MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 134005 bp
Accession: NZ_CP116393 Location: 1777388..1911392 Organism: Streptococcus suis strain SS/UPM/MY/F001 Replicon: chromosome
Accession: NZ_CP116393 Location: 1777388..1911392 Organism: Streptococcus suis strain SS/UPM/MY/F001 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PFZ59_RS08890 (PFZ59_08890) | 1773038..1773271 | + | 234 | WP_012775068.1 | DUF2969 domain-containing protein | - |
| PFZ59_RS08905 (PFZ59_08905) | 1773866..1775071 | + | 1206 | WP_024393967.1 | 30S ribosomal protein S1 | - |
| PFZ59_RS08915 (PFZ59_08915) | 1775242..1776270 | + | 1029 | WP_277696877.1 | beta-eliminating lyase-related protein | - |
| PFZ59_RS08920 (PFZ59_08920) | 1776289..1776672 | - | 384 | WP_277696878.1 | hypothetical protein | - |
| PFZ59_RS08925 (PFZ59_08925) | 1776733..1777146 | - | 414 | WP_208582634.1 | hypothetical protein | - |
| PFZ59_RS08930 (PFZ59_08930) | 1777259..1778401 | + | 1143 | WP_277696879.1 | cysteine desulfurase family protein | - |
| PFZ59_RS08935 (PFZ59_08935) | 1778403..1779620 | + | 1218 | WP_277696880.1 | tRNA uracil 4-sulfurtransferase ThiI | - |
| PFZ59_RS08940 (PFZ59_08940) | 1779713..1780297 | + | 585 | WP_277696881.1 | hypothetical protein | - |
| PFZ59_RS08945 (PFZ59_08945) | 1780299..1780451 | + | 153 | Protein_1719 | tRNA 4-thiouridine(8) synthase ThiI | - |
| PFZ59_RS08950 (PFZ59_08950) | 1780573..1781898 | + | 1326 | WP_277696882.1 | branched-chain amino acid transport system II carrier protein | - |
| PFZ59_RS08955 (PFZ59_08955) | 1782177..1782491 | + | 315 | WP_002941330.1 | 50S ribosomal protein L21 | - |
| PFZ59_RS08960 (PFZ59_08960) | 1782538..1782831 | + | 294 | WP_009909754.1 | 50S ribosomal protein L27 | - |
| PFZ59_RS08965 (PFZ59_08965) | 1783122..1784378 | + | 1257 | WP_277697804.1 | ISL3 family transposase ISSsu6 | Transposase |
| PFZ59_RS08970 (PFZ59_08970) | 1784498..1784923 | + | 426 | Protein_1724 | IS200/IS605 family transposase | - |
| PFZ59_RS08975 (PFZ59_08975) | 1785316..1785771 | + | 456 | WP_029171825.1 | GNAT family N-acetyltransferase | - |
| PFZ59_RS08980 (PFZ59_08980) | 1785858..1786772 | + | 915 | WP_023370460.1 | hypothetical protein | VF |
| PFZ59_RS08985 (PFZ59_08985) | 1786765..1787229 | + | 465 | WP_063076928.1 | Lipoprotein signal peptidase | VF |
| PFZ59_RS08990 (PFZ59_08990) | 1787213..1788106 | + | 894 | WP_208582756.1 | RluA family pseudouridine synthase | - |
| PFZ59_RS08995 (PFZ59_08995) | 1788187..1788525 | + | 339 | WP_015646890.1 | zinc ribbon domain-containing protein YjdM | - |
| PFZ59_RS09000 (PFZ59_09000) | 1788573..1789076 | + | 504 | Protein_1730 | Pr6Pr family membrane protein | - |
| PFZ59_RS09005 (PFZ59_09005) | 1789191..1790195 | - | 1005 | WP_277696681.1 | IS5 family transposase ISSth7 | Transposase |
| PFZ59_RS09010 (PFZ59_09010) | 1790375..1792360 | + | 1986 | WP_277696883.1 | excinuclease ABC subunit UvrB | - |
| PFZ59_RS09015 (PFZ59_09015) | 1792520..1792849 | + | 330 | WP_277696732.1 | IS630 family transposase ISSsu3 | Transposase |
| PFZ59_RS09020 (PFZ59_09020) | 1792923..1793315 | + | 393 | WP_277697805.1 | IS630 family transposase ISSsu3 | Transposase |
| PFZ59_RS09025 (PFZ59_09025) | 1793521..1794398 | + | 878 | Protein_1735 | IS630 family transposase ISStso1 | Transposase |
| PFZ59_RS09030 (PFZ59_09030) | 1794488..1794721 | + | 234 | WP_277696884.1 | hypothetical protein | VF |
| PFZ59_RS09035 (PFZ59_09035) | 1794718..1796667 | + | 1950 | WP_277696885.1 | Immunoglobulin A1 protease | VF |
| PFZ59_RS09045 (PFZ59_09045) | 1797840..1798148 | + | 309 | WP_277696887.1 | hypothetical protein | - |
| PFZ59_RS09050 (PFZ59_09050) | 1798199..1799203 | + | 1005 | WP_277696681.1 | IS5 family transposase ISSth7 | Transposase |
| PFZ59_RS09055 (PFZ59_09055) | 1799313..1799540 | + | 228 | WP_277696888.1 | GNAT family N-acetyltransferase | - |
| PFZ59_RS09060 (PFZ59_09060) | 1799533..1800000 | + | 468 | WP_024385263.1 | 8-oxo-dGTP diphosphatase | - |
| PFZ59_RS09065 (PFZ59_09065) | 1800198..1801010 | + | 813 | WP_277696889.1 | transporter substrate-binding domain-containing protein | - |
| PFZ59_RS09070 (PFZ59_09070) | 1801182..1801982 | + | 801 | WP_208581697.1 | transporter substrate-binding domain-containing protein | - |
| PFZ59_RS09075 (PFZ59_09075) | 1802109..1803947 | - | 1839 | WP_277696890.1 | 1,4-alpha-glucan branching protein GlgB | - |
| PFZ59_RS09080 (PFZ59_09080) | 1804020..1805465 | - | 1446 | WP_277696891.1 | glycogen synthase GlgA | - |
| PFZ59_RS09085 (PFZ59_09085) | 1805474..1806589 | - | 1116 | WP_208581691.1 | glucose-1-phosphate adenylyltransferase subunit GlgD | - |
| PFZ59_RS09090 (PFZ59_09090) | 1806602..1807729 | - | 1128 | WP_277696892.1 | glucose-1-phosphate adenylyltransferase | - |
| PFZ59_RS09095 (PFZ59_09095) | 1807893..1808804 | - | 912 | WP_208581687.1 | hypothetical protein | VF |
| PFZ59_RS09100 (PFZ59_09100) | 1809019..1809792 | + | 774 | WP_277696893.1 | dihydroorotate dehydrogenase electron transfer subunit | - |
| PFZ59_RS09105 (PFZ59_09105) | 1809802..1810743 | + | 942 | WP_277696894.1 | dihydroorotate dehydrogenase | - |
| PFZ59_RS09110 (PFZ59_09110) | 1810908..1811603 | + | 696 | WP_277696895.1 | orotidine-5'-phosphate decarboxylase | - |
| PFZ59_RS09115 (PFZ59_09115) | 1811596..1811922 | + | 327 | WP_044774802.1 | inorganic diphosphatase | - |
| PFZ59_RS09120 (PFZ59_09120) | 1812060..1812692 | + | 633 | WP_014637891.1 | orotate phosphoribosyltransferase | - |
| PFZ59_RS09125 (PFZ59_09125) | 1812801..1813727 | + | 927 | WP_277696896.1 | Putative glycosyltransferase CsbB | VF |
| PFZ59_RS09130 (PFZ59_09130) | 1813737..1814390 | + | 654 | WP_277696897.1 | uracil-DNA glycosylase | - |
| PFZ59_RS09135 (PFZ59_09135) | 1814430..1815701 | + | 1272 | WP_015646811.1 | dihydroorotase | - |
| PFZ59_RS09145 (PFZ59_09145) | 1816927..1819041 | + | 2115 | WP_277696898.1 | hypothetical protein | VF |
| PFZ59_RS09150 (PFZ59_09150) | 1819093..1819740 | + | 648 | WP_277696899.1 | Maf family protein | - |
| PFZ59_RS09155 (PFZ59_09155) | 1819792..1820229 | + | 438 | WP_044674303.1 | YkgJ family cysteine cluster protein | - |
| PFZ59_RS09160 (PFZ59_09160) | 1820373..1821665 | + | 1293 | WP_277697789.1 | IS110 family transposase ISSsu7 | Transposase |
| PFZ59_RS09165 (PFZ59_09165) | 1822003..1822854 | + | 852 | WP_238708413.1 | Ribosome biogenesis GTPase A | VF |
| PFZ59_RS09170 (PFZ59_09170) | 1822841..1823614 | + | 774 | WP_277696900.1 | ribonuclease HII | - |
| PFZ59_RS09175 (PFZ59_09175) | 1823617..1824627 | + | 1011 | WP_277696901.1 | YdcF family protein | - |
| PFZ59_RS09180 (PFZ59_09180) | 1824667..1825923 | - | 1257 | WP_277697779.1 | ISL3 family transposase ISSsu6 | Transposase |
| PFZ59_RS09185 (PFZ59_09185) | 1826083..1826733 | - | 651 | WP_024385246.1 | hypothetical protein | VF |
| PFZ59_RS09190 (PFZ59_09190) | 1826723..1827169 | - | 447 | WP_172078239.1 | DUF1836 domain-containing protein | - |
| PFZ59_RS09195 (PFZ59_09195) | 1827266..1827577 | - | 312 | WP_172078238.1 | rhodanese-like domain-containing protein | - |
| PFZ59_RS09200 (PFZ59_09200) | 1827707..1828264 | + | 558 | WP_172078237.1 | Maltose O-acetyltransferase | VF |
| PFZ59_RS09205 (PFZ59_09205) | 1828325..1829167 | + | 843 | WP_277696902.1 | DNA-processing protein DprA | - |
| PFZ59_RS09210 (PFZ59_09210) | 1829260..1831353 | + | 2094 | WP_023370336.1 | type I DNA topoisomerase | - |
| PFZ59_RS09215 (PFZ59_09215) | 1831917..1832411 | + | 495 | WP_002936486.1 | 50S ribosomal protein L10 | - |
| PFZ59_RS09220 (PFZ59_09220) | 1832477..1832842 | + | 366 | WP_002936483.1 | 50S ribosomal protein L7/L12 | - |
| PFZ59_RS09225 (PFZ59_09225) | 1832967..1833716 | + | 750 | WP_044677314.1 | HAD family hydrolase | - |
| PFZ59_RS09230 (PFZ59_09230) | 1833912..1835246 | + | 1335 | WP_277696903.1 | methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO | - |
| PFZ59_RS09235 (PFZ59_09235) | 1835323..1836159 | + | 837 | WP_277696904.1 | AraC family transcriptional regulator | - |
| PFZ59_RS09240 (PFZ59_09240) | 1836255..1836488 | + | 234 | WP_105121220.1 | DUF6290 family protein | - |
| PFZ59_RS09245 (PFZ59_09245) | 1836481..1836759 | + | 279 | WP_105121219.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PFZ59_RS09250 (PFZ59_09250) | 1836833..1837711 | + | 879 | WP_277696905.1 | crosslink repair DNA glycosylase YcaQ family protein | - |
| PFZ59_RS09255 (PFZ59_09255) | 1837951..1838778 | + | 828 | WP_277696906.1 | alpha/beta hydrolase | - |
| PFZ59_RS09260 (PFZ59_09260) | 1838809..1839555 | + | 747 | WP_024403323.1 | alpha/beta hydrolase-fold protein | - |
| PFZ59_RS09265 (PFZ59_09265) | 1839573..1840739 | + | 1167 | WP_208582215.1 | ATP-grasp domain-containing protein | - |
| PFZ59_RS09270 (PFZ59_09270) | 1840880..1841020 | + | 141 | WP_032513066.1 | hypothetical protein | - |
| PFZ59_RS09275 (PFZ59_09275) | 1841033..1841422 | + | 390 | WP_208582214.1 | NisI/SpaI family lantibiotic immunity lipoprotein | - |
| PFZ59_RS09280 (PFZ59_09280) | 1841431..1842183 | + | 753 | WP_024407069.1 | ABC transporter ATP-binding protein YxdL | VF |
| PFZ59_RS09285 (PFZ59_09285) | 1842184..1844154 | + | 1971 | WP_208582211.1 | ABC transporter permease | - |
| PFZ59_RS09290 (PFZ59_09290) | 1844389..1844628 | + | 240 | WP_208572645.1 | DUF6290 family protein | Antitoxin Detail |
| PFZ59_RS09295 (PFZ59_09295) | 1844618..1844875 | + | 258 | WP_024410064.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PFZ59_RS09300 (PFZ59_09300) | 1844914..1845582 | + | 669 | WP_208582667.1 | Response regulator protein GraR | VF |
| PFZ59_RS09305 (PFZ59_09305) | 1845579..1846520 | + | 942 | WP_208582669.1 | sensor histidine kinase | - |
| PFZ59_RS09310 (PFZ59_09310) | 1846697..1848205 | + | 1509 | WP_208582671.1 | Phosphomannomutase/phosphoglucomutase | VF |
| PFZ59_RS09315 (PFZ59_09315) | 1848269..1849339 | - | 1071 | WP_044683310.1 | Tyrosine recombinase XerS ; Integrase | Integrase |
| PFZ59_RS09320 (PFZ59_09320) | 1849687..1851534 | - | 1848 | WP_277696907.1 | zinc-ribbon domain-containing protein | - |
| PFZ59_RS09325 (PFZ59_09325) | 1851545..1852246 | - | 702 | WP_277696908.1 | hypothetical protein | - |
| PFZ59_RS09330 (PFZ59_09330) | 1852239..1853900 | - | 1662 | WP_277696909.1 | hypothetical protein ; Integrase | Integrase |
| PFZ59_RS09335 (PFZ59_09335) | 1853897..1855750 | - | 1854 | WP_277696910.1 | hypothetical protein | - |
| PFZ59_RS09340 (PFZ59_09340) | 1855750..1857012 | - | 1263 | WP_277696911.1 | hypothetical protein ; Integrase | Integrase |
| PFZ59_RS09345 (PFZ59_09345) | 1857478..1859088 | - | 1611 | WP_277696912.1 | N-6 DNA methylase | - |
| PFZ59_RS09350 (PFZ59_09350) | 1859088..1862060 | - | 2973 | WP_277696913.1 | Eco57I restriction-modification methylase domain-containing protein | - |
| PFZ59_RS09355 (PFZ59_09355) | 1862243..1862410 | - | 168 | WP_277696914.1 | hypothetical protein | - |
| PFZ59_RS09360 (PFZ59_09360) | 1862417..1863622 | - | 1206 | WP_277696915.1 | hypothetical protein | - |
| PFZ59_RS09365 (PFZ59_09365) | 1864077..1864358 | - | 282 | WP_277696916.1 | hypothetical protein | - |
| PFZ59_RS09370 (PFZ59_09370) | 1864664..1865392 | - | 729 | WP_063077043.1 | DUF3307 domain-containing protein | - |
| PFZ59_RS09375 (PFZ59_09375) | 1865396..1866064 | - | 669 | WP_063077042.1 | SatD family protein | - |
| PFZ59_RS09380 (PFZ59_09380) | 1866257..1867831 | - | 1575 | WP_277696917.1 | signal recognition particle protein | - |
| PFZ59_RS09385 (PFZ59_09385) | 1867844..1868176 | - | 333 | WP_002935001.1 | putative DNA-binding protein | - |
| PFZ59_RS09390 (PFZ59_09390) | 1868278..1868976 | - | 699 | WP_024407059.1 | GntR family transcriptional regulator | - |
| PFZ59_RS09395 (PFZ59_09395) | 1869252..1870802 | + | 1551 | WP_277696918.1 | glutamine-hydrolyzing GMP synthase | - |
| PFZ59_RS09400 (PFZ59_09400) | 1870970..1872136 | - | 1167 | WP_277696919.1 | IS91 family transposase ISCARN110 | Transposase |
| PFZ59_RS09405 (PFZ59_09405) | 1872129..1872347 | - | 219 | WP_277696920.1 | DUF3173 family protein | - |
| PFZ59_RS09410 (PFZ59_09410) | 1872358..1872735 | - | 378 | WP_277696921.1 | hypothetical protein | - |
| PFZ59_RS09415 (PFZ59_09415) | 1872739..1873779 | - | 1041 | WP_277696922.1 | replication initiation factor domain-containing protein | - |
| PFZ59_RS09420 (PFZ59_09420) | 1874107..1874598 | - | 492 | WP_277696923.1 | hypothetical protein | - |
| PFZ59_RS09425 (PFZ59_09425) | 1874588..1874839 | - | 252 | WP_277696924.1 | hypothetical protein | - |
| PFZ59_RS09430 (PFZ59_09430) | 1875104..1875577 | + | 474 | WP_277696925.1 | ISNCY family transposase ISH7A | Transposase |
| PFZ59_RS09435 (PFZ59_09435) | 1875847..1876896 | - | 1050 | WP_277696926.1 | 5-methylcytosine-specific restriction endonuclease system specificity protein McrC | - |
| PFZ59_RS09440 (PFZ59_09440) | 1876893..1878590 | - | 1698 | WP_277696927.1 | AAA family ATPase | - |
| PFZ59_RS09445 (PFZ59_09445) | 1878786..1879574 | + | 789 | WP_277696928.1 | hypothetical protein | - |
| PFZ59_RS09450 (PFZ59_09450) | 1879656..1880549 | + | 894 | WP_277696929.1 | hypothetical protein | - |
| PFZ59_RS09455 (PFZ59_09455) | 1880578..1880925 | - | 348 | WP_277696930.1 | HIRAN domain-containing protein | - |
| PFZ59_RS09460 (PFZ59_09460) | 1880947..1881696 | - | 750 | WP_208582665.1 | DUF6287 domain-containing protein | - |
| PFZ59_RS09465 (PFZ59_09465) | 1881713..1882471 | - | 759 | WP_172012167.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| PFZ59_RS09470 (PFZ59_09470) | 1882668..1883924 | + | 1257 | WP_277697806.1 | ISL3 family transposase ISSsu6 | Transposase |
| PFZ59_RS09475 (PFZ59_09475) | 1883994..1884593 | - | 600 | WP_208582588.1 | lysozyme family protein | - |
| PFZ59_RS09480 (PFZ59_09480) | 1884594..1885568 | - | 975 | WP_015646852.1 | nucleoid-associated protein | - |
| PFZ59_RS09485 (PFZ59_09485) | 1885568..1886827 | - | 1260 | WP_208582589.1 | serine hydroxymethyltransferase | - |
| PFZ59_RS09490 (PFZ59_09490) | 1886851..1887282 | - | 432 | WP_029171785.1 | GNAT family N-acetyltransferase | - |
| PFZ59_RS09495 (PFZ59_09495) | 1887279..1887887 | - | 609 | WP_024406332.1 | L-threonylcarbamoyladenylate synthase | - |
| PFZ59_RS09500 (PFZ59_09500) | 1887874..1888707 | - | 834 | WP_277696931.1 | peptide chain release factor N(5)-glutamine methyltransferase | - |
| PFZ59_RS09505 (PFZ59_09505) | 1888707..1889786 | - | 1080 | WP_277696932.1 | peptide chain release factor 1 | - |
| PFZ59_RS09510 (PFZ59_09510) | 1890066..1890647 | - | 582 | WP_012028098.1 | thymidine kinase | - |
| PFZ59_RS09515 (PFZ59_09515) | 1891030..1891329 | - | 300 | WP_277696933.1 | excalibur calcium-binding domain-containing protein | - |
| PFZ59_RS09520 (PFZ59_09520) | 1891454..1892458 | - | 1005 | WP_277696681.1 | IS5 family transposase ISSth7 | Transposase |
| PFZ59_RS09525 (PFZ59_09525) | 1892509..1893540 | - | 1032 | WP_277696934.1 | calcium-binding protein | - |
| PFZ59_RS09530 (PFZ59_09530) | 1893675..1893857 | + | 183 | WP_002934978.1 | 4-oxalocrotonate tautomerase | - |
| PFZ59_RS09535 (PFZ59_09535) | 1893907..1895739 | - | 1833 | WP_002943192.1 | translation elongation factor 4 | - |
| PFZ59_RS09540 (PFZ59_09540) | 1895835..1896248 | - | 414 | WP_277696935.1 | nucleoside-diphosphate kinase | - |
| PFZ59_RS09545 (PFZ59_09545) | 1896271..1896858 | - | 588 | WP_277696936.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| PFZ59_RS09550 (PFZ59_09550) | 1896914..1898140 | - | 1227 | WP_277696937.1 | ATP-dependent Clp protease ATP-binding subunit ClpX | - |
| PFZ59_RS09555 (PFZ59_09555) | 1898162..1898335 | - | 174 | WP_002934972.1 | hypothetical protein | - |
| PFZ59_RS09560 (PFZ59_09560) | 1898338..1898850 | - | 513 | WP_208581913.1 | dihydrofolate reductase | - |
| PFZ59_RS09565 (PFZ59_09565) | 1899136..1899975 | - | 840 | WP_277696938.1 | thymidylate synthase | - |
| PFZ59_RS09570 (PFZ59_09570) | 1900745..1901704 | - | 960 | WP_277696939.1 | ROK family glucokinase | - |
| PFZ59_RS09575 (PFZ59_09575) | 1901800..1902135 | - | 336 | WP_024376975.1 | hypothetical protein | - |
| PFZ59_RS09580 (PFZ59_09580) | 1902136..1904004 | - | 1869 | WP_277696940.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| PFZ59_RS09585 (PFZ59_09585) | 1903997..1905208 | - | 1212 | WP_277696941.1 | CCA tRNA nucleotidyltransferase | - |
| PFZ59_RS09590 (PFZ59_09590) | 1905205..1905972 | - | 768 | WP_277696942.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
| PFZ59_RS09595 (PFZ59_09595) | 1905981..1906832 | - | 852 | WP_015646868.1 | DegV family protein | - |
| PFZ59_RS09600 (PFZ59_09600) | 1906834..1907208 | - | 375 | WP_002934959.1 | DUF1149 family protein | - |
| PFZ59_RS09605 (PFZ59_09605) | 1907274..1908325 | - | 1052 | Protein_1851 | IS630 family transposase | - |
| PFZ59_RS09610 (PFZ59_09610) | 1908400..1910355 | - | 1956 | WP_277696943.1 | fructose-specific PTS transporter subunit EIIC | - |
| PFZ59_RS09615 (PFZ59_09615) | 1910352..1911263 | - | 912 | WP_277696944.1 | 1-phosphofructokinase | - |
| PFZ59_RS09620 (PFZ59_09620) | 1911260..1912009 | - | 750 | WP_014637965.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| PFZ59_RS09625 (PFZ59_09625) | 1912113..1913168 | - | 1056 | WP_277696945.1 | histidinol-phosphate transaminase | - |
| PFZ59_RS09630 (PFZ59_09630) | 1913199..1913924 | - | 726 | WP_277696946.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| PFZ59_RS09635 (PFZ59_09635) | 1913914..1914432 | - | 519 | WP_277696947.1 | ribosome maturation factor RimM | - |
| PFZ59_RS09640 (PFZ59_09640) | 1914530..1915879 | - | 1350 | WP_277696948.1 | MATE family efflux transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|