MGE detailed information
MGE type: Prophage MGE length: 62977 bp
Accession: NZ_CP116994 Location: 725479..788455 Organism: Escherichia coli strain MLI108K1 Replicon: chromosome
Accession: NZ_CP116994 Location: 725479..788455 Organism: Escherichia coli strain MLI108K1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL409_RS05350 (721291) | 721291..721494 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| NL409_RS05355 (721529) | 721529..722989 | - | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| NL409_RS05360 (723078) | 723078..724445 | - | 1368 | Protein_710 | MHS family MFS transporter | - |
| NL409_RS05365 (724966) | 724966..725079 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| NL409_RS05370 (725148) | 725148..725381 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| NL409_RS05380 (726474) | 726474..727064 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| NL409_RS05385 (727162) | 727162..727737 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| NL409_RS05390 (727737) | 727737..730811 | - | 3075 | WP_072053404.1 | prophage tail fiber N-terminal domain-containing protein | - |
| NL409_RS05395 (730876) | 730876..731475 | - | 600 | WP_001230375.1 | Attachment invasion locus protein | VF |
| NL409_RS05400 (731545) | 731545..735042 | - | 3498 | WP_046464172.1 | host specificity protein J | - |
| NL409_RS05405 (735103) | 735103..735675 | - | 573 | WP_001557944.1 | tail assembly protein | - |
| NL409_RS05410 (735672) | 735672..736415 | - | 744 | WP_001441739.1 | C40 family peptidase | - |
| NL409_RS05415 (736420) | 736420..737118 | - | 699 | WP_001152619.1 | phage minor tail protein L | - |
| NL409_RS05420 (737118) | 737118..737447 | - | 330 | WP_000847347.1 | phage tail protein | - |
| NL409_RS05425 (737444) | 737444..740005 | - | 2562 | WP_046464171.1 | phage tail tape measure protein | - |
| NL409_RS05430 (739998) | 739998..740432 | - | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| NL409_RS05435 (740414) | 740414..740836 | - | 423 | WP_046464170.1 | phage minor tail protein G | - |
| NL409_RS05440 (740852) | 740852..741592 | - | 741 | WP_001349920.1 | phage tail protein | - |
| NL409_RS05445 (741600) | 741600..741995 | - | 396 | WP_021526108.1 | phage minor tail U family protein | - |
| NL409_RS05450 (741992) | 741992..742570 | - | 579 | WP_046464169.1 | phage tail protein | - |
| NL409_RS05455 (742582) | 742582..742935 | - | 354 | WP_046464168.1 | head-tail joining protein | - |
| NL409_RS05460 (742947) | 742947..743342 | - | 396 | WP_000158880.1 | DNA-packaging protein FI | - |
| NL409_RS05465 (743384) | 743384..744409 | - | 1026 | WP_046464167.1 | major capsid protein | - |
| NL409_RS05470 (744465) | 744465..744797 | - | 333 | WP_046464166.1 | head decoration protein | - |
| NL409_RS05475 (744807) | 744807..746126 | - | 1320 | WP_000123305.1 | S49 family peptidase | - |
| NL409_RS05480 (746107) | 746107..747708 | - | 1602 | WP_046464165.1 | phage portal protein | - |
| NL409_RS05485 (747705) | 747705..747911 | - | 207 | WP_000198149.1 | gpW family protein | - |
| NL409_RS05490 (747908) | 747908..749833 | - | 1926 | WP_046464164.1 | phage terminase large subunit family protein | - |
| NL409_RS05495 (749808) | 749808..750353 | - | 546 | WP_000453611.1 | DNA-packaging protein | - |
| NL409_RS05500 (750742) | 750742..750975 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| NL409_RS05505 (751033) | 751033..751443 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| NL409_RS05510 (751595) | 751595..751767 | - | 173 | Protein_740 | addiction module toxin, GnsA/GnsB family | - |
| NL409_RS05515 (751939) | 751939..752169 | - | 231 | WP_046464163.1 | protein YnfN | - |
| NL409_RS05520 (752174) | 752174..752239 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| NL409_RS05525 (752242) | 752242..752430 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| NL409_RS05530 (752441) | 752441..752653 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| NL409_RS05535 (753016) | 753016..753513 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| NL409_RS05540 (753510) | 753510..753998 | - | 489 | WP_046464162.1 | lysozyme | - |
| NL409_RS05550 (755240) | 755240..755305 | - | 66 | Protein_748 | lysozyme | - |
| NL409_RS05555 (755302) | 755302..755613 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| NL409_RS05560 (755618) | 755618..755833 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| NL409_RS05565 (756053) | 756053..756223 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| NL409_RS05570 (756587) | 756587..756802 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| NL409_RS05575 (757103) | 757103..757315 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| NL409_RS05580 (757370) | 757370..757459 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| NL409_RS05585 (757737) | 757737..758489 | - | 753 | WP_001047135.1 | antitermination protein | - |
| NL409_RS05590 (758503) | 758503..759552 | - | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| NL409_RS05595 (759554) | 759554..759832 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| NL409_RS05600 (759899) | 759899..760150 | - | 252 | WP_000980994.1 | protein Rem | - |
| NL409_RS05605 (760367) | 760367..760522 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| NL409_RS05610 (760594) | 760594..760881 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| NL409_RS05615 (760881) | 760881..761120 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| NL409_RS05620 (761145) | 761145..761450 | + | 306 | WP_001326990.1 | protein YdfV | - |
| NL409_RS05625 (761653) | 761653..761985 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| NL409_RS05630 (762422) | 762422..762571 | - | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| NL409_RS05635 (762692) | 762692..763714 | - | 1023 | Protein_765 | ISNCY family transposase ISCARN112 | Transposase |
| NL409_RS05640 (764504) | 764504..764791 | - | 288 | Protein_766 | hypothetical protein | - |
| NL409_RS05645 (765013) | 765013..765417 | + | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| NL409_RS05650 (765414) | 765414..765761 | + | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| NL409_RS05655 (765810) | 765810..767349 | + | 1540 | Protein_769 | IS66 family transposase ISEc22 | Transposase |
| NL409_RS05660 (767732) | 767732..768221 | - | 490 | Protein_770 | class I SAM-dependent methyltransferase | - |
| NL409_RS05665 (768218) | 768218..768640 | - | 423 | WP_001151262.1 | DUF977 family protein | - |
| NL409_RS05670 (768681) | 768681..769646 | - | 966 | WP_000054512.1 | hypothetical protein | - |
| NL409_RS05675 (769627) | 769627..770148 | - | 522 | WP_000705358.1 | toxin YdaT family protein | - |
| NL409_RS05680 (770132) | 770132..770362 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| NL409_RS05685 (770446) | 770446..770853 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| NL409_RS05690 (771020) | 771020..771175 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| NL409_RS05695 (771177) | 771177..771305 | + | 129 | WP_000344964.1 | protein YdfB | - |
| NL409_RS05700 (771335) | 771335..771553 | + | 219 | WP_001171942.1 | protein YdfC | - |
| NL409_RS05705 (772121) | 772121..772309 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| NL409_RS05710 (772306) | 772306..772497 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| NL409_RS05715 (772590) | 772590..775061 | + | 2472 | WP_000048342.1 | exonuclease | - |
| NL409_RS05720 (775134) | 775134..775385 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| NL409_RS05725 (775420) | 775420..776700 | + | 1281 | WP_000876958.1 | Putative defective protein IntQ ; Integrase | Integrase |
| NL409_RS05730 (776888) | 776888..777907 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| NL409_RS05735 (777919) | 777919..779133 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| NL409_RS05740 (779339) | 779339..779665 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| NL409_RS05745 (779800) | 779800..780141 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| NL409_RS05750 (780176) | 780176..780736 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| NL409_RS05755 (780739) | 780739..781449 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| NL409_RS05760 (781557) | 781557..781862 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| NL409_RS05765 (782061) | 782061..784487 | + | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| NL409_RS05770 (784548) | 784548..786971 | + | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| NL409_RS05775 (786982) | 786982..787599 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| NL409_RS05780 (787601) | 787601..788455 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| NL409_RS05785 (788498) | 788498..789112 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| NL409_RS05790 (789271) | 789271..790563 | + | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| NL409_RS05795 (790516) | 790516..791211 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| NL409_RS05800 (791336) | 791336..792556 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|