MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 132942 bp
Accession: NZ_CP100146 Location: 1..132942 Organism: Burkholderia glumae strain BGR39S Replicon: plasmid p39s1p
Accession: NZ_CP100146 Location: 1..132942 Organism: Burkholderia glumae strain BGR39S Replicon: plasmid p39s1p
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIV98_RS29345 | 101..772 | + | 672 | WP_012734035.1 | AAA family ATPase | - |
| NIV98_RS29350 | 772..1737 | + | 966 | WP_012734036.1 | ParB/RepB/Spo0J family partition protein | - |
| NIV98_RS29355 | 2492..3349 | + | 858 | WP_012734037.1 | plasmid replication initiator TrfA | - |
| NIV98_RS29360 | 3613..4869 | + | 1257 | Protein_3 | IS21 family transposase ISAlisp1 | Transposase |
| NIV98_RS29365 | 4937..5803 | - | 867 | WP_012732871.1 | IS21 family transposase ISBcen28 | Transposase |
| NIV98_RS29370 | 5800..7056 | - | 1257 | WP_012734039.1 | IS21 family transposase ISBcen28 | Transposase |
| NIV98_RS29375 | 7182..7436 | + | 255 | Protein_6 | IS21 family transposase ISCsp4 | Transposase |
| NIV98_RS29380 | 7429..8184 | + | 756 | WP_012734041.1 | IS21 family transposase ISPa65 | Transposase |
| NIV98_RS29385 | 8215..9801 | - | 1587 | WP_012732733.1 | IS66 family transposase ISBmu30 | Transposase |
| NIV98_RS29390 | 9901..10254 | - | 354 | WP_012732734.1 | IS66 family transposase ISBmu30 | Transposase |
| NIV98_RS29395 | 10254..10709 | - | 456 | WP_012732735.1 | IS66 family transposase ISRtr5 | Transposase |
| NIV98_RS29400 | 11541..11969 | - | 429 | WP_012734042.1 | type II toxin-antitoxin system VapC family toxin | - |
| NIV98_RS29405 | 11969..12226 | - | 258 | WP_012734043.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| NIV98_RS29410 | 12319..14589 | - | 2271 | WP_257739417.1 | IS91 family transposase ISAzo26 | Transposase |
| NIV98_RS29415 | 14660..15355 | - | 696 | WP_257739418.1 | hypothetical protein | - |
| NIV98_RS29420 | 15675..16208 | - | 534 | WP_148271068.1 | hypothetical protein | - |
| NIV98_RS29425 | 16531..17340 | - | 810 | Protein_16 | IS110 family transposase IS884 | Transposase |
| NIV98_RS29430 | 17528..18175 | - | 648 | Protein_17 | IS6 family transposase ISDge13 | Transposase |
| NIV98_RS29435 | 18825..18826 | - | 2 | WP_088499501.1 | IS5 family transposase IS1421 | Transposase |
| NIV98_RS29440 | 19830..23264 | + | 3435 | WP_012734047.1 | S-layer family protein | - |
| NIV98_RS29445 | 23737..25875 | + | 2139 | WP_012734048.1 | Toxin RTX-I translocation ATP-binding protein | VF |
| NIV98_RS29450 | 25880..27298 | + | 1419 | WP_012734049.1 | Hemolysin secretion protein D, chromosomal | VF |
| NIV98_RS29455 | 27288..28739 | + | 1452 | WP_012734050.1 | Outer membrane protein TolC | VF |
| NIV98_RS29460 | 28917..29132 | + | 216 | WP_237711043.1 | IS66 family transposase ISRm2 | Transposase |
| NIV98_RS29465 | 29122..30240 | - | 1119 | Protein_24 | IS66 family transposase ISAeh1 | Transposase |
| NIV98_RS29470 | 30267..31823 | - | 1557 | WP_012732752.1 | IS66 family transposase ISAeh1 | Transposase |
| NIV98_RS29475 | 31855..32205 | - | 351 | WP_012732753.1 | IS66 family transposase ISBmu30 | Transposase |
| NIV98_RS29480 | 32181..32684 | - | 504 | WP_012732754.1 | IS66 family transposase ISRtr5 | Transposase |
| NIV98_RS32025 | 32721..33659 | + | 939 | WP_017433349.1 | hypothetical protein | VF |
| NIV98_RS29490 | 33787..34513 | - | 727 | Protein_29 | IS6 family transposase | - |
| NIV98_RS29495 | 34529..34927 | - | 399 | WP_012734052.1 | nuclear transport factor 2 family protein | - |
| NIV98_RS29500 | 35009..35950 | + | 942 | WP_012734053.1 | Glycine cleavage system transcriptional activator | VF |
| NIV98_RS29505 | 35953..36165 | + | 213 | WP_017424862.1 | hypothetical protein | - |
| NIV98_RS29510 | 36932..38170 | - | 1239 | WP_045678675.1 | FAD-dependent monooxygenase | - |
| NIV98_RS29515 | 38898..39749 | - | 852 | WP_012734056.1 | hypothetical protein | VF |
| NIV98_RS29520 | 39976..40395 | + | 420 | WP_012734057.1 | hypothetical protein | - |
| NIV98_RS29525 | 40703..41907 | + | 1205 | WP_085962364.1 | IS3 family transposase ISBugl1 | Transposase |
| NIV98_RS29530 | 42009..43246 | + | 1238 | WP_085962446.1 | IS3 family transposase IS1417 | Transposase |
| NIV98_RS29535 | 43278..43565 | + | 288 | Protein_38 | IS21 family transposase ISBmu3 | Transposase |
| NIV98_RS29540 | 43645..44691 | - | 1047 | WP_012734061.1 | IS481 family transposase IS1419 | Transposase |
| NIV98_RS29545 | 45404..45598 | - | 195 | WP_124837731.1 | hypothetical protein | - |
| NIV98_RS29550 | 45668..45970 | - | 303 | WP_127913981.1 | hypothetical protein | - |
| NIV98_RS29555 | 46034..46276 | - | 243 | WP_012734062.1 | hypothetical protein | - |
| NIV98_RS29560 | 46289..46552 | - | 264 | WP_017433216.1 | hypothetical protein | - |
| NIV98_RS29565 | 46564..46884 | - | 321 | WP_012734063.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| NIV98_RS29570 | 46878..47126 | - | 249 | WP_012734064.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| NIV98_RS29575 | 47238..47909 | - | 672 | WP_012734065.1 | site-specific integrase | - |
| NIV98_RS29580 | 48034..48324 | - | 291 | WP_017425259.1 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| NIV98_RS29585 | 48364..49917 | - | 1554 | WP_102952664.1 | IS91 family transposase ISAzo26 | Transposase |
| NIV98_RS29590 | 50914..51597 | + | 684 | WP_012734068.1 | Adenylyl-sulfate kinase | VF |
| NIV98_RS29595 | 51670..52485 | + | 816 | WP_035976812.1 | sulfotransferase | - |
| NIV98_RS29600 | 52601..52867 | - | 267 | Protein_51 | IS1182 family transposase ISThsp18 | Transposase |
| NIV98_RS29605 | 53017..54312 | + | 1296 | WP_012734070.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
| NIV98_RS29610 | 54671..55690 | - | 1020 | WP_012734071.1 | IS110 family transposase IS884 | Transposase |
| NIV98_RS29615 | 55893..56710 | + | 818 | WP_085962447.1 | IS5-like element ISBugl2 family transposase | - |
| NIV98_RS29620 | 57010..57606 | + | 597 | WP_017432949.1 | HD-GYP domain-containing protein | - |
| NIV98_RS29625 | 57902..59000 | + | 1099 | Protein_56 | tyrosine-type recombinase/integrase | - |
| NIV98_RS29630 | 59124..60707 | - | 1584 | WP_012732724.1 | hypothetical protein | VF |
| NIV98_RS29635 | 61190..61534 | + | 345 | WP_017432531.1 | hypothetical protein | - |
| NIV98_RS29640 | 61574..63271 | + | 1698 | WP_012732723.1 | hypothetical protein | VF |
| NIV98_RS29645 | 63256..65172 | + | 1917 | WP_276584764.1 | hypothetical protein | VF |
| NIV98_RS29650 | 65391..65879 | + | 489 | WP_080569430.1 | hypothetical protein | - |
| NIV98_RS29655 | 66206..66587 | - | 382 | Protein_62 | transposase | - |
| NIV98_RS29660 | 66718..67535 | + | 818 | WP_085962346.1 | IS5-like element ISBugl2 family transposase | - |
| NIV98_RS32030 | 68353..69912 | + | 1560 | WP_012734076.1 | Aerotaxis receptor | VF |
| NIV98_RS29675 | 70012..70711 | + | 700 | Protein_65 | IS3 family transposase | - |
| NIV98_RS29680 | 70774..71277 | + | 504 | WP_012734077.1 | IS66 family transposase ISRtr5 | Transposase |
| NIV98_RS29685 | 71253..71603 | + | 351 | WP_012732753.1 | IS66 family transposase ISBmu30 | Transposase |
| NIV98_RS29690 | 71635..73191 | + | 1557 | WP_012732752.1 | IS66 family transposase ISAeh1 | Transposase |
| NIV98_RS29695 | 73218..73550 | + | 333 | Protein_69 | IS3 family transposase IS1416 | Transposase |
| NIV98_RS29700 | 73582..76116 | - | 2535 | WP_158335140.1 | Sensor histidine kinase RcsC | VF |
| NIV98_RS29705 | 76266..77045 | - | 780 | WP_012734079.1 | Sensor histidine kinase RcsC | VF |
| NIV98_RS29710 | 77265..78002 | - | 738 | WP_017423070.1 | Regulator of RpoS | VF |
| NIV98_RS29715 | 78217..79020 | + | 804 | Protein_73 | IS5 family transposase | - |
| NIV98_RS29725 | 80562..82049 | + | 1488 | WP_124837819.1 | hypothetical protein | - |
| NIV98_RS29730 | 82145..83992 | + | 1848 | WP_012734082.1 | clostripain-related cysteine peptidase | - |
| NIV98_RS29735 | 84171..84976 | + | 806 | WP_085962449.1 | IS5 family transposase IS1421 | Transposase |
| NIV98_RS29740 | 84951..85130 | - | 180 | Protein_78 | hypothetical protein | - |
| NIV98_RS29745 | 85252..85783 | + | 532 | Protein_79 | IS3 family transposase ISBvi3 | Transposase |
| NIV98_RS29750 | 85846..85986 | + | 141 | WP_080569432.1 | integrase | - |
| NIV98_RS29755 | 86245..86535 | - | 291 | WP_230674603.1 | DDE-type integrase/transposase/recombinase | - |
| NIV98_RS29760 | 86728..87015 | - | 288 | WP_017924497.1 | hypothetical protein | - |
| NIV98_RS29765 | 87213..87713 | - | 501 | WP_012734085.1 | hypothetical protein | VF |
| NIV98_RS29770 | 88073..89620 | - | 1548 | WP_012734086.1 | Methyl-accepting chemotaxis protein I | VF |
| NIV98_RS29775 | 89926..90547 | - | 622 | Protein_85 | DDE-type integrase/transposase/recombinase | - |
| NIV98_RS29780 | 90683..91342 | - | 660 | WP_012734087.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| NIV98_RS29785 | 91445..92227 | + | 783 | WP_012734088.1 | helix-turn-helix transcriptional regulator | - |
| NIV98_RS29795 | 94045..94299 | + | 255 | WP_012734091.1 | antitoxin | - |
| NIV98_RS29800 | 94290..94700 | + | 411 | WP_012734092.1 | type II toxin-antitoxin system VapC family toxin | - |
| NIV98_RS29805 | 94763..95080 | + | 318 | WP_043308427.1 | hypothetical protein | - |
| NIV98_RS29810 | 95115..95495 | + | 381 | WP_012734093.1 | hypothetical protein | - |
| NIV98_RS29815 | 95492..97333 | + | 1842 | WP_012734094.1 | site-specific integrase | - |
| NIV98_RS29820 | 97460..97771 | + | 312 | WP_127913983.1 | hypothetical protein | - |
| NIV98_RS29825 | 98408..98617 | + | 210 | WP_042968082.1 | hypothetical protein | - |
| NIV98_RS29830 | 99498..99803 | + | 306 | WP_012734095.1 | helix-turn-helix transcriptional regulator | - |
| NIV98_RS29835 | 100150..100755 | + | 606 | WP_158335139.1 | hypothetical protein | - |
| NIV98_RS29840 | 101019..101798 | + | 780 | WP_043308431.1 | hypothetical protein | - |
| NIV98_RS29845 | 101929..102297 | + | 369 | WP_045678674.1 | hypothetical protein | - |
| NIV98_RS29850 | 102340..102543 | + | 204 | Protein_100 | IS66 family transposase ISRm2 | Transposase |
| NIV98_RS29855 | 102603..103106 | + | 504 | WP_012732754.1 | IS66 family transposase ISRtr5 | Transposase |
| NIV98_RS29860 | 103082..103432 | + | 351 | WP_012732753.1 | IS66 family transposase ISBmu30 | Transposase |
| NIV98_RS29865 | 103464..105020 | + | 1557 | WP_012732752.1 | IS66 family transposase ISAeh1 | Transposase |
| NIV98_RS29870 | 105551..105778 | - | 228 | WP_020379863.1 | tyrosine-type recombinase/integrase | - |
| NIV98_RS29875 | 106171..107286 | - | 1116 | WP_012734097.1 | Sigma54-dependent transcriptional activator SfnR | VF |
| NIV98_RS29880 | 107399..108148 | - | 750 | Protein_106 | IS481 family transposase IS1419 | Transposase |
| NIV98_RS29885 | 108235..108690 | + | 456 | WP_012732735.1 | IS66 family transposase ISRtr5 | Transposase |
| NIV98_RS29890 | 108808..109854 | + | 1047 | WP_012734099.1 | IS481 family transposase IS1419 | Transposase |
| NIV98_RS29895 | 109912..110265 | + | 354 | WP_012732734.1 | IS66 family transposase ISBmu30 | Transposase |
| NIV98_RS29900 | 110365..111951 | + | 1587 | WP_012732733.1 | IS66 family transposase ISBmu30 | Transposase |
| NIV98_RS29905 | 112010..112312 | - | 303 | Protein_111 | IS481 family transposase IS1419 | Transposase |
| NIV98_RS29910 | 113214..113837 | + | 624 | WP_045678665.1 | FMN reductase | - |
| NIV98_RS29915 | 113867..114982 | + | 1116 | WP_012734101.1 | dimethyl sulfone monooxygenase SfnG | - |
| NIV98_RS29920 | 115138..115506 | - | 369 | Protein_114 | IS6 family transposase | - |
| NIV98_RS29925 | 115804..116829 | - | 1026 | WP_236702755.1 | thioredoxin | - |
| NIV98_RS29930 | 116799..117041 | - | 243 | WP_236702757.1 | thioredoxin domain-containing protein | - |
| NIV98_RS29935 | 117123..118784 | - | 1662 | WP_232252307.1 | ABC transporter ATP-binding protein/permease | - |
| NIV98_RS29940 | 118892..119314 | - | 423 | WP_012734103.1 | biopolymer transporter ExbD | - |
| NIV98_RS29945 | 119329..120063 | - | 735 | WP_012733849.1 | MotA/TolQ/ExbB proton channel family protein | - |
| NIV98_RS29950 | 120087..120833 | - | 747 | WP_232252306.1 | hypothetical protein | VF |
| NIV98_RS29955 | 120865..123240 | - | 2376 | WP_232252305.1 | TonB-dependent receptor | - |
| NIV98_RS29960 | 123554..124018 | - | 465 | WP_012734106.1 | Lrp/AsnC family transcriptional regulator | - |
| NIV98_RS29965 | 124241..124462 | - | 222 | WP_017433768.1 | hypothetical protein | - |
| NIV98_RS29970 | 124612..124806 | - | 195 | WP_124837685.1 | hypothetical protein | - |
| NIV98_RS29975 | 124865..125215 | - | 351 | WP_012734107.1 | type II toxin-antitoxin system ChpB family toxin | Toxin Detail |
| NIV98_RS29980 | 125209..125460 | - | 252 | WP_012734108.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| NIV98_RS29985 | 125723..126130 | - | 408 | WP_230674618.1 | hypothetical protein | - |
| NIV98_RS29990 | 126233..128068 | - | 1836 | WP_012732711.1 | site-specific integrase | - |
| NIV98_RS29995 | 128071..128412 | - | 342 | WP_012732710.1 | hypothetical protein | - |
| NIV98_RS30000 | 128469..128714 | - | 246 | WP_127913916.1 | hypothetical protein | - |
| NIV98_RS30005 | 128711..128953 | - | 243 | WP_124837682.1 | hypothetical protein | - |
| NIV98_RS30010 | 128967..129251 | - | 285 | WP_017432347.1 | hypothetical protein | - |
| NIV98_RS30015 | 129639..129956 | - | 318 | WP_148271069.1 | hypothetical protein | - |
| NIV98_RS30020 | 130140..130421 | - | 282 | WP_043308454.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| NIV98_RS30025 | 130425..130880 | - | 456 | WP_012734111.1 | hypothetical protein | - |
| NIV98_RS30030 | 131088..131330 | - | 243 | WP_043308436.1 | hypothetical protein | - |
| NIV98_RS30035 | 131490..131792 | - | 303 | WP_012734112.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| NIV98_RS30040 | 131782..132027 | - | 246 | WP_012734113.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| NIV98_RS30045 | 132181..132375 | - | 195 | WP_043308437.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|