MGE detailed information
MGE type: Genomic_island MGE length: 20029 bp
Accession: NZ_CP104330 Location: 3939817..3959845 Organism: Escherichia coli strain THB42-F3 Replicon: chromosome
Accession: NZ_CP104330 Location: 3939817..3959845 Organism: Escherichia coli strain THB42-F3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N0544_RS19195 (3935296) | 3935296..3935799 | - | 504 | WP_072647342.1 | type 1 fimbria minor subunit FimG | - |
| N0544_RS19200 (3935812) | 3935812..3936342 | - | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| N0544_RS19205 (3936352) | 3936352..3938988 | - | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| N0544_RS19210 (3939055) | 3939055..3939780 | - | 726 | WP_000066547.1 | type 1 fimbria chaperone FimC | - |
| N0544_RS19215 (3939817) | 3939817..3940356 | - | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| N0544_RS19220 (3940421) | 3940421..3940969 | - | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| N0544_RS19225 (3941451) | 3941451..3942005 | - | 555 | WP_000983104.1 | Tyrosine recombinase XerD | VF |
| N0544_RS19235 (3943301) | 3943301..3943903 | - | 603 | WP_000790583.1 | ISKra4 family transposase ISCep1 | VF |
| N0544_RS19240 (3945359) | 3945359..3946075 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| N0544_RS19245 (3946095) | 3946095..3947201 | + | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| N0544_RS19250 (3947266) | 3947266..3948246 | + | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| N0544_RS19255 (3948356) | 3948356..3948561 | + | 206 | Protein_3760 | HNH endonuclease | - |
| N0544_RS19260 (3948829) | 3948829..3950069 | - | 1241 | Protein_3761 | helicase YjhR | - |
| N0544_RS19265 (3950185) | 3950185..3950316 | + | 132 | WP_001309182.1 | hypothetical protein | - |
| N0544_RS19270 (3950807) | 3950807..3951064 | + | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| N0544_RS19275 (3951076) | 3951076..3951621 | + | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| N0544_RS19280 (3951677) | 3951677..3952423 | + | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| N0544_RS19285 (3952592) | 3952592..3952810 | + | 219 | Protein_3766 | hypothetical protein | - |
| N0544_RS19290 (3952848) | 3952848..3952964 | + | 117 | Protein_3767 | VOC family protein | - |
| N0544_RS19295 (3953209) | 3953209..3954330 | + | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| N0544_RS19300 (3954327) | 3954327..3954605 | + | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| N0544_RS19305 (3954617) | 3954617..3955930 | + | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| N0544_RS19310 (3955943) | 3955943..3956749 | + | 807 | WP_000118626.1 | BtpA family protein SgcQ | - |
| N0544_RS19315 (3956880) | 3956880..3957311 | + | 432 | WP_000606406.1 | SgcA family PTS sugar transporter subunit IIA | - |
| N0544_RS19320 (3957323) | 3957323..3957955 | + | 633 | WP_000600622.1 | ribulose-phosphate 3 epimerase family protein | - |
| N0544_RS19325 (3957972) | 3957972..3958754 | + | 783 | WP_000082780.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| N0544_RS19330 (3959057) | 3959057..3959845 | + | 789 | WP_000251798.1 | IclR family transcriptional regulator | - |
| N0544_RS19335 (3959850) | 3959850..3960755 | + | 906 | WP_000714563.1 | dihydrodipicolinate synthase family protein | - |
| N0544_RS19340 (3960766) | 3960766..3962733 | + | 1968 | WP_000116326.1 | xylonate dehydratase YjhG | - |
| N0544_RS19345 (3962840) | 3962840..3964189 | + | 1350 | WP_001128363.1 | GntP family permease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|