MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 89004 bp
Accession: NZ_CP117004 Location: 1..89004 Organism: Escherichia coli strain MLI108K3 Replicon: plasmid p89_MLI108-3
Accession: NZ_CP117004 Location: 1..89004 Organism: Escherichia coli strain MLI108K3 Replicon: plasmid p89_MLI108-3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL411_RS01105 (1) | 1..978 | + | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| NL411_RS01110 (1263) | 1263..2003 | - | 741 | WP_001066942.1 | tyrosine-type recombinase/integrase | - |
| NL411_RS01115 (2124) | 2124..2319 | - | 196 | Protein_2 | serine/threonine protein kinase | - |
| NL411_RS01120 (2364) | 2364..2658 | - | 295 | Protein_3 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| NL411_RS01130 (3815) | 3815..4429 | + | 615 | WP_001541939.1 | acid-sensing system DNA-binding response regulator EvgA | - |
| NL411_RS01135 (4434) | 4434..8027 | + | 3594 | WP_255091796.1 | acid-sensing system histidine kinase EvgS | - |
| NL411_RS01140 (8083) | 8083..8238 | - | 156 | Protein_7 | CoA:oxalate CoA-transferase | - |
| NL411_RS01145 (8294) | 8294..8703 | + | 410 | Protein_8 | IS1 family transposase | - |
| NL411_RS01150 (8693) | 8693..8833 | + | 141 | Protein_9 | IS630 family transposase | - |
| NL411_RS01155 (8895) | 8895..9839 | - | 945 | WP_128550531.1 | Lipid A biosynthesis myristoyltransferase 2 | VF |
| NL411_RS01160 (9904) | 9904..10854 | - | 951 | WP_001724269.1 | virulence factor VirK | - |
| NL411_RS01165 (10859) | 10859..11947 | - | 1089 | WP_072672225.1 | putative hexosyltransferase CapU | - |
| NL411_RS01170 (11950) | 11950..12792 | - | 843 | WP_160371899.1 | polysaccharide deacetylase family protein | - |
| NL411_RS01175 (12978) | 12978..13265 | + | 288 | Protein_14 | IS3 family transposase ISEc52 | Transposase |
| NL411_RS01180 (13333) | 13333..14484 | + | 1152 | WP_032201132.1 | IS30 family transposase IS30D | Transposase |
| NL411_RS01185 (14494) | 14494..15399 | + | 906 | Protein_16 | IS3 family transposase IS911 | Transposase |
| NL411_RS01190 (15482) | 15482..15739 | + | 258 | WP_000177057.1 | hypothetical protein | - |
| NL411_RS01195 (16297) | 16297..17064 | - | 768 | WP_000175457.1 | Fe(3+) dicitrate transport ATP-binding protein FecE | VF |
| NL411_RS01200 (17065) | 17065..18021 | - | 957 | WP_000684856.1 | Fe(3+) dicitrate transport system permease protein FecD | VF |
| NL411_RS01205 (18018) | 18018..19016 | - | 999 | WP_000125187.1 | Fe(3+) dicitrate transport system permease protein FecC | VF |
| NL411_RS01210 (19013) | 19013..19915 | - | 903 | WP_128550533.1 | Fe(3+) dicitrate ABC transporter substrate-binding protein FecB | - |
| NL411_RS01215 (19960) | 19960..22284 | - | 2325 | WP_001541949.1 | TonB-dependent Fe(3+) dicitrate receptor FecA | - |
| NL411_RS01220 (22371) | 22371..23324 | - | 954 | WP_025269866.1 | ferric citrate uptake sigma factor regulator FecR | - |
| NL411_RS01225 (23321) | 23321..23842 | - | 522 | WP_001541951.1 | putative RNA polymerase sigma factor FecI | VF |
| NL411_RS01230 (23979) | 23979..24047 | + | 69 | WP_211180522.1 | protein YkiE | - |
| NL411_RS01235 (24134) | 24134..24831 | + | 698 | WP_244437904.1 | IS1 family transposase | - |
| NL411_RS01240 (25174) | 25174..26178 | - | 1005 | WP_000427619.1 | IS110 family transposase IS5075 | Transposase |
| NL411_RS01245 (26534) | 26534..27310 | + | 777 | WP_022631027.1 | MBL fold metallo-hydrolase | - |
| NL411_RS01250 (27326) | 27326..28315 | + | 990 | WP_001541953.1 | HTH-type transcriptional regulator CdhR | VF |
| NL411_RS01255 (28324) | 28324..28725 | + | 402 | WP_001541954.1 | ester cyclase | - |
| NL411_RS01260 (28832) | 28832..29473 | - | 642 | WP_001541955.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| NL411_RS01265 (29930) | 29930..30028 | + | 99 | Protein_32 | IS3 family transposase | - |
| NL411_RS01270 (30344) | 30344..30625 | + | 282 | WP_241547574.1 | biofilm development regulator YmgB/AriR family protein | - |
| NL411_RS01275 (30771) | 30771..31468 | + | 698 | Protein_34 | IS1-like element IS1A family transposase | - |
| NL411_RS01280 (31478) | 31478..31636 | + | 159 | Protein_35 | IS3 family transposase | - |
| NL411_RS01285 (31718) | 31718..33043 | + | 1326 | WP_004117991.1 | reactive chlorine resistance oxidoreductase RclA | - |
| NL411_RS01290 (33203) | 33203..33900 | + | 698 | Protein_37 | IS1-like element IS1SD family transposase | - |
| NL411_RS01295 (33970) | 33970..34071 | + | 102 | WP_236901755.1 | copper resistance protein CopC | - |
| NL411_RS01300 (34168) | 34168..34428 | - | 261 | WP_004118092.1 | DUF2534 family protein | - |
| NL411_RS01305 (34485) | 34485..36548 | - | 2064 | WP_032435791.1 | TonB-dependent copper receptor | - |
| NL411_RS01310 (36631) | 36631..37029 | - | 399 | WP_228990980.1 | DUF2946 domain-containing protein | - |
| NL411_RS01315 (37411) | 37411..38415 | + | 1005 | WP_021546935.1 | IS110 family transposase IS4321R | Transposase |
| NL411_RS01320 (38890) | 38890..39150 | + | 261 | Protein_43 | IS3 family transposase ISSfl10 | Transposase |
| NL411_RS01325 (39160) | 39160..39333 | - | 174 | Protein_44 | hypothetical protein | - |
| NL411_RS01330 (39345) | 39345..39482 | - | 138 | WP_152931508.1 | hypothetical protein | - |
| NL411_RS01335 (39535) | 39535..39813 | - | 279 | WP_250145987.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| NL411_RS01340 (39813) | 39813..40082 | - | 270 | WP_000079938.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| NL411_RS01345 (40155) | 40155..40295 | - | 141 | WP_160784086.1 | hypothetical protein | - |
| NL411_RS01350 (40996) | 40996..41853 | - | 858 | WP_025269864.1 | incFII family plasmid replication initiator RepA | - |
| NL411_RS01355 (41846) | 41846..41920 | - | 75 | WP_061357229.1 | RepA leader peptide Tap | - |
| NL411_RS01360 (42152) | 42152..42409 | - | 258 | WP_001541895.1 | replication regulatory protein RepA | - |
| NL411_RS01365 (42693) | 42693..42842 | - | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| - (42886) | 42886..42947 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| - (42886) | 42886..42947 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| - (42886) | 42886..42947 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| - (42886) | 42886..42947 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| NL411_RS01370 (43289) | 43289..43501 | - | 213 | WP_001541896.1 | ANR family transcriptional regulator | - |
| NL411_RS01375 (43636) | 43636..44196 | - | 561 | WP_097734074.1 | fertility inhibition protein FinO | - |
| NL411_RS01380 (44251) | 44251..44997 | - | 747 | WP_001541899.1 | conjugal transfer pilus acetylase TraX | - |
| NL411_RS01385 (45017) | 45017..50287 | - | 5271 | WP_255091791.1 | Multifunctional conjugation protein TraI | Relaxase |
| NL411_RS01390 (50287) | 50287..52458 | - | 2172 | WP_128550519.1 | type IV conjugative transfer system coupling protein TraD | - |
| NL411_RS01395 (52711) | 52711..53442 | - | 732 | WP_024192715.1 | conjugal transfer complement resistance protein TraT | - |
| NL411_RS01400 (53474) | 53474..53977 | - | 504 | WP_061583830.1 | surface exclusion protein | - |
| NL411_RS01405 (53992) | 53992..56814 | - | 2823 | WP_128550521.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| NL411_RS01410 (56811) | 56811..58184 | - | 1374 | WP_255091794.1 | conjugal transfer pilus assembly protein TraH | - |
| NL411_RS01415 (58184) | 58184..58546 | - | 363 | WP_001443292.1 | P-type conjugative transfer protein TrbJ | - |
| NL411_RS01420 (58476) | 58476..59021 | - | 546 | WP_000052618.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| NL411_RS01425 (59008) | 59008..59292 | - | 285 | WP_000624110.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| NL411_RS01430 (59411) | 59411..59758 | - | 348 | WP_255091790.1 | conjugal transfer protein TrbA | - |
| NL411_RS01435 (59774) | 59774..60517 | - | 744 | WP_001030376.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| NL411_RS01440 (60510) | 60510..60767 | - | 258 | WP_255091793.1 | conjugal transfer protein TrbE | - |
| NL411_RS01445 (60794) | 60794..62602 | - | 1809 | WP_106689572.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| NL411_RS01450 (62599) | 62599..63237 | - | 639 | WP_255091792.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| NL411_RS01455 (63246) | 63246..64238 | - | 993 | WP_000830839.1 | conjugal transfer pilus assembly protein TraU | - |
| NL411_RS01460 (64235) | 64235..64867 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| NL411_RS01465 (64864) | 64864..65250 | - | 387 | WP_000099689.1 | type-F conjugative transfer system protein TrbI | - |
| NL411_RS01470 (65247) | 65247..67874 | - | 2628 | WP_255091789.1 | type IV secretion system protein TraC | - |
| NL411_RS01475 (68034) | 68034..68255 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| NL411_RS01480 (68390) | 68390..68905 | - | 516 | WP_025269857.1 | type IV conjugative transfer system lipoprotein TraV | - |
| NL411_RS01485 (68902) | 68902..69153 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| NL411_RS01490 (69165) | 69165..69362 | - | 198 | WP_255091788.1 | conjugal transfer protein TrbD | - |
| NL411_RS01495 (69349) | 69349..69939 | - | 591 | WP_001523507.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| NL411_RS01500 (69929) | 69929..71356 | - | 1428 | WP_000146655.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| NL411_RS01505 (71356) | 71356..72084 | - | 729 | WP_001230766.1 | type-F conjugative transfer system secretin TraK | - |
| NL411_RS01510 (72071) | 72071..72637 | - | 567 | WP_000399797.1 | type IV conjugative transfer system protein TraE | - |
| NL411_RS01515 (72659) | 72659..72970 | - | 312 | WP_119164208.1 | type IV conjugative transfer system protein TraL | - |
| NL411_RS01520 (72985) | 72985..73344 | - | 360 | WP_000994781.1 | type IV conjugative transfer system pilin TraA | - |
| NL411_RS01525 (73377) | 73377..73778 | - | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| NL411_RS01530 (73871) | 73871..74422 | - | 552 | Protein_85 | conjugal transfer transcriptional regulator TraJ | - |
| NL411_RS01535 (74480) | 74480..75177 | + | 698 | Protein_86 | IS1-like element IS1SD family transposase | - |
| NL411_RS01540 (75309) | 75309..76297 | + | 989 | Protein_87 | translesion error-prone DNA polymerase V subunit UmuC | - |
| NL411_RS01545 (76302) | 76302..76694 | - | 393 | WP_000340833.1 | plasmid partitioning/stability family protein | - |
| NL411_RS01550 (76699) | 76699..77670 | - | 972 | WP_001103694.1 | plasmid segregation protein ParM | - |
| NL411_RS01555 (77899) | 77899..78543 | + | 645 | WP_000633911.1 | AAA family ATPase | - |
| NL411_RS01560 (78537) | 78537..78812 | + | 276 | WP_000239529.1 | hypothetical protein | - |
| NL411_RS01565 (78950) | 78950..79759 | - | 810 | WP_255091787.1 | site-specific integrase | - |
| NL411_RS01570 (79760) | 79760..80065 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| NL411_RS01575 (80067) | 80067..80285 | - | 219 | WP_000813637.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| NL411_RS01580 (80865) | 80865..81953 | + | 1089 | WP_000952217.1 | transcriptional repressor PifC | - |
| NL411_RS01585 (81955) | 81955..84180 | + | 2226 | WP_128550551.1 | P-loop NTPase fold protein | - |
| NL411_RS01590 (84230) | 84230..85129 | - | 900 | WP_000963206.1 | nucleotide-binding protein | - |
| NL411_RS01595 (85119) | 85119..85409 | - | 291 | WP_000538310.1 | hypothetical protein | - |
| NL411_RS01600 (87524) | 87524..88165 | + | 642 | WP_000990665.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|