MGE detailed information
MGE type: Prophage MGE length: 58670 bp
Accession: NZ_CP103515 Location: 2241035..2299704 Organism: Escherichia coli strain 5444 Replicon: chromosome
Accession: NZ_CP103515 Location: 2241035..2299704 Organism: Escherichia coli strain 5444 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5S96_RS10850 (2237284) | 2237284..2239710 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| M5S96_RS10855 (2239909) | 2239909..2240214 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| M5S96_RS10860 (2240322) | 2240322..2241032 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| M5S96_RS10865 (2241035) | 2241035..2241595 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| M5S96_RS10870 (2241630) | 2241630..2241971 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| M5S96_RS10875 (2242106) | 2242106..2242432 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| M5S96_RS10880 (2242638) | 2242638..2243852 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| M5S96_RS10885 (2243864) | 2243864..2244883 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| M5S96_RS10890 (2245071) | 2245071..2246351 | - | 1281 | WP_000876958.1 | Putative defective protein IntQ ; Integrase | Integrase |
| M5S96_RS10895 (2246386) | 2246386..2246637 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| M5S96_RS10900 (2246710) | 2246710..2249181 | - | 2472 | WP_000048342.1 | exonuclease | - |
| M5S96_RS10905 (2249274) | 2249274..2249465 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| M5S96_RS10910 (2249462) | 2249462..2249650 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| M5S96_RS10915 (2250218) | 2250218..2250436 | - | 219 | WP_001171942.1 | protein YdfC | - |
| M5S96_RS10920 (2250466) | 2250466..2250594 | - | 129 | WP_000344964.1 | protein YdfB | - |
| M5S96_RS10925 (2250596) | 2250596..2250751 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| M5S96_RS10930 (2250918) | 2250918..2251325 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| M5S96_RS10935 (2251409) | 2251409..2251639 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| M5S96_RS10940 (2251623) | 2251623..2252144 | + | 522 | WP_000705358.1 | toxin YdaT family protein | - |
| M5S96_RS10945 (2252125) | 2252125..2253090 | + | 966 | WP_000054512.1 | hypothetical protein | - |
| M5S96_RS10950 (2253131) | 2253131..2253553 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| M5S96_RS10955 (2253550) | 2253550..2254039 | + | 490 | Protein_2142 | class I SAM-dependent methyltransferase | - |
| M5S96_RS10960 (2254422) | 2254422..2255961 | - | 1540 | Protein_2143 | IS66 family transposase ISEc22 | Transposase |
| M5S96_RS10965 (2256010) | 2256010..2256357 | - | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| M5S96_RS10970 (2256354) | 2256354..2256758 | - | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| M5S96_RS10975 (2256980) | 2256980..2257401 | + | 422 | Protein_2146 | hypothetical protein | - |
| M5S96_RS10980 (2258057) | 2258057..2259079 | + | 1023 | Protein_2147 | ISNCY family transposase ISCARN112 | Transposase |
| M5S96_RS10985 (2259200) | 2259200..2259349 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| M5S96_RS10990 (2259786) | 2259786..2260118 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| M5S96_RS10995 (2260321) | 2260321..2260626 | - | 306 | WP_001326990.1 | protein YdfV | - |
| M5S96_RS11000 (2260651) | 2260651..2260890 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| M5S96_RS11005 (2260890) | 2260890..2261177 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| M5S96_RS11010 (2261249) | 2261249..2261404 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| M5S96_RS11015 (2261621) | 2261621..2261872 | + | 252 | WP_000980994.1 | protein Rem | - |
| M5S96_RS11020 (2261939) | 2261939..2262217 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| M5S96_RS11025 (2262219) | 2262219..2263268 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| M5S96_RS11030 (2263282) | 2263282..2264034 | + | 753 | WP_001047135.1 | antitermination protein | - |
| M5S96_RS11035 (2264312) | 2264312..2264401 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| M5S96_RS11040 (2264456) | 2264456..2264668 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| M5S96_RS11045 (2264969) | 2264969..2265184 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| M5S96_RS11050 (2265548) | 2265548..2265718 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| M5S96_RS11055 (2265938) | 2265938..2266153 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| M5S96_RS11060 (2266158) | 2266158..2266469 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| M5S96_RS11065 (2266466) | 2266466..2266531 | + | 66 | Protein_2164 | lysozyme | - |
| M5S96_RS11070 (2266598) | 2266598..2267760 | + | 1163 | WP_085947771.1 | IS3 family transposase IS3 | Transposase |
| M5S96_RS11075 (2267773) | 2267773..2268261 | + | 489 | WP_046464162.1 | lysozyme | - |
| M5S96_RS11080 (2268258) | 2268258..2268755 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| M5S96_RS11085 (2269118) | 2269118..2269330 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| M5S96_RS11090 (2269341) | 2269341..2269529 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| M5S96_RS11095 (2269532) | 2269532..2269597 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| M5S96_RS11100 (2269677) | 2269677..2269832 | + | 156 | WP_123377231.1 | protein YnfN | - |
| M5S96_RS11105 (2270004) | 2270004..2270176 | + | 173 | Protein_2172 | addiction module toxin, GnsA/GnsB family | - |
| M5S96_RS11110 (2270328) | 2270328..2270738 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| M5S96_RS11115 (2270796) | 2270796..2271029 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| M5S96_RS11120 (2271418) | 2271418..2271963 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| M5S96_RS11125 (2271938) | 2271938..2273863 | + | 1926 | WP_046464164.1 | phage terminase large subunit family protein | - |
| M5S96_RS11130 (2273860) | 2273860..2274066 | + | 207 | WP_000198149.1 | gpW family protein | - |
| M5S96_RS11135 (2274063) | 2274063..2275664 | + | 1602 | WP_046464165.1 | phage portal protein | - |
| M5S96_RS11140 (2275645) | 2275645..2276964 | + | 1320 | WP_000123305.1 | S49 family peptidase | - |
| M5S96_RS11145 (2276974) | 2276974..2277306 | + | 333 | WP_046464166.1 | head decoration protein | - |
| M5S96_RS11150 (2277362) | 2277362..2278387 | + | 1026 | WP_046464167.1 | major capsid protein | - |
| M5S96_RS11155 (2278429) | 2278429..2278824 | + | 396 | WP_000158880.1 | DNA-packaging protein FI | - |
| M5S96_RS11160 (2278836) | 2278836..2279189 | + | 354 | WP_046464168.1 | head-tail joining protein | - |
| M5S96_RS11165 (2279201) | 2279201..2279779 | + | 579 | WP_046464169.1 | phage tail protein | - |
| M5S96_RS11170 (2279776) | 2279776..2280171 | + | 396 | WP_021526108.1 | phage minor tail U family protein | - |
| M5S96_RS11175 (2280179) | 2280179..2280919 | + | 741 | WP_001349920.1 | phage tail protein | - |
| M5S96_RS11180 (2280935) | 2280935..2281357 | + | 423 | WP_259430656.1 | phage minor tail protein G | - |
| M5S96_RS11185 (2281339) | 2281339..2281773 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| M5S96_RS11190 (2281766) | 2281766..2284327 | + | 2562 | WP_046464171.1 | phage tail tape measure protein | - |
| M5S96_RS11195 (2284324) | 2284324..2284653 | + | 330 | WP_000847347.1 | phage tail protein | - |
| M5S96_RS11200 (2284653) | 2284653..2285351 | + | 699 | WP_001152619.1 | phage minor tail protein L | - |
| M5S96_RS11205 (2285356) | 2285356..2286099 | + | 744 | WP_001441739.1 | C40 family peptidase | - |
| M5S96_RS11210 (2286096) | 2286096..2286668 | + | 573 | WP_001557944.1 | tail assembly protein | - |
| M5S96_RS11215 (2286729) | 2286729..2290226 | + | 3498 | WP_046464172.1 | host specificity protein J | - |
| M5S96_RS11220 (2290296) | 2290296..2290895 | + | 600 | WP_001230375.1 | Attachment invasion locus protein | VF |
| M5S96_RS11225 (2290960) | 2290960..2294034 | + | 3075 | WP_072053404.1 | prophage tail fiber N-terminal domain-containing protein | - |
| M5S96_RS11230 (2294034) | 2294034..2294609 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| M5S96_RS11235 (2294707) | 2294707..2295297 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| M5S96_RS11240 (2295614) | 2295614..2295847 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| M5S96_RS11245 (2295916) | 2295916..2296029 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| M5S96_RS11250 (2296550) | 2296550..2297917 | + | 1368 | Protein_2201 | MHS family MFS transporter | - |
| M5S96_RS11255 (2298006) | 2298006..2299466 | + | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| M5S96_RS11260 (2299501) | 2299501..2299704 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| M5S96_RS11265 (2299881) | 2299881..2300567 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| M5S96_RS11270 (2300656) | 2300656..2301402 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| M5S96_RS11275 (2301539) | 2301539..2303584 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| M5S96_RS11280 (2303628) | 2303628..2304146 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|