MGE detailed information
MGE type: Prophage MGE length: 102902 bp
Accession: NZ_CP117340 Location: 2644880..2747781 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM111 Replicon: chromosome
Accession: NZ_CP117340 Location: 2644880..2747781 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM111 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ02_RS13000 () | 2640609..2641067 | + | 459 | WP_000156283.1 | DUF986 family protein | - |
| PQQ02_RS13005 () | 2641477..2642043 | + | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| PQQ02_RS13010 () | 2642040..2642849 | - | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| PQQ02_RS13015 () | 2642915..2644660 | - | 1746 | WP_000730323.1 | peptidoglycan glycosyltransferase FtsI | - |
| PQQ02_RS13020 () | 2644880..2645089 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| PQQ02_RS13025 () | 2645102..2645245 | - | 144 | WP_001675517.1 | DUF2627 domain-containing protein | - |
| PQQ02_RS13030 () | 2645894..2646181 | - | 288 | WP_001000659.1 | YebO family protein | - |
| PQQ02_RS13035 () | 2646252..2646395 | - | 144 | WP_000847421.1 | PhoP/PhoQ regulator MgrB | - |
| PQQ02_RS13040 () | 2646553..2646792 | + | 240 | WP_001236777.1 | invasion protein YobH | - |
| PQQ02_RS13045 () | 2647004..2647795 | - | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| PQQ02_RS13050 () | 2647971..2649344 | + | 1374 | WP_000416139.1 | MFS transporter | - |
| PQQ02_RS13055 () | 2649392..2650273 | - | 882 | WP_000984498.1 | protease HtpX | - |
| PQQ02_RS13060 () | 2650466..2652514 | - | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| PQQ02_RS13065 () | 2652534..2653220 | - | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| PQQ02_RS13070 () | 2653318..2653815 | - | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| PQQ02_RS13075 () | 2653944..2655227 | + | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| PQQ02_RS13080 () | 2655196..2657829 | + | 2634 | WP_001752430.1 | Intermembrane transport protein YebT | VF |
| PQQ02_RS13085 () | 2657907..2659346 | + | 1440 | WP_001531515.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PQQ02_RS13090 () | 2659464..2659700 | + | 237 | WP_024131108.1 | YebV family protein | - |
| PQQ02_RS13095 () | 2659811..2660002 | + | 192 | WP_000457838.1 | DUF1482 family protein | - |
| PQQ02_RS13100 () | 2660021..2660671 | - | 651 | WP_000986173.1 | protein-serine/threonine phosphatase | - |
| PQQ02_RS13105 () | 2660895..2661059 | - | 165 | WP_001134856.1 | membrane protein | - |
| PQQ02_RS13110 () | 2661344..2662066 | - | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| PQQ02_RS13115 () | 2662750..2663091 | + | 342 | WP_001752424.1 | DUF1398 family protein | - |
| PQQ02_RS13120 () | 2663473..2663949 | + | 477 | WP_000030946.1 | hypothetical protein | - |
| PQQ02_RS13125 () | 2664322..2664741 | - | 420 | WP_000354407.1 | GNAT family N-acetyltransferase | - |
| PQQ02_RS13130 () | 2665111..2665380 | + | 270 | WP_001752421.1 | hypothetical protein | - |
| PQQ02_RS13135 () | 2665546..2665686 | + | 141 | WP_001617922.1 | hypothetical protein | - |
| PQQ02_RS13140 () | 2665832..2667026 | - | 1195 | Protein_2570 | IS256 family transposase IS285 | Transposase |
| PQQ02_RS24735 () | 2667402..2667518 | + | 117 | WP_231919481.1 | integrase | - |
| PQQ02_RS13150 () | 2668814..2669729 | + | 916 | Protein_2572 | DMT family transporter | - |
| PQQ02_RS13155 () | 2669862..2670020 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PQQ02_RS13160 () | 2670030..2670644 | + | 615 | WP_000848073.1 | disulfide bond formation protein B | - |
| PQQ02_RS13165 () | 2670971..2671138 | - | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| PQQ02_RS13170 () | 2671792..2671917 | - | 126 | WP_001574229.1 | hypothetical protein | - |
| PQQ02_RS13175 () | 2671917..2672096 | + | 180 | Protein_2577 | IS3 family transposase | - |
| PQQ02_RS13180 () | 2672485..2672685 | + | 201 | WP_001751604.1 | PagK family vesicle-borne virulence factor | - |
| PQQ02_RS13185 () | 2672782..2673257 | - | 476 | Protein_2579 | tail fiber assembly protein | - |
| PQQ02_RS13190 () | 2673274..2673609 | - | 336 | Protein_2580 | macro domain-containing protein | - |
| PQQ02_RS13195 () | 2673824..2674089 | - | 266 | Protein_2581 | DUF1441 family protein | - |
| PQQ02_RS13200 () | 2674144..2674335 | + | 192 | WP_001034751.1 | hypothetical protein | - |
| PQQ02_RS13205 () | 2674400..2674567 | + | 168 | WP_000789530.1 | lytic enzyme | - |
| PQQ02_RS13210 () | 2674824..2675357 | - | 534 | WP_000055326.1 | DUF2514 domain-containing protein | - |
| PQQ02_RS13215 () | 2675354..2675602 | - | 249 | Protein_2585 | glycoside hydrolase family 19 protein | - |
| PQQ02_RS13220 () | 2675750..2676745 | + | 996 | Protein_2586 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| PQQ02_RS13225 () | 2676775..2677854 | + | 1080 | WP_000087644.1 | hypothetical protein ; Integrase | Integrase |
| PQQ02_RS13230 () | 2678808..2679608 | + | 801 | WP_001536069.1 | hypothetical protein | - |
| PQQ02_RS13235 () | 2679637..2679878 | - | 242 | Protein_2589 | recombinase family protein | - |
| PQQ02_RS13240 () | 2680088..2680810 | + | 723 | WP_000161701.1 | Guanine nucleotide exchange factor SopE | VF |
| PQQ02_RS13245 () | 2681012..2681581 | - | 570 | WP_000143180.1 | tail fiber assembly protein | - |
| PQQ02_RS13250 () | 2681581..2683998 | - | 2418 | WP_001574223.1 | prophage tail fiber N-terminal domain-containing protein | - |
| PQQ02_RS13255 () | 2684052..2684288 | - | 237 | WP_223229643.1 | hypothetical protein | - |
| PQQ02_RS13260 () | 2684333..2685196 | - | 864 | WP_072100756.1 | DUF1983 domain-containing protein | - |
| PQQ02_RS13265 () | 2685236..2687685 | - | 2450 | Protein_2595 | host specificity protein J | - |
| PQQ02_RS13270 () | 2687757..2688461 | - | 705 | WP_001576012.1 | tail assembly protein | - |
| PQQ02_RS13275 () | 2688365..2689096 | - | 732 | WP_000606352.1 | C40 family peptidase | - |
| PQQ02_RS13280 () | 2689106..2689801 | - | 696 | WP_001152416.1 | phage minor tail protein L | - |
| PQQ02_RS13285 () | 2689891..2690424 | + | 534 | WP_000877926.1 | Superoxide dismutase [Cu-Zn] 1 | VF |
| PQQ02_RS13290 () | 2690541..2691038 | - | 498 | WP_000725268.1 | Attachment invasion locus protein | VF |
| PQQ02_RS13295 () | 2691137..2691469 | - | 333 | WP_000978295.1 | phage tail protein | - |
| PQQ02_RS13300 () | 2691466..2694453 | - | 2988 | WP_077906652.1 | phage tail tape measure protein | - |
| PQQ02_RS13305 () | 2694533..2694862 | - | 330 | WP_010989009.1 | phage tail assembly protein T | - |
| PQQ02_RS13310 () | 2694859..2695257 | - | 399 | WP_000478858.1 | phage minor tail protein G | - |
| PQQ02_RS13315 () | 2695303..2696052 | - | 750 | WP_000132757.1 | phage tail protein | - |
| PQQ02_RS13320 () | 2696064..2696465 | - | 402 | WP_000196703.1 | phage minor tail U family protein | - |
| PQQ02_RS13325 () | 2696462..2697028 | - | 567 | WP_000453192.1 | phage tail protein | - |
| PQQ02_RS13330 () | 2697009..2697308 | - | 300 | WP_000774239.1 | ATP-binding protein | - |
| PQQ02_RS13335 () | 2697301..2697624 | - | 324 | WP_001107908.1 | DUF2190 family protein | - |
| PQQ02_RS13340 () | 2697715..2699796 | - | 2082 | WP_010989008.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| PQQ02_RS13345 () | 2699720..2701267 | - | 1548 | WP_001009211.1 | phage portal protein | - |
| PQQ02_RS13350 () | 2701264..2701470 | - | 207 | WP_000196190.1 | hypothetical protein | - |
| PQQ02_RS13355 () | 2701467..2703605 | - | 2139 | WP_000989241.1 | phage terminase large subunit family protein | - |
| PQQ02_RS13360 () | 2703562..2704095 | - | 534 | WP_024139201.1 | DUF1441 family protein | - |
| PQQ02_RS13365 () | 2704303..2704782 | - | 480 | WP_001541990.1 | lysis protein | - |
| PQQ02_RS13370 () | 2704800..2705252 | - | 453 | WP_000984586.1 | glycoside hydrolase family protein | - |
| PQQ02_RS13375 () | 2705236..2705565 | - | 330 | WP_001574216.1 | phage holin, lambda family | - |
| PQQ02_RS13380 () | 2705841..2706527 | + | 687 | WP_001574215.1 | type III secretion system effector protease GtgA | - |
| PQQ02_RS13385 () | 2706888..2707337 | + | 450 | WP_000798708.1 | hypothetical protein | - |
| PQQ02_RS13390 () | 2707711..2708238 | - | 528 | WP_000971762.1 | hypothetical protein | - |
| PQQ02_RS13395 () | 2708332..2709021 | - | 690 | WP_001097218.1 | bacteriophage antitermination protein Q | - |
| PQQ02_RS13400 () | 2709018..2709154 | - | 137 | Protein_2622 | YlcG family protein | - |
| PQQ02_RS13405 () | 2709151..2709291 | - | 141 | Protein_2623 | recombination protein NinG | - |
| PQQ02_RS13410 () | 2709375..2709974 | - | 600 | WP_000940753.1 | DUF1367 family protein | - |
| PQQ02_RS13415 () | 2710038..2710256 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| PQQ02_RS13420 () | 2710558..2710656 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| PQQ02_RS13425 () | 2710975..2712954 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| PQQ02_RS13430 () | 2713351..2714481 | + | 1131 | WP_000529512.1 | GGDEF domain-containing protein | - |
| PQQ02_RS13435 () | 2714768..2715163 | - | 396 | WP_000089417.1 | DUF977 family protein | - |
| PQQ02_RS13440 () | 2715176..2715718 | - | 543 | WP_158000546.1 | replication protein P | - |
| PQQ02_RS13445 () | 2715630..2716628 | - | 999 | WP_000729536.1 | DUF1376 domain-containing protein | - |
| PQQ02_RS13450 () | 2716675..2717169 | - | 495 | WP_001574210.1 | toxin YdaT family protein | - |
| PQQ02_RS13455 () | 2717156..2717410 | - | 255 | WP_001033912.1 | helix-turn-helix transcriptional regulator | - |
| PQQ02_RS13460 () | 2717509..2717907 | + | 399 | WP_001574209.1 | helix-turn-helix domain-containing protein | - |
| PQQ02_RS13465 () | 2718349..2718663 | - | 315 | WP_071591195.1 | hypothetical protein | - |
| PQQ02_RS13470 () | 2718925..2719200 | + | 276 | WP_000103933.1 | hypothetical protein | - |
| PQQ02_RS13475 () | 2719204..2719410 | + | 207 | WP_000682660.1 | cell division inhibitor protein | - |
| PQQ02_RS13480 () | 2719486..2719821 | + | 336 | WP_000799627.1 | hypothetical protein | - |
| PQQ02_RS13485 () | 2719962..2722652 | + | 2691 | WP_000023732.1 | exodeoxyribonuclease VIII | - |
| PQQ02_RS13490 () | 2722645..2723475 | + | 831 | WP_024139186.1 | recombination protein RecT | - |
| PQQ02_RS13495 () | 2723522..2723707 | + | 186 | WP_000280163.1 | DUF1187 family protein | - |
| PQQ02_RS13500 () | 2723806..2724234 | + | 429 | WP_000743301.1 | hypothetical protein | - |
| PQQ02_RS13505 () | 2724295..2724573 | + | 279 | WP_001675651.1 | excisionase | - |
| PQQ02_RS13510 () | 2724548..2725627 | + | 1080 | WP_000087638.1 | hypothetical protein ; Integrase | Integrase |
| - | 2725765..2725910 | + | 146 | - | - | Antitoxin Detail |
| - | 2725767..2725870 | - | 104 | - | - | Toxin Detail |
| PQQ02_RS13515 () | 2726010..2726363 | - | 354 | WP_000722368.1 | YebY family protein | - |
| PQQ02_RS13520 () | 2726380..2727255 | - | 876 | WP_000979703.1 | copper homeostasis membrane protein CopD | - |
| PQQ02_RS13525 () | 2727256..2727630 | - | 375 | WP_001751617.1 | CopC domain-containing protein YobA | - |
| PQQ02_RS13530 () | 2727768..2727998 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQQ02_RS13535 () | 2728106..2728738 | + | 633 | WP_274891511.1 | carbon-nitrogen hydrolase family protein | - |
| PQQ02_RS13540 () | 2728786..2729484 | + | 699 | WP_000944287.1 | exodeoxyribonuclease X | - |
| PQQ02_RS13545 () | 2729521..2731572 | - | 2052 | WP_000936999.1 | oligopeptidase B | - |
| PQQ02_RS13550 () | 2731785..2732444 | - | 660 | WP_000024709.1 | tellurite resistance TerB family protein | - |
| PQQ02_RS13555 () | 2732538..2732891 | - | 354 | WP_001042123.1 | protein YebF | - |
| PQQ02_RS13560 () | 2732959..2733249 | - | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PQQ02_RS13565 () | 2733380..2734558 | + | 1179 | WP_000173430.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PQQ02_RS13570 () | 2734658..2735299 | - | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PQQ02_RS13575 () | 2735337..2737148 | - | 1812 | WP_001069124.1 | phosphogluconate dehydratase | - |
| PQQ02_RS13580 () | 2737383..2738858 | - | 1476 | WP_000301704.1 | glucose-6-phosphate dehydrogenase | - |
| PQQ02_RS13585 () | 2739200..2740069 | + | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| PQQ02_RS13590 () | 2740193..2741635 | + | 1443 | WP_000091156.1 | pyruvate kinase | - |
| PQQ02_RS13595 () | 2741708..2742679 | - | 972 | WP_000448401.1 | Lipid A biosynthesis myristoyltransferase | VF |
| PQQ02_RS13600 () | 2742796..2744115 | - | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| PQQ02_RS13605 () | 2744131..2745075 | - | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| PQQ02_RS13610 () | 2745154..2745909 | + | 756 | WP_000203013.1 | Zinc import ATP-binding protein ZnuC | VF |
| PQQ02_RS13615 () | 2745906..2746691 | + | 786 | WP_000571508.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| PQQ02_RS13620 () | 2746770..2747781 | - | 1012 | Protein_2666 | Holliday junction ATP-dependent DNA helicase RuvB | VF |
| PQQ02_RS13625 () | 2747790..2748401 | - | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| PQQ02_RS13630 () | 2748761..2749453 | - | 693 | WP_001675835.1 | hypothetical protein | - |
| PQQ02_RS13635 () | 2749662..2750258 | + | 597 | WP_000716751.1 | YebB family permuted papain-like enzyme | - |
| PQQ02_RS13640 () | 2750358..2751854 | - | 1497 | WP_000974701.1 | substrate-binding domain-containing protein | - |
| PQQ02_RS13645 () | 2751885..2752406 | - | 522 | WP_000022510.1 | crossover junction endodeoxyribonuclease RuvC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|