MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 204816 bp
Accession: NZ_CP100138 Location: 1..204816 Organism: Burkholderia glumae strain R93 Replicon: plasmid pr931p
Accession: NZ_CP100138 Location: 1..204816 Organism: Burkholderia glumae strain R93 Replicon: plasmid pr931p
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIV78_RS28975 | 101..772 | + | 672 | WP_012734035.1 | AAA family ATPase | - |
| NIV78_RS28980 | 772..1737 | + | 966 | WP_012734036.1 | ParB/RepB/Spo0J family partition protein | - |
| NIV78_RS28985 | 2492..3349 | + | 858 | WP_012734037.1 | plasmid replication initiator TrfA | - |
| NIV78_RS28990 | 5030..5929 | - | 900 | WP_257758098.1 | Crp/Fnr family transcriptional regulator | - |
| NIV78_RS28995 | 6347..7684 | - | 1338 | WP_017432354.1 | DUF1173 domain-containing protein | - |
| NIV78_RS29000 | 7698..8117 | - | 420 | WP_017432355.1 | hypothetical protein | - |
| NIV78_RS29005 | 8114..8767 | - | 654 | WP_012732807.1 | hypothetical protein | - |
| NIV78_RS29010 | 8784..12938 | - | 4155 | WP_257758100.1 | Autotransporter adhesin SadA | VF |
| NIV78_RS29015 | 13063..13686 | - | 624 | WP_012732809.1 | hypothetical protein | - |
| NIV78_RS29020 | 13683..14000 | - | 318 | WP_012732810.1 | hypothetical protein | - |
| NIV78_RS29025 | 13997..14440 | - | 444 | WP_230674406.1 | protein-disulfide reductase DsbD N-terminal domain-containing protein | - |
| NIV78_RS29030 | 14479..14910 | - | 432 | WP_017432893.1 | hypothetical protein | - |
| NIV78_RS29035 | 15067..15465 | - | 399 | WP_012732812.1 | outer membrane protein assembly factor BamE | - |
| NIV78_RS29040 | 15510..15929 | - | 420 | WP_039201912.1 | hypothetical protein | - |
| NIV78_RS29045 | 15940..18036 | - | 2097 | WP_257758101.1 | zeta toxin family protein | - |
| NIV78_RS29050 | 18048..18296 | - | 249 | WP_039201920.1 | hypothetical protein | - |
| NIV78_RS29055 | 18335..18964 | - | 630 | WP_039201915.1 | Phospholipase D | VF |
| NIV78_RS29060 | 19222..19608 | + | 387 | WP_039201916.1 | hypothetical protein | - |
| NIV78_RS29065 | 19646..23080 | - | 3435 | WP_257758102.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| NIV78_RS29070 | 23083..24528 | - | 1446 | WP_012735278.1 | conjugal transfer protein TraH | - |
| NIV78_RS29075 | 24525..25568 | - | 1044 | WP_209954626.1 | hypothetical protein | - |
| NIV78_RS29080 | 25568..26350 | - | 783 | WP_039202638.1 | conjugal transfer protein TraF | - |
| NIV78_RS29085 | 26374..26769 | - | 396 | WP_017432465.1 | hypothetical protein | - |
| NIV78_RS29090 | 26793..27200 | - | 408 | WP_017432466.1 | hypothetical protein | - |
| NIV78_RS29095 | 27197..28462 | - | 1266 | WP_012735282.1 | conjugal transfer protein TraN | - |
| NIV78_RS29100 | 28459..29757 | - | 1299 | WP_012735283.1 | hypothetical protein | - |
| NIV78_RS29105 | 29757..30548 | - | 792 | WP_012735284.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| NIV78_RS29110 | 30545..31522 | - | 978 | WP_176359146.1 | conjugal transfer pilus assembly protein TraU | - |
| NIV78_RS29115 | 31573..32520 | - | 948 | WP_245163860.1 | hypothetical protein | - |
| NIV78_RS29120 | 32587..33225 | - | 639 | WP_039202645.1 | type-F conjugative transfer system protein TraW | - |
| NIV78_RS29125 | 33239..33739 | - | 501 | WP_012735288.1 | S26 family signal peptidase | - |
| NIV78_RS29130 | 33736..34107 | - | 372 | WP_039202647.1 | TrbI F-type domain-containing protein | - |
| NIV78_RS29135 | 34104..36704 | - | 2601 | WP_257758104.1 | type IV secretion system protein TraC | - |
| NIV78_RS29140 | 36718..37416 | - | 699 | WP_017924038.1 | type IV conjugative transfer system lipoprotein TraV | - |
| NIV78_RS29145 | 37419..38327 | - | 909 | WP_230674452.1 | DsbC family protein | - |
| NIV78_RS29150 | 38324..39292 | - | 969 | WP_230674453.1 | phage Gp37/Gp68 family protein | - |
| NIV78_RS29155 | 39420..39866 | - | 447 | WP_017924571.1 | HNH endonuclease | - |
| NIV78_RS29160 | 39863..40951 | - | 1089 | WP_080763626.1 | hypothetical protein | - |
| NIV78_RS29165 | 40944..42281 | - | 1338 | WP_039202662.1 | TrbI/VirB10 family protein | - |
| NIV78_RS29170 | 42274..43014 | - | 741 | WP_012732835.1 | type-F conjugative transfer system secretin TraK | - |
| NIV78_RS29175 | 43011..43622 | - | 612 | WP_039202649.1 | type IV conjugative transfer system protein TraE | - |
| NIV78_RS29180 | 43627..43914 | - | 288 | WP_017923551.1 | type IV conjugative transfer system protein TraL | - |
| NIV78_RS29185 | 43924..44313 | - | 390 | WP_017923552.1 | hypothetical protein | - |
| NIV78_RS29190 | 44896..45387 | - | 492 | WP_012735297.1 | Type IV secretion system protein virB1 | VF |
| NIV78_RS29195 | 45891..46238 | - | 348 | WP_127913918.1 | hypothetical protein | - |
| NIV78_RS29200 | 46410..46865 | - | 456 | WP_012735298.1 | ester cyclase | - |
| NIV78_RS29205 | 46962..48260 | - | 1299 | WP_017432435.1 | MFS transporter | - |
| NIV78_RS29210 | 48453..49340 | + | 888 | WP_230674573.1 | LysR family transcriptional regulator | - |
| NIV78_RS29215 | 49458..54143 | + | 4686 | WP_257758105.1 | Protein RhsC | VF |
| NIV78_RS29220 | 54140..54466 | + | 327 | WP_155297030.1 | hypothetical protein | - |
| NIV78_RS29225 | 54485..54976 | + | 492 | Protein_50 | RHS repeat-associated core domain-containing protein | - |
| NIV78_RS29230 | 54979..55323 | + | 345 | WP_155297029.1 | hypothetical protein | - |
| NIV78_RS29235 | 55384..55665 | + | 282 | WP_155297028.1 | DUF2750 domain-containing protein | - |
| NIV78_RS29240 | 55699..56739 | + | 1041 | WP_039203517.1 | DNA cytosine methyltransferase | - |
| NIV78_RS29245 | 56749..58755 | + | 2007 | WP_080763651.1 | ATP-binding protein | - |
| NIV78_RS29255 | 60221..61174 | + | 954 | WP_039205200.1 | hypothetical protein | - |
| NIV78_RS29260 | 61227..62032 | + | 806 | WP_257758107.1 | IS5 family transposase | - |
| NIV78_RS29265 | 62249..62530 | + | 282 | WP_039204507.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| NIV78_RS29270 | 62527..63021 | + | 495 | WP_039204503.1 | GNAT family N-acetyltransferase | Toxin Detail |
| NIV78_RS29275 | 63114..63584 | + | 471 | WP_080763678.1 | ProQ/FINO family protein | - |
| NIV78_RS29280 | 63673..66594 | - | 2922 | WP_257758109.1 | Multifunctional conjugation protein TraI | Relaxase |
| NIV78_RS29285 | 66604..68670 | - | 2067 | WP_039204005.1 | type IV secretion system DNA-binding domain-containing protein | - |
| NIV78_RS29290 | 68663..69109 | - | 447 | WP_080763665.1 | hypothetical protein | - |
| NIV78_RS29295 | 70256..71032 | - | 777 | WP_257758111.1 | hypothetical protein | - |
| NIV78_RS29300 | 71282..71563 | + | 282 | WP_176359118.1 | hypothetical protein | - |
| NIV78_RS29310 | 71752..71925 | - | 174 | WP_176359117.1 | hypothetical protein | - |
| NIV78_RS29315 | 71980..72357 | - | 378 | WP_257758112.1 | hypothetical protein | - |
| NIV78_RS29320 | 72415..72687 | - | 273 | WP_012732855.1 | hypothetical protein | - |
| NIV78_RS29325 | 72702..72992 | - | 291 | WP_237711056.1 | hypothetical protein | - |
| NIV78_RS29330 | 73787..76015 | - | 2229 | WP_171467043.1 | ParB N-terminal domain-containing protein | - |
| NIV78_RS29335 | 76657..76824 | - | 168 | WP_017433877.1 | hypothetical protein | - |
| NIV78_RS29340 | 77155..77661 | - | 507 | WP_012732858.1 | hypothetical protein | - |
| NIV78_RS29345 | 77686..78339 | - | 654 | WP_012732859.1 | DNA methyltransferase | - |
| NIV78_RS29350 | 79073..79900 | - | 828 | WP_012732860.1 | DUF932 domain-containing protein | - |
| NIV78_RS29355 | 80457..80918 | - | 462 | WP_017922598.1 | hypothetical protein | - |
| NIV78_RS29360 | 80979..81635 | - | 657 | WP_257758114.1 | hypothetical protein | - |
| NIV78_RS29365 | 81701..82180 | - | 480 | WP_042967548.1 | hypothetical protein | - |
| NIV78_RS29370 | 83065..83541 | + | 477 | WP_042967545.1 | hypothetical protein | - |
| NIV78_RS29375 | 83593..84039 | + | 447 | WP_017432684.1 | hypothetical protein | - |
| NIV78_RS29380 | 84173..85321 | - | 1149 | WP_257758115.1 | DUF3560 domain-containing protein | - |
| NIV78_RS29385 | 85783..86481 | + | 699 | WP_045678704.1 | hypothetical protein | - |
| NIV78_RS29390 | 86481..86867 | + | 387 | WP_017922593.1 | hypothetical protein | - |
| NIV78_RS29395 | 87291..87902 | + | 612 | WP_026051557.1 | methyltransferase domain-containing protein | - |
| NIV78_RS29400 | 88024..88566 | + | 543 | WP_080742217.1 | GNAT family N-acetyltransferase | - |
| NIV78_RS29405 | 88926..90392 | + | 1467 | WP_198292469.1 | ISNCY family transposase ISKpn21 | Transposase |
| NIV78_RS29410 | 90808..91854 | + | 1047 | WP_257758116.1 | IS481 family transposase IS1419 | Transposase |
| NIV78_RS29415 | 91903..92004 | - | 102 | Protein_87 | IS3 family transposase | - |
| NIV78_RS29420 | 92140..92364 | + | 225 | WP_153479292.1 | hypothetical protein | - |
| NIV78_RS29425 | 92354..94861 | + | 2508 | WP_257758117.1 | type VI secretion system Vgr family protein | - |
| NIV78_RS29430 | 94914..97667 | + | 2754 | WP_257758118.1 | hypothetical protein | - |
| NIV78_RS29435 | 97674..98378 | + | 705 | WP_080630297.1 | hypothetical protein | - |
| NIV78_RS29440 | 98375..98497 | + | 123 | WP_257758121.1 | hypothetical protein | - |
| NIV78_RS29445 | 98836..100392 | - | 1557 | WP_012732752.1 | IS66 family transposase ISAeh1 | Transposase |
| NIV78_RS29450 | 100424..100774 | - | 351 | WP_012732753.1 | IS66 family transposase ISBmu30 | Transposase |
| NIV78_RS29455 | 100750..101226 | - | 477 | WP_012734051.1 | IS66 family transposase ISRtr5 | Transposase |
| NIV78_RS29460 | 102231..102641 | - | 411 | WP_257758123.1 | hypothetical protein | - |
| NIV78_RS29465 | 103193..103858 | - | 666 | WP_012735319.1 | gamma-mobile-trio protein GmtX | - |
| NIV78_RS29470 | 103855..106461 | - | 2607 | WP_012735320.1 | VPA1269 family protein | - |
| NIV78_RS29475 | 106454..107869 | - | 1416 | WP_012735321.1 | gamma-mobile-trio recombinase GmtY | - |
| NIV78_RS29480 | 107954..109216 | - | 1263 | WP_193373184.1 | MFS transporter | - |
| NIV78_RS29485 | 109167..109931 | - | 765 | WP_012735323.1 | arsenical resistance protein ArsH | - |
| NIV78_RS29490 | 109945..110772 | - | 828 | WP_012735324.1 | arsenic resistance N-acetyltransferase ArsN2 | - |
| NIV78_RS29495 | 110782..111843 | - | 1062 | WP_012735325.1 | ACR3 family arsenite efflux transporter | - |
| NIV78_RS29500 | 111830..112351 | - | 522 | WP_012735326.1 | arsenate reductase ArsC | - |
| NIV78_RS29505 | 112509..112841 | - | 333 | WP_012735327.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| NIV78_RS29510 | 113117..113821 | + | 705 | WP_043308749.1 | translesion DNA synthesis-associated protein ImuA | - |
| NIV78_RS29515 | 113739..115217 | + | 1479 | WP_257758086.1 | DNA polymerase Y family protein | - |
| NIV78_RS29520 | 115224..118373 | + | 3150 | WP_257758087.1 | error-prone DNA polymerase | - |
| NIV78_RS29525 | 118386..118673 | + | 288 | WP_257758088.1 | hypothetical protein | - |
| NIV78_RS29530 | 118695..118850 | - | 156 | WP_257758089.1 | hypothetical protein | - |
| NIV78_RS29535 | 119010..120056 | - | 1047 | Protein_111 | IS481 family transposase IS1419 | Transposase |
| NIV78_RS29540 | 120188..120564 | - | 377 | Protein_112 | IS3 family transposase ISBp1 | Transposase |
| NIV78_RS29545 | 120929..121180 | - | 252 | Protein_113 | IS3 family transposase ISRso16 | Transposase |
| NIV78_RS29550 | 121453..122319 | + | 867 | WP_251107348.1 | thiol:disulfide interchange protein DsbG | - |
| NIV78_RS29555 | 122375..122740 | + | 366 | WP_124837734.1 | hypothetical protein | - |
| NIV78_RS29560 | 123292..125043 | + | 1752 | WP_251107565.1 | Lipid A export ATP-binding/permease protein MsbA | VF |
| NIV78_RS29565 | 125502..126968 | - | 1467 | WP_017923681.1 | Toxin and drug export protein A | VF |
| NIV78_RS29570 | 127040..129034 | - | 1995 | WP_251107347.1 | Macrolide export ATP-binding/permease protein MacB | VF |
| NIV78_RS29575 | 129039..130220 | - | 1182 | WP_017923683.1 | efflux RND transporter periplasmic adaptor subunit | - |
| NIV78_RS29580 | 130620..130775 | - | 156 | Protein_120 | IS481 family transposase | - |
| NIV78_RS29585 | 130854..131651 | - | 798 | WP_012732720.1 | IS21 family transposase ISPa65 | Transposase |
| NIV78_RS29590 | 131679..132051 | - | 373 | Protein_122 | IS21 family transposase ISPa65 | Transposase |
| NIV78_RS29595 | 132401..133928 | + | 1528 | Protein_123 | IS21 family transposase ISBmu3 | Transposase |
| NIV78_RS29600 | 133944..134692 | + | 749 | Protein_124 | IS21 family transposase ISBmu3 | Transposase |
| NIV78_RS29605 | 134805..135869 | - | 1065 | Protein_125 | IS21 family transposase ISAlisp1 | Transposase |
| NIV78_RS29610 | 136068..137315 | - | 1248 | WP_017922441.1 | multidrug effflux MFS transporter | - |
| NIV78_RS29615 | 137496..138098 | - | 603 | WP_251108021.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| NIV78_RS29620 | 138152..142759 | - | 4608 | WP_251108020.1 | Polyketide synthase PksR | VF |
| NIV78_RS29625 | 142789..155229 | - | 12441 | WP_257758090.1 | Polyketide synthase PksJ | VF |
| NIV78_RS29630 | 155309..156250 | - | 942 | WP_017922445.1 | diiron oxygenase | - |
| NIV78_RS29635 | 156260..156889 | - | 630 | WP_251108018.1 | aminodeoxychorismate/anthranilate synthase component II | - |
| NIV78_RS29640 | 156877..158703 | - | 1827 | WP_251108017.1 | aminodeoxychorismate synthase component I | - |
| NIV78_RS29645 | 159291..159581 | + | 291 | WP_251108016.1 | hypothetical protein | - |
| NIV78_RS29650 | 159556..160491 | - | 936 | WP_251108015.1 | hypothetical protein | - |
| NIV78_RS29655 | 160771..161184 | + | 414 | WP_251108029.1 | PAAR domain-containing protein | - |
| NIV78_RS29660 | 161189..161686 | + | 498 | WP_251108014.1 | DUF4123 domain-containing protein | - |
| NIV78_RS29665 | 161679..162146 | + | 468 | WP_251108013.1 | hypothetical protein | - |
| NIV78_RS29670 | 162034..162626 | + | 593 | Protein_138 | restriction endonuclease fold toxin 5 domain-containing protein | - |
| NIV78_RS29675 | 162636..163346 | + | 711 | WP_251108012.1 | Imm52 family immunity protein | - |
| NIV78_RS29680 | 163710..165185 | - | 1476 | WP_257758125.1 | IS66 family transposase ISAeh1 | Transposase |
| NIV78_RS29685 | 165253..166809 | - | 1557 | WP_257756899.1 | IS66 family transposase ISAeh1 | Transposase |
| NIV78_RS29690 | 166841..167191 | - | 351 | WP_257756898.1 | IS66 family transposase ISBmu30 | Transposase |
| NIV78_RS29695 | 167167..167643 | - | 477 | WP_257756897.1 | IS66 family transposase ISRm2 | Transposase |
| NIV78_RS29700 | 167833..168174 | - | 342 | WP_257758091.1 | IS66 family transposase ISBmu30 | Transposase |
| NIV78_RS29705 | 168144..169700 | - | 1557 | WP_012732752.1 | IS66 family transposase ISAeh1 | Transposase |
| NIV78_RS29710 | 169732..170049 | - | 318 | WP_255220049.1 | IS66 family transposase ISBmu30 | Transposase |
| NIV78_RS29720 | 171372..172067 | - | 696 | WP_237657875.1 | hypothetical protein | - |
| NIV78_RS29725 | 172085..172543 | - | 459 | WP_161522096.1 | hypothetical protein | - |
| NIV78_RS29730 | 172613..172837 | - | 225 | WP_161522097.1 | hypothetical protein | - |
| NIV78_RS29735 | 172964..173740 | - | 777 | WP_161522098.1 | hypothetical protein | - |
| NIV78_RS29740 | 173830..174099 | - | 270 | WP_161522099.1 | hypothetical protein | - |
| NIV78_RS29745 | 174333..174665 | - | 333 | WP_161522100.1 | hypothetical protein | - |
| NIV78_RS29750 | 174870..175133 | - | 264 | WP_161522101.1 | hypothetical protein | - |
| NIV78_RS29755 | 175182..175613 | - | 432 | WP_161522102.1 | hypothetical protein | - |
| NIV78_RS29760 | 175665..175943 | - | 279 | WP_161522103.1 | hypothetical protein | - |
| NIV78_RS29765 | 175950..176192 | - | 243 | WP_161522115.1 | hypothetical protein | - |
| NIV78_RS29770 | 176617..178440 | - | 1824 | WP_161522104.1 | IS91 family transposase ISWz1 | Transposase |
| NIV78_RS29775 | 178437..178613 | - | 177 | WP_174525167.1 | hypothetical protein | - |
| NIV78_RS29780 | 178675..179541 | - | 867 | WP_012732871.1 | IS21 family transposase ISBcen28 | Transposase |
| NIV78_RS29785 | 179538..180794 | - | 1257 | WP_012734039.1 | IS21 family transposase ISBcen28 | Transposase |
| NIV78_RS29790 | 180920..181618 | + | 699 | Protein_162 | error-prone DNA polymerase | - |
| NIV78_RS29795 | 181631..181918 | + | 288 | WP_153479215.1 | hypothetical protein | - |
| NIV78_RS29800 | 182019..182261 | - | 243 | WP_012734062.1 | hypothetical protein | - |
| NIV78_RS29805 | 182277..182645 | - | 369 | WP_153479214.1 | hypothetical protein | - |
| NIV78_RS29810 | 182656..183090 | - | 435 | WP_237657892.1 | hypothetical protein | - |
| NIV78_RS29815 | 183844..184143 | - | 300 | WP_251107943.1 | hypothetical protein | - |
| NIV78_RS29820 | 184525..186240 | - | 1716 | WP_153479211.1 | Methyl-accepting chemotaxis protein I | VF |
| NIV78_RS30825 | 186417..187988 | - | 1572 | WP_275990976.1 | Methyl-accepting chemotaxis protein I | VF |
| NIV78_RS29830 | 188082..188879 | - | 798 | WP_012732720.1 | IS21 family transposase ISPa65 | Transposase |
| NIV78_RS29835 | 188872..190377 | - | 1506 | WP_012732721.1 | IS21 family transposase ISAlisp1 | Transposase |
| NIV78_RS29840 | 190491..190871 | - | 381 | Protein_172 | low affinity iron permease family protein | - |
| NIV78_RS29845 | 191157..191600 | - | 444 | WP_153479209.1 | DNA-binding response regulator MtrA | VF |
| NIV78_RS29850 | 192108..192518 | + | 411 | WP_012732719.1 | manganese catalase family protein | - |
| NIV78_RS29855 | 192451..192651 | - | 201 | Protein_175 | DUF892 family protein | - |
| NIV78_RS29860 | 192889..194241 | + | 1353 | WP_012732718.1 | Luminescence regulatory protein LuxO | VF |
| NIV78_RS29865 | 194611..195339 | - | 729 | WP_257758094.1 | IS6 family transposase ISDge13 | Transposase |
| NIV78_RS29870 | 195385..195870 | - | 486 | WP_257758126.1 | hypothetical protein | VF |
| NIV78_RS29875 | 195980..196657 | - | 678 | WP_257758095.1 | hypothetical protein | - |
| NIV78_RS29880 | 197045..197850 | - | 806 | Protein_180 | IS5 family transposase | - |
| NIV78_RS29885 | 198031..198438 | - | 408 | WP_232252319.1 | hypothetical protein | - |
| NIV78_RS29890 | 198541..200376 | - | 1836 | WP_257758127.1 | site-specific integrase | - |
| NIV78_RS29895 | 200379..200720 | - | 342 | WP_257758096.1 | hypothetical protein | - |
| NIV78_RS29900 | 200777..201022 | - | 246 | WP_127913916.1 | hypothetical protein | - |
| NIV78_RS29905 | 201040..201285 | + | 246 | WP_257758097.1 | hypothetical protein | - |
| NIV78_RS29910 | 201274..201558 | - | 285 | WP_017432347.1 | hypothetical protein | - |
| NIV78_RS29915 | 201951..202148 | - | 198 | WP_127840952.1 | hypothetical protein | - |
| NIV78_RS29920 | 202309..202842 | - | 534 | WP_017924249.1 | RES family NAD+ phosphorylase | - |
| NIV78_RS29925 | 202839..203264 | - | 426 | WP_017924250.1 | DUF2384 domain-containing protein | - |
| NIV78_RS29930 | 203411..203596 | - | 186 | WP_171467077.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|