MGE detailed information
MGE type: Prophage MGE length: 23828 bp
Accession: NZ_CP115661 Location: 4480990..4504817 Organism: Pseudomonas putida strain PD689_delTT1 Replicon: chromosome
Accession: NZ_CP115661 Location: 4480990..4504817 Organism: Pseudomonas putida strain PD689_delTT1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PED36_RS20390 (PED36_20390) | 4475996..4477849 | + | 1854 | WP_010954903.1 | NADH-quinone oxidoreductase subunit L | - |
| PED36_RS20395 (PED36_20395) | 4477890..4479422 | + | 1533 | WP_010954904.1 | NADH-quinone oxidoreductase subunit M | - |
| PED36_RS20400 (PED36_20400) | 4479430..4480899 | + | 1470 | WP_010954905.1 | NADH-quinone oxidoreductase subunit NuoN | - |
| PED36_RS20405 (PED36_20405) | 4480990..4481253 | - | 264 | WP_010954906.1 | ogr/Delta-like zinc finger family protein | - |
| PED36_RS20410 (PED36_20410) | 4481433..4481810 | + | 378 | WP_010954907.1 | helix-turn-helix domain-containing protein | - |
| PED36_RS20415 (PED36_20415) | 4481807..4482169 | - | 363 | WP_010954908.1 | hypothetical protein | - |
| PED36_RS20420 (PED36_20420) | 4482162..4482509 | - | 348 | WP_010954909.1 | head completion/stabilization protein | - |
| PED36_RS20425 (PED36_20425) | 4482521..4482769 | - | 249 | WP_003251454.1 | Transcriptional activator protein LasR | VF |
| PED36_RS20430 (PED36_20430) | 4482990..4485062 | + | 2073 | WP_010954910.1 | TonB-dependent receptor | - |
| PED36_RS20435 (PED36_20435) | 4485166..4485726 | - | 561 | WP_003251456.1 | class I chromate reductase ChrR | - |
| PED36_RS20440 (PED36_20440) | 4485883..4486101 | + | 219 | WP_010954911.1 | hypothetical protein | - |
| PED36_RS20445 (PED36_20445) | 4486085..4488334 | - | 2250 | WP_049588234.1 | Orn/Lys/Arg decarboxylase N-terminal domain-containing protein | - |
| PED36_RS20450 (PED36_20450) | 4488462..4489220 | - | 759 | WP_010954912.1 | DNA polymerase III subunit epsilon | - |
| PED36_RS20455 (PED36_20455) | 4489271..4489717 | - | 447 | WP_003251460.1 | ribonuclease HI | - |
| PED36_RS20460 (PED36_20460) | 4489733..4490506 | - | 774 | WP_003251461.1 | methyltransferase domain-containing protein | - |
| PED36_RS20465 (PED36_20465) | 4490592..4491371 | + | 780 | WP_010954914.1 | hydroxyacylglutathione hydrolase | - |
| PED36_RS20470 (PED36_20470) | 4491472..4492902 | + | 1431 | WP_010954915.1 | Membrane-bound lytic murein transglycosylase D | VF |
| PED36_RS20475 (PED36_20475) | 4493123..4494952 | + | 1830 | WP_010954916.1 | extracellular solute-binding protein | - |
| PED36_RS20480 (PED36_20480) | 4494949..4496784 | + | 1836 | WP_010954917.1 | extracellular solute-binding protein | - |
| PED36_RS20485 (PED36_20485) | 4496786..4497859 | + | 1074 | WP_010954918.1 | microcin C ABC transporter permease YejB | - |
| PED36_RS20490 (PED36_20490) | 4497861..4498880 | + | 1020 | WP_010954919.1 | ABC transporter permease | - |
| PED36_RS20495 (PED36_20495) | 4498882..4500486 | + | 1605 | WP_010954920.1 | putative ABC transporter ATP-binding protein YejF | VF |
| PED36_RS20500 (PED36_20500) | 4500634..4501101 | + | 468 | WP_049588231.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| PED36_RS20505 (PED36_20505) | 4501098..4501673 | + | 576 | WP_010954922.1 | PIN domain-containing protein | Toxin Detail |
| PED36_RS20510 (PED36_20510) | 4501887..4504817 | + | 2931 | WP_049588229.1 | aminotransferase | - |
| PED36_RS20515 (PED36_20515) | 4504821..4506044 | - | 1224 | WP_010954925.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| PED36_RS20520 (PED36_20520) | 4506135..4507040 | + | 906 | WP_010954926.1 | LysR family transcriptional regulator | - |
| PED36_RS20525 (PED36_20525) | 4507102..4507797 | - | 696 | WP_010954927.1 | response regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Pseudomonas putida KT2440 | Prophage | TA313, TA20571 | NC_002947 | 4671229..4695056 | 0 |