) | 55219..56532 | + | 1314 | WP_024131605.1 | TraB/VirB10 family protein | - |
| PQP84_RS24125 (PQP84_24125) | 56529..57107 | + | 579 | WP_000793435.1 | type IV conjugative transfer system lipoprotein TraV | - |
| PQP84_RS24130 (PQP84_24130) | 57111..57503 | + | 393 | WP_000479535.1 | TraA family conjugative transfer protein | - |
| PQP84_RS24135 (PQP84_24135) | 57788..59050 | + | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| PQP84_RS24140 (PQP84_24140) | 59374..60519 | + | 1146 | WP_000976514.1 | Beta-lactamase | ARG |
| PQP84_RS24145 (PQP84_24145) | 60613..61194 | + | 582 | WP_058663077.1 | lipocalin family protein | - |
| PQP84_RS24150 (PQP84_24150) | 61140..61844 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQP84_RS24155 (PQP84_24155) | 61910..62215 | - | 306 | Protein_84 | hypothetical protein | - |
| PQP84_RS24160 (PQP84_24160) | 62485..62766 | + | 282 | WP_000575657.1 | hypothetical protein | - |
| PQP84_RS24165 (PQP84_24165) | 63065..63601 | + | 537 | WP_000949433.1 | hypothetical protein | - |
| PQP84_RS24170 (PQP84_24170) | 63604..64614 | + | 1011 | WP_000543934.1 | IS91 family transposase ISWz1 | Transposase |
| PQP84_RS24175 (PQP84_24175) | 64619..65488 | + | 870 | WP_012728230.1 | 3'-5' exonuclease | - |
| PQP84_RS24180 (PQP84_24180) | 65485..65976 | + | 492 | WP_000139717.1 | hypothetical protein | - |
| PQP84_RS24185 (PQP84_24185) | 66303..67178 | + | 876 | WP_001097010.1 | DNA replication terminus site-binding protein | - |
| PQP84_RS24190 (PQP84_24190) | 67332..68372 | + | 1041 | WP_000101568.1 | DNA-binding protein | - |
| PQP84_RS24195 (PQP84_24195) | 68659..70170 | + | 1512 | WP_000811656.1 | UvrD-helicase domain-containing protein | - |
| PQP84_RS24200 (PQP84_24200) | 70281..71321 | + | 1041 | WP_001326396.1 | conjugal transfer protein TraF | - |
| PQP84_RS24205 (PQP84_24205) | 71323..72756 | + | 1434 | WP_000256129.1 | conjugal transfer protein TraH | - |
| PQP84_RS24210 (PQP84_24210) | 72769..76383 | + | 3615 | WP_000534551.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| PQP84_RS24215 (PQP84_24215) | 76421..76783 | - | 363 | WP_000683483.1 | hypothetical protein | - |
| PQP84_RS24220 (PQP84_24220) | 77499..77771 | + | 273 | WP_000356489.1 | helix-turn-helix domain-containing protein | - |
| PQP84_RS24225 (PQP84_24225) | 77771..78304 | + | 534 | WP_000790610.1 | transglycosylase SLT domain-containing protein | - |
| PQP84_RS24230 (PQP84_24230) | 78315..78923 | + | 609 | WP_000891157.1 | hypothetical protein | - |
| PQP84_RS24235 (PQP84_24235) | 78920..79471 | + | 552 | WP_001020646.1 | FlhC family transcriptional regulator | - |
| PQP84_RS24240 (PQP84_24240) | 79531..79950 | - | 420 | WP_000651490.1 | H-NS family nucleoid-associated regulatory protein | - |
| PQP84_RS24245 (PQP84_24245) | 79952..80245 | - | 294 | WP_000919078.1 | hypothetical protein | - |
| PQP84_RS24250 (PQP84_24250) | 80262..81245 | - | 984 | WP_000077458.1 | ParM/StbA family protein | - |
| PQP84_RS24255 (PQP84_24255) | 81744..82283 | + | 540 | WP_001447712.1 | conjugative transfer protein MobI(A/C) | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|