MGE detailed information
MGE type: Genomic_island MGE length: 24942 bp
Accession: NZ_CP116145 Location: 3163583..3188524 Organism: Escherichia coli strain DETEC-P622 Replicon: chromosome
Accession: NZ_CP116145 Location: 3163583..3188524 Organism: Escherichia coli strain DETEC-P622 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIB88_RS15210 (3160431) | 3160431..3161150 | - | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
| PIB88_RS15215 (3161147) | 3161147..3162778 | - | 1632 | WP_001216462.1 | sensor histidine kinase | - |
| PIB88_RS15220 (3162959) | 3162959..3163189 | + | 231 | WP_000371715.1 | 4Fe-4S mono-cluster protein YjdI | - |
| PIB88_RS15225 (3163201) | 3163201..3163473 | + | 273 | WP_000405645.1 | GNAT family N-acetyltransferase | - |
| PIB88_RS15230 (3163583) | 3163583..3166120 | - | 2538 | WP_001296664.1 | Outer membrane usher protein FimD | VF |
| PIB88_RS15235 (3166153) | 3166153..3166845 | - | 693 | WP_000760483.1 | putative fimbrial chaperone YraI | VF |
| PIB88_RS15240 (3166910) | 3166910..3167434 | - | 525 | WP_000491818.1 | hypothetical protein | - |
| PIB88_RS15245 (3167835) | 3167835..3171647 | + | 3813 | WP_000705882.1 | Temperature-sensitive hemagglutinin tsh autotransporter | VF |
| PIB88_RS15250 (3172545) | 3172545..3173375 | + | 831 | WP_001088099.1 | AraC family transcriptional regulator | - |
| PIB88_RS15255 (3174530) | 3174530..3178459 | + | 3930 | WP_001080129.1 | Serine protease EspC | VF |
| PIB88_RS15260 (3178673) | 3178673..3178945 | + | 273 | WP_000405647.1 | GNAT family N-acetyltransferase | - |
| PIB88_RS15265 (3179173) | 3179173..3179469 | + | 297 | WP_001312331.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| PIB88_RS15270 (3179497) | 3179497..3179670 | + | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| PIB88_RS15275 (3179789) | 3179789..3181306 | - | 1518 | WP_000003806.1 | lysine--tRNA ligase | - |
| PIB88_RS15280 (3181543) | 3181543..3183000 | - | 1458 | WP_000856826.1 | dipeptide/tripeptide permease DtpC | - |
| PIB88_RS15285 (3183059) | 3183059..3185206 | - | 2148 | WP_001296667.1 | lysine decarboxylase CadA | - |
| PIB88_RS15290 (3185286) | 3185286..3186620 | - | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| PIB88_RS15295 (3186986) | 3186986..3188524 | - | 1539 | WP_001187191.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| PIB88_RS15300 (3188784) | 3188784..3188943 | - | 160 | Protein_2985 | integrase | - |
| PIB88_RS15310 (3189323) | 3189323..3189898 | - | 576 | WP_001188520.1 | transcriptional regulator | - |
| PIB88_RS15315 (3189935) | 3189935..3191632 | - | 1698 | WP_000068941.1 | protein-disulfide reductase DsbD | - |
| PIB88_RS15320 (3191608) | 3191608..3191946 | - | 339 | WP_000883409.1 | divalent cation tolerance protein CutA | - |
| PIB88_RS15325 (3192062) | 3192062..3193363 | - | 1302 | WP_000961959.1 | anaerobic C4-dicarboxylate transporter DcuA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|