MGE detailed information
MGE type: Prophage MGE length: 65319 bp
Accession: NZ_CP103596 Location: 2228441..2293759 Organism: Escherichia coli strain 4848 Replicon: chromosome
Accession: NZ_CP103596 Location: 2228441..2293759 Organism: Escherichia coli strain 4848 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5T19_RS10805 (2224340) | 2224340..2225560 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| M5T19_RS10810 (2225685) | 2225685..2226380 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| M5T19_RS10815 (2226333) | 2226333..2227625 | - | 1293 | WP_217038025.1 | voltage-gated ClC-type chloride channel ClcB | - |
| M5T19_RS10820 (2227784) | 2227784..2228398 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| M5T19_RS10825 (2228441) | 2228441..2229295 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| M5T19_RS10830 (2229297) | 2229297..2229914 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| M5T19_RS10835 (2229925) | 2229925..2232348 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| M5T19_RS10840 (2232409) | 2232409..2234835 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| M5T19_RS10845 (2235034) | 2235034..2235339 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| M5T19_RS10850 (2235447) | 2235447..2236157 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| M5T19_RS10855 (2236160) | 2236160..2236720 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| M5T19_RS10860 (2236755) | 2236755..2237096 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| M5T19_RS10865 (2237231) | 2237231..2237557 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| M5T19_RS10870 (2237763) | 2237763..2238977 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| M5T19_RS10875 (2238989) | 2238989..2240008 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| M5T19_RS10880 (2240196) | 2240196..2241476 | - | 1281 | WP_000876958.1 | Putative defective protein IntQ ; Integrase | Integrase |
| M5T19_RS10885 (2241511) | 2241511..2241762 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| M5T19_RS10890 (2241835) | 2241835..2244306 | - | 2472 | WP_000048342.1 | exonuclease | - |
| M5T19_RS10895 (2244399) | 2244399..2244590 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| M5T19_RS10900 (2244587) | 2244587..2244775 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| M5T19_RS10905 (2245343) | 2245343..2245561 | - | 219 | WP_001171942.1 | protein YdfC | - |
| M5T19_RS10910 (2245591) | 2245591..2245719 | - | 129 | WP_000344964.1 | protein YdfB | - |
| M5T19_RS10915 (2245721) | 2245721..2245876 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| M5T19_RS10920 (2246043) | 2246043..2246450 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| M5T19_RS10925 (2246534) | 2246534..2246764 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| M5T19_RS10930 (2246748) | 2246748..2247269 | + | 522 | WP_000705358.1 | toxin YdaT family protein | - |
| M5T19_RS10935 (2247250) | 2247250..2248215 | + | 966 | WP_000054512.1 | hypothetical protein | - |
| M5T19_RS10940 (2248256) | 2248256..2248678 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| M5T19_RS10945 (2248675) | 2248675..2249164 | + | 490 | Protein_2139 | class I SAM-dependent methyltransferase | - |
| M5T19_RS10950 (2249487) | 2249487..2251026 | - | 1540 | Protein_2140 | IS66 family transposase ISEc22 | Transposase |
| M5T19_RS10955 (2251075) | 2251075..2251422 | - | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| M5T19_RS10960 (2251419) | 2251419..2251823 | - | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| M5T19_RS10965 (2252045) | 2252045..2252466 | + | 422 | Protein_2143 | hypothetical protein | - |
| M5T19_RS10970 (2253122) | 2253122..2254144 | + | 1023 | Protein_2144 | ISNCY family transposase ISCARN112 | Transposase |
| M5T19_RS10975 (2254265) | 2254265..2254414 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| M5T19_RS10980 (2254851) | 2254851..2255183 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| M5T19_RS10985 (2255386) | 2255386..2255691 | - | 306 | WP_001326990.1 | protein YdfV | - |
| M5T19_RS10990 (2255716) | 2255716..2255955 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| M5T19_RS10995 (2255955) | 2255955..2256242 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| M5T19_RS11000 (2256314) | 2256314..2256469 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| M5T19_RS11005 (2256686) | 2256686..2256937 | + | 252 | WP_000980994.1 | protein Rem | - |
| M5T19_RS11010 (2257004) | 2257004..2257282 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| M5T19_RS11015 (2257284) | 2257284..2258333 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| M5T19_RS11020 (2258347) | 2258347..2259099 | + | 753 | WP_001047135.1 | antitermination protein | - |
| M5T19_RS11025 (2259377) | 2259377..2259466 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| M5T19_RS11030 (2259521) | 2259521..2259733 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| M5T19_RS11035 (2260034) | 2260034..2260249 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| M5T19_RS11040 (2260613) | 2260613..2260783 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| M5T19_RS11045 (2261003) | 2261003..2261218 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| M5T19_RS11050 (2261223) | 2261223..2261534 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| M5T19_RS11055 (2261531) | 2261531..2261596 | + | 66 | Protein_2161 | lysozyme | - |
| M5T19_RS11060 (2261663) | 2261663..2262825 | + | 1163 | WP_085947771.1 | IS3 family transposase IS3 | Transposase |
| M5T19_RS11065 (2262838) | 2262838..2263326 | + | 489 | WP_046464162.1 | lysozyme | - |
| M5T19_RS11070 (2263323) | 2263323..2263820 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| M5T19_RS11075 (2264183) | 2264183..2264395 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| M5T19_RS11080 (2264406) | 2264406..2264594 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| M5T19_RS11085 (2264597) | 2264597..2264662 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| M5T19_RS11090 (2264742) | 2264742..2264897 | + | 156 | WP_123377231.1 | protein YnfN | - |
| M5T19_RS11095 (2265069) | 2265069..2265241 | + | 173 | Protein_2169 | addiction module toxin, GnsA/GnsB family | - |
| M5T19_RS11100 (2265393) | 2265393..2265803 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| M5T19_RS11105 (2265861) | 2265861..2266094 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| M5T19_RS11110 (2266483) | 2266483..2267028 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| M5T19_RS11115 (2267003) | 2267003..2268928 | + | 1926 | WP_046464164.1 | phage terminase large subunit family protein | - |
| M5T19_RS11120 (2268925) | 2268925..2269131 | + | 207 | WP_000198149.1 | gpW family protein | - |
| M5T19_RS11125 (2269128) | 2269128..2270729 | + | 1602 | WP_046464165.1 | phage portal protein | - |
| M5T19_RS11130 (2270710) | 2270710..2272029 | + | 1320 | WP_000123305.1 | S49 family peptidase | - |
| M5T19_RS11135 (2272039) | 2272039..2272371 | + | 333 | WP_046464166.1 | head decoration protein | - |
| M5T19_RS11140 (2272427) | 2272427..2273452 | + | 1026 | WP_046464167.1 | major capsid protein | - |
| M5T19_RS11145 (2273494) | 2273494..2273889 | + | 396 | WP_000158880.1 | DNA-packaging protein FI | - |
| M5T19_RS11150 (2273901) | 2273901..2274254 | + | 354 | WP_046464168.1 | head-tail joining protein | - |
| M5T19_RS11155 (2274266) | 2274266..2274844 | + | 579 | WP_046464169.1 | phage tail protein | - |
| M5T19_RS11160 (2274841) | 2274841..2275236 | + | 396 | WP_021526108.1 | phage minor tail U family protein | - |
| M5T19_RS11165 (2275244) | 2275244..2275984 | + | 741 | WP_001349920.1 | phage tail protein | - |
| M5T19_RS11170 (2276000) | 2276000..2276422 | + | 423 | WP_046464170.1 | phage minor tail protein G | - |
| M5T19_RS11175 (2276404) | 2276404..2276838 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| M5T19_RS11180 (2276831) | 2276831..2279392 | + | 2562 | WP_046464171.1 | phage tail tape measure protein | - |
| M5T19_RS11185 (2279389) | 2279389..2279718 | + | 330 | WP_000847347.1 | phage tail protein | - |
| M5T19_RS11190 (2279718) | 2279718..2280416 | + | 699 | WP_001152619.1 | phage minor tail protein L | - |
| M5T19_RS11195 (2280421) | 2280421..2281164 | + | 744 | WP_001441739.1 | C40 family peptidase | - |
| M5T19_RS11200 (2281161) | 2281161..2281733 | + | 573 | WP_001557944.1 | tail assembly protein | - |
| M5T19_RS11205 (2281794) | 2281794..2285291 | + | 3498 | WP_046464172.1 | host specificity protein J | - |
| M5T19_RS11210 (2285361) | 2285361..2285960 | + | 600 | WP_001230375.1 | Attachment invasion locus protein | VF |
| M5T19_RS11215 (2286025) | 2286025..2289099 | + | 3075 | WP_072053404.1 | prophage tail fiber N-terminal domain-containing protein | - |
| M5T19_RS11220 (2289099) | 2289099..2289674 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| M5T19_RS11225 (2289772) | 2289772..2290362 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| M5T19_RS11230 (2290679) | 2290679..2290912 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| M5T19_RS11235 (2290981) | 2290981..2291094 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| M5T19_RS11240 (2291787) | 2291787..2292484 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| M5T19_RS11245 (2292500) | 2292500..2293759 | + | 1260 | Protein_2199 | MHS family MFS transporter YdfJ | - |
| M5T19_RS11250 (2293848) | 2293848..2295308 | + | 1461 | WP_217038108.1 | mannitol dehydrogenase family protein | - |
| M5T19_RS11255 (2295343) | 2295343..2295546 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| M5T19_RS11260 (2295723) | 2295723..2296409 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| M5T19_RS11265 (2296498) | 2296498..2297244 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|