MGE detailed information
MGE type: Prophage MGE length: 61680 bp
Accession: NZ_CP110931 Location: 2576938..2638617 Organism: Salmonella enterica strain XM3104 Replicon: chromosome
Accession: NZ_CP110931 Location: 2576938..2638617 Organism: Salmonella enterica strain XM3104 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ORG44_RS12655 (2572165) | 2572165..2573799 | - | 1635 | WP_023234893.1 | ABC transporter substrate-binding protein | - |
| ORG44_RS12660 (2574481) | 2574481..2574795 | + | 315 | WP_000182479.1 | TRL-like family protein | - |
| ORG44_RS12665 (2574944) | 2574944..2575471 | + | 528 | WP_038393981.1 | cytochrome b | - |
| ORG44_RS12670 (2575556) | 2575556..2576599 | - | 1044 | WP_000780157.1 | exo-alpha-sialidase | - |
| ORG44_RS12675 (2576938) | 2576938..2577405 | - | 468 | WP_023234892.1 | Hsp20 family protein | - |
| ORG44_RS12680 (2577606) | 2577606..2577829 | - | 224 | Protein_2483 | hypothetical protein | - |
| ORG44_RS12685 (2578532) | 2578532..2578876 | + | 345 | WP_000977722.1 | c-type lysozyme inhibitor | - |
| ORG44_RS12695 (2580098) | 2580098..2580655 | - | 558 | WP_000789471.1 | Attachment invasion locus protein | VF |
| ORG44_RS12700 (2581467) | 2581467..2581730 | + | 264 | WP_012664625.1 | virulence protein PagD | - |
| ORG44_RS12705 (2581862) | 2581862..2582074 | + | 213 | WP_001539813.1 | cold shock-like protein CspF | - |
| ORG44_RS12710 (2582489) | 2582489..2583010 | + | 522 | WP_001532066.1 | RICIN domain-containing protein | - |
| ORG44_RS12715 (2583201) | 2583201..2583440 | + | 240 | WP_000497451.1 | virulence protein MsgA | - |
| ORG44_RS12720 (2583930) | 2583930..2584718 | + | 789 | WP_001033398.1 | hypothetical protein | - |
| ORG44_RS12725 (2585705) | 2585705..2586828 | - | 1124 | Protein_2491 | type III secretion system effector SopF | - |
| ORG44_RS12730 (2587276) | 2587276..2587446 | - | 171 | Protein_2492 | isocitrate/isopropylmalate family dehydrogenase | - |
| ORG44_RS12735 (2587595) | 2587595..2587936 | + | 342 | WP_023234889.1 | hypothetical protein | - |
| ORG44_RS12740 (2588160) | 2588160..2588336 | - | 177 | Protein_2494 | IS4/IS5 family transposase | - |
| ORG44_RS12745 (2588582) | 2588582..2589649 | + | 1068 | WP_223557578.1 | LD-carboxypeptidase | - |
| ORG44_RS12750 (2589940) | 2589940..2591556 | + | 1617 | WP_023234888.1 | peptide ABC transporter substrate-binding protein | - |
| ORG44_RS12755 (2591843) | 2591843..2591986 | - | 144 | Protein_2497 | integrase core domain-containing protein | - |
| ORG44_RS12760 (2592293) | 2592293..2592586 | - | 294 | WP_001539801.1 | Bro-N domain-containing protein | - |
| ORG44_RS12765 (2592572) | 2592572..2593621 | + | 1050 | WP_187148224.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| ORG44_RS12770 (2593752) | 2593752..2594060 | - | 309 | WP_001539798.1 | hypothetical protein | - |
| ORG44_RS12775 (2594063) | 2594063..2594302 | - | 240 | WP_023228861.1 | hypothetical protein | - |
| ORG44_RS12780 (2594360) | 2594360..2594512 | - | 153 | Protein_2502 | helix-turn-helix domain-containing protein | - |
| ORG44_RS12785 (2595159) | 2595159..2595677 | - | 519 | WP_023234886.1 | tail fiber assembly protein | - |
| ORG44_RS12790 (2595692) | 2595692..2598370 | - | 2679 | WP_038393980.1 | prophage tail fiber N-terminal domain-containing protein | - |
| ORG44_RS12795 (2598424) | 2598424..2598660 | - | 237 | WP_001617893.1 | hypothetical protein | - |
| ORG44_RS12800 (2598705) | 2598705..2602067 | - | 3363 | WP_023234884.1 | host specificity protein J | - |
| ORG44_RS12805 (2602130) | 2602130..2602777 | - | 648 | WP_023236538.1 | tail assembly protein | - |
| ORG44_RS12810 (2602675) | 2602675..2603412 | - | 738 | WP_000662740.1 | C40 family peptidase | - |
| ORG44_RS12815 (2603419) | 2603419..2604117 | - | 699 | WP_001539790.1 | phage minor tail protein L | - |
| ORG44_RS12820 (2604127) | 2604127..2604456 | - | 330 | WP_000447370.1 | phage tail protein | - |
| ORG44_RS12825 (2604459) | 2604459..2607500 | - | 3042 | WP_001539789.1 | phage tail tape measure protein | - |
| ORG44_RS12830 (2607472) | 2607472..2607810 | - | 339 | WP_077905885.1 | phage tail assembly protein T | - |
| ORG44_RS12835 (2607807) | 2607807..2608202 | - | 396 | WP_000479607.1 | phage minor tail protein G | - |
| ORG44_RS12840 (2608253) | 2608253..2608999 | - | 747 | WP_000971954.1 | phage tail tube protein | - |
| ORG44_RS12845 (2609007) | 2609007..2609408 | - | 402 | WP_000033885.1 | phage minor tail U family protein | - |
| ORG44_RS12850 (2609405) | 2609405..2609983 | - | 579 | WP_000677089.1 | phage tail protein | - |
| ORG44_RS12855 (2610089) | 2610089..2611219 | + | 1131 | WP_001539782.1 | IS200-IS605 family transposase ISEc42 | Transposase |
| ORG44_RS12860 (2611252) | 2611252..2611635 | - | 384 | WP_001539781.1 | head-tail joining protein | - |
| ORG44_RS12865 (2611646) | 2611646..2612005 | - | 360 | WP_001539780.1 | DNA-packaging protein FI | - |
| ORG44_RS12870 (2612063) | 2612063..2613091 | - | 1029 | WP_000522566.1 | major capsid protein | - |
| ORG44_RS12875 (2613146) | 2613146..2613493 | - | 348 | WP_001539777.1 | head decoration protein | - |
| ORG44_RS12880 (2613506) | 2613506..2615002 | - | 1497 | WP_006669512.1 | S49 family peptidase | - |
| ORG44_RS12885 (2614992) | 2614992..2616572 | - | 1581 | WP_000831820.1 | phage portal protein | - |
| ORG44_RS12890 (2616569) | 2616569..2616772 | - | 204 | WP_000201415.1 | gpW family protein | - |
| ORG44_RS12895 (2616756) | 2616756..2618687 | - | 1932 | WP_001539769.1 | phage terminase large subunit family protein | - |
| ORG44_RS12900 (2618659) | 2618659..2619204 | - | 546 | WP_001102154.1 | terminase small subunit | - |
| ORG44_RS12905 (2619463) | 2619463..2619966 | - | 504 | WP_023234883.1 | hypothetical protein | - |
| ORG44_RS12910 (2620069) | 2620069..2620611 | - | 543 | WP_001539764.1 | DUF2514 family protein | - |
| ORG44_RS12915 (2620608) | 2620608..2621222 | - | 615 | WP_001539762.1 | glycoside hydrolase family 19 protein | - |
| ORG44_RS12920 (2621222) | 2621222..2621503 | - | 282 | WP_000226307.1 | phage holin family protein | - |
| ORG44_RS12925 (2621490) | 2621490..2621879 | - | 390 | WP_001294873.1 | phage holin family protein | - |
| ORG44_RS12930 (2621989) | 2621989..2622333 | - | 345 | Protein_2532 | site-specific DNA-methyltransferase | - |
| ORG44_RS12935 (2622380) | 2622380..2622799 | - | 420 | WP_001539755.1 | hypothetical protein | - |
| ORG44_RS12940 (2623025) | 2623025..2623603 | - | 579 | WP_001539753.1 | DUF1133 family protein | - |
| ORG44_RS12945 (2623618) | 2623618..2624607 | - | 990 | WP_001539752.1 | DUF968 domain-containing protein | - |
| ORG44_RS12950 (2624615) | 2624615..2625475 | - | 861 | WP_001539751.1 | KilA-N domain-containing protein | - |
| ORG44_RS12955 (2625492) | 2625492..2625881 | - | 390 | WP_001539749.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ORG44_RS12960 (2625878) | 2625878..2626531 | - | 654 | WP_001539748.1 | phage N-6-adenine-methyltransferase | - |
| ORG44_RS12965 (2626531) | 2626531..2627013 | - | 483 | WP_023234881.1 | PerC family transcriptional regulator | - |
| ORG44_RS12970 (2627015) | 2627015..2627833 | - | 819 | WP_001539747.1 | helix-turn-helix domain-containing protein | - |
| ORG44_RS12975 (2627830) | 2627830..2628054 | - | 225 | WP_000620702.1 | hypothetical protein | - |
| ORG44_RS12980 (2628051) | 2628051..2628788 | - | 738 | Protein_2542 | Rha family transcriptional regulator | - |
| ORG44_RS12985 (2628912) | 2628912..2629541 | - | 630 | Protein_2543 | Rha family transcriptional regulator | - |
| ORG44_RS12990 (2629665) | 2629665..2629895 | + | 231 | WP_108429764.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ORG44_RS12995 (2629885) | 2629885..2630193 | + | 309 | WP_000147078.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| ORG44_RS13000 (2630212) | 2630212..2630388 | - | 177 | WP_001525520.1 | DUF4222 domain-containing protein | - |
| ORG44_RS13005 (2630528) | 2630528..2631082 | - | 555 | WP_000509731.1 | YmfL family putative regulatory protein | - |
| ORG44_RS13010 (2631111) | 2631111..2631335 | - | 225 | WP_001191666.1 | helix-turn-helix transcriptional regulator | - |
| ORG44_RS13015 (2631433) | 2631433..2632128 | + | 696 | WP_001020640.1 | helix-turn-helix transcriptional regulator | - |
| ORG44_RS13020 (2632463) | 2632463..2632660 | - | 198 | WP_001624554.1 | hypothetical protein | - |
| ORG44_RS13025 (2633218) | 2633218..2633574 | + | 357 | WP_001539742.1 | hypothetical protein | - |
| ORG44_RS13030 (2633632) | 2633632..2634459 | + | 828 | WP_023234876.1 | DUF2303 family protein | - |
| ORG44_RS13035 (2634596) | 2634596..2634754 | + | 159 | WP_000008355.1 | hypothetical protein | - |
| ORG44_RS13040 (2634823) | 2634823..2635068 | + | 246 | WP_000939947.1 | excisionase | - |
| ORG44_RS13045 (2635049) | 2635049..2636176 | + | 1128 | WP_001539740.1 | hypothetical protein ; Integrase | Integrase |
| ORG44_RS13050 (2636288) | 2636288..2637538 | - | 1251 | WP_023234874.1 | NADP-dependent isocitrate dehydrogenase | - |
| ORG44_RS13055 (2637710) | 2637710..2638291 | + | 582 | WP_023234873.1 | 23S rRNA pseudouridine(2457) synthase RluE | - |
| ORG44_RS13060 (2638288) | 2638288..2638617 | + | 330 | WP_000825957.1 | lysozyme inhibitor LprI family protein | - |
| ORG44_RS13065 (2638629) | 2638629..2639090 | + | 462 | WP_000476069.1 | NUDIX hydrolase | - |
| ORG44_RS13070 (2639144) | 2639144..2640250 | + | 1107 | WP_000004540.1 | tRNA 2-thiouridine(34) synthase MnmA | - |
| ORG44_RS13075 (2640337) | 2640337..2640978 | + | 642 | WP_023236528.1 | high frequency lysogenization protein HflD | - |
| ORG44_RS13080 (2640982) | 2640982..2642352 | + | 1371 | WP_000423763.1 | adenylosuccinate lyase | - |
| ORG44_RS13085 (2642479) | 2642479..2643150 | + | 672 | WP_023234872.1 | two-component system response regulator PhoP | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|