MGE detailed information
MGE type: Prophage MGE length: 50438 bp
Accession: NZ_CP116929 Location: 2159812..2210249 Organism: Escherichia coli strain MLI105 Replicon: chromosome
Accession: NZ_CP116929 Location: 2159812..2210249 Organism: Escherichia coli strain MLI105 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL421_RS10665 (2155711) | 2155711..2156931 | + | 1221 | WP_001405234.1 | DNA-binding transcriptional repressor Mlc | - |
| NL421_RS10670 (2157056) | 2157056..2157751 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| NL421_RS10675 (2157704) | 2157704..2158996 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| NL421_RS10680 (2159155) | 2159155..2159769 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| NL421_RS10685 (2159812) | 2159812..2160666 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| NL421_RS10690 (2160668) | 2160668..2161285 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| NL421_RS10695 (2161296) | 2161296..2163719 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| NL421_RS10700 (2163780) | 2163780..2166206 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| NL421_RS10705 (2166405) | 2166405..2166710 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| NL421_RS10710 (2166818) | 2166818..2167528 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| NL421_RS10715 (2167531) | 2167531..2168091 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| NL421_RS10720 (2168126) | 2168126..2168467 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| NL421_RS10725 (2168602) | 2168602..2168928 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| NL421_RS10730 (2169134) | 2169134..2170348 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| NL421_RS10735 (2170360) | 2170360..2171379 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| NL421_RS10740 (2171567) | 2171567..2172847 | - | 1281 | WP_000876958.1 | Putative defective protein IntQ ; Integrase | Integrase |
| NL421_RS10745 (2172882) | 2172882..2173133 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| NL421_RS10750 (2173206) | 2173206..2175677 | - | 2472 | WP_000048342.1 | exonuclease | - |
| NL421_RS10755 (2175770) | 2175770..2175961 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| NL421_RS10760 (2175958) | 2175958..2176146 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| NL421_RS10765 (2176230) | 2176230..2176532 | + | 303 | Protein_2072 | hypothetical protein | - |
| NL421_RS10770 (2176513) | 2176513..2177232 | + | 720 | Protein_2073 | hypothetical protein | - |
| NL421_RS10775 (2177228) | 2177228..2177795 | + | 568 | Protein_2074 | IS66 family transposase ISEc22 | Transposase |
| NL421_RS10780 (2178178) | 2178178..2178550 | - | 373 | Protein_2075 | IS66 family transposase ISEc22 | Transposase |
| NL421_RS10785 (2178734) | 2178734..2179081 | - | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| NL421_RS10790 (2179078) | 2179078..2179482 | - | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| NL421_RS10795 (2179704) | 2179704..2180125 | + | 422 | Protein_2078 | hypothetical protein | - |
| NL421_RS10800 (2180781) | 2180781..2181803 | + | 1023 | Protein_2079 | ISNCY family transposase ISCARN112 | Transposase |
| NL421_RS10805 (2181924) | 2181924..2182073 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| NL421_RS10810 (2182510) | 2182510..2182842 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| NL421_RS10815 (2183045) | 2183045..2183350 | - | 306 | WP_001326990.1 | protein YdfV | - |
| NL421_RS10820 (2183375) | 2183375..2183614 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| NL421_RS10825 (2183614) | 2183614..2183901 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| NL421_RS10830 (2183973) | 2183973..2184128 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| NL421_RS10835 (2184345) | 2184345..2184596 | + | 252 | WP_000980994.1 | protein Rem | - |
| NL421_RS10840 (2184663) | 2184663..2184941 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| NL421_RS10845 (2184943) | 2184943..2185992 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| NL421_RS10850 (2186006) | 2186006..2186758 | + | 753 | WP_001047135.1 | antitermination protein | - |
| NL421_RS10855 (2187036) | 2187036..2187125 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| NL421_RS10860 (2187180) | 2187180..2187392 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| NL421_RS10865 (2187693) | 2187693..2187908 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| NL421_RS10870 (2188272) | 2188272..2188442 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| NL421_RS10875 (2188662) | 2188662..2188877 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| NL421_RS10880 (2188882) | 2188882..2189193 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| NL421_RS10885 (2189190) | 2189190..2189723 | + | 534 | WP_001092971.1 | lysozyme | - |
| NL421_RS10890 (2189720) | 2189720..2190217 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| NL421_RS10895 (2190580) | 2190580..2190792 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| NL421_RS10900 (2190803) | 2190803..2190991 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| NL421_RS10905 (2190994) | 2190994..2191059 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| NL421_RS10910 (2191064) | 2191064..2191294 | + | 231 | WP_000720962.1 | protein YnfN | - |
| NL421_RS10915 (2191466) | 2191466..2191639 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| NL421_RS10920 (2191791) | 2191791..2192201 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| NL421_RS10925 (2192259) | 2192259..2192492 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| NL421_RS10930 (2192881) | 2192881..2193426 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| NL421_RS10935 (2193401) | 2193401..2195356 | + | 1956 | WP_167787892.1 | phage terminase large subunit family protein | - |
| NL421_RS10940 (2195308) | 2195308..2195553 | + | 246 | Protein_2107 | hypothetical protein | VF |
| NL421_RS10945 (2195618) | 2195618..2198692 | + | 3075 | WP_000279080.1 | prophage tail fiber N-terminal domain-containing protein | - |
| NL421_RS10950 (2198692) | 2198692..2199267 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| NL421_RS10955 (2199365) | 2199365..2199955 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| NL421_RS10960 (2200272) | 2200272..2200505 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| NL421_RS10965 (2200574) | 2200574..2200687 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| NL421_RS10970 (2201208) | 2201208..2202575 | + | 1368 | Protein_2113 | MHS family MFS transporter | - |
| NL421_RS10975 (2202664) | 2202664..2204124 | + | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| NL421_RS10980 (2204159) | 2204159..2204362 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| NL421_RS10985 (2204539) | 2204539..2205225 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| NL421_RS10990 (2205314) | 2205314..2206060 | - | 747 | WP_000636571.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| NL421_RS10995 (2206197) | 2206197..2208242 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| NL421_RS11000 (2208286) | 2208286..2208804 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| NL421_RS11010 (2209857) | 2209857..2210249 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| NL421_RS11015 (2210504) | 2210504..2211394 | + | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| NL421_RS11020 (2211509) | 2211509..2211613 | - | 105 | WP_211180496.1 | protein MgtT | - |
| NL421_RS11025 (2211613) | 2211613..2211708 | - | 96 | WP_000901367.1 | protein MgtS | - |
| NL421_RS11030 (2211835) | 2211835..2213022 | - | 1188 | WP_001054183.1 | efflux MFS transporter YdeE | - |
| NL421_RS11035 (2213217) | 2213217..2214115 | + | 899 | Protein_2126 | O-acetylserine/cysteine exporter | - |
| NL421_RS11040 (2214146) | 2214146..2214364 | - | 219 | WP_000803657.1 | multiple antibiotic resistance protein MarB | - |
| NL421_RS11045 (2214396) | 2214396..2214779 | - | 384 | WP_000091199.1 | MDR efflux pump AcrAB transcriptional activator MarA | - |
| NL421_RS11050 (2214799) | 2214799..2215233 | - | 435 | WP_000843414.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|