MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 115590 bp
Accession: NZ_CP098720 Location: 1..115590 Organism: Yersinia ruckeri strain NVI-11267 Replicon: plasmid pYR4
Accession: NZ_CP098720 Location: 1..115590 Organism: Yersinia ruckeri strain NVI-11267 Replicon: plasmid pYR4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND445_RS17445 (ND445_17445) | 254..1177 | - | 924 | WP_126940188.1 | DUF2971 domain-containing protein | - |
| ND445_RS17450 (ND445_17450) | 1701..2657 | + | 957 | WP_126940187.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ND445_RS17455 (ND445_17455) | 2858..3139 | - | 282 | WP_126940186.1 | ribbon-helix-helix domain-containing protein | - |
| ND445_RS17460 (ND445_17460) | 3173..3826 | - | 654 | WP_126940185.1 | AAA family ATPase | - |
| ND445_RS17465 (ND445_17465) | 4130..5104 | + | 975 | WP_126940201.1 | plasmid segregation protein ParM | - |
| ND445_RS17470 (ND445_17470) | 5106..5507 | + | 402 | WP_162486789.1 | plasmid partitioning/stability family protein | - |
| ND445_RS17475 (ND445_17475) | 5846..6316 | + | 471 | WP_126940183.1 | hypothetical protein | - |
| ND445_RS17480 (ND445_17480) | 6598..7377 | + | 780 | WP_126940182.1 | hypothetical protein | - |
| ND445_RS17485 (ND445_17485) | 7769..8275 | + | 507 | WP_126940180.1 | antirestriction protein ArdA | - |
| ND445_RS17490 (ND445_17490) | 8318..8518 | + | 201 | WP_126940179.1 | hypothetical protein | - |
| ND445_RS17495 (ND445_17495) | 9272..9628 | + | 357 | WP_126940178.1 | hypothetical protein | - |
| ND445_RS17500 (ND445_17500) | 9714..9860 | + | 147 | WP_126940177.1 | succinate dehydrogenase flavoprotein subunit | - |
| ND445_RS17505 (ND445_17505) | 9904..10716 | + | 813 | WP_238692894.1 | N-6 DNA methylase | - |
| ND445_RS17510 (ND445_17510) | 11475..11834 | + | 360 | WP_126940175.1 | DUF3085 domain-containing protein | - |
| ND445_RS17515 (ND445_17515) | 11831..12328 | + | 498 | WP_126940174.1 | hypothetical protein | - |
| ND445_RS17520 (ND445_17520) | 12336..12569 | - | 234 | WP_038251853.1 | hypothetical protein | - |
| ND445_RS17525 (ND445_17525) | 12721..13044 | + | 324 | WP_038251855.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ND445_RS17530 (ND445_17530) | 13090..13386 | + | 297 | WP_004720859.1 | NadS family protein | Antitoxin Detail |
| ND445_RS17535 (ND445_17535) | 13874..14687 | + | 814 | Protein_19 | DUF932 domain-containing protein | - |
| ND445_RS17540 (ND445_17540) | 14963..15079 | + | 117 | WP_220272310.1 | hypothetical protein | - |
| ND445_RS17545 (ND445_17545) | 15226..15549 | - | 324 | WP_004720850.1 | hypothetical protein | - |
| ND445_RS17550 (ND445_17550) | 15818..16162 | + | 345 | WP_004720848.1 | plasmid mobilization protein MobA | - |
| ND445_RS17555 (ND445_17555) | 16164..18089 | + | 1926 | WP_004720847.1 | hypothetical protein | Relaxase |
| ND445_RS17560 (ND445_17560) | 18386..19435 | + | 1050 | WP_126940173.1 | Abi family protein | - |
| ND445_RS17565 (ND445_17565) | 19815..22517 | + | 2703 | WP_126940172.1 | DNA repair protein | - |
| ND445_RS17570 (ND445_17570) | 22618..23154 | - | 537 | WP_126940171.1 | Phospholipase D | VF |
| ND445_RS17575 (ND445_17575) | 23241..25541 | - | 2301 | WP_126940170.1 | hypothetical protein | VF |
| ND445_RS17580 (ND445_17580) | 25552..26616 | - | 1065 | WP_126940169.1 | DsbC family protein | - |
| ND445_RS17585 (ND445_17585) | 26621..27904 | - | 1284 | WP_004720838.1 | hypothetical protein | - |
| ND445_RS17590 (ND445_17590) | 28000..28680 | - | 681 | WP_038251860.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| ND445_RS17595 (ND445_17595) | 28702..28920 | - | 219 | WP_038251862.1 | plasmid stabilization protein | - |
| ND445_RS17600 (ND445_17600) | 29026..31167 | - | 2142 | WP_126940168.1 | DotA/TraY family protein | - |
| ND445_RS17605 (ND445_17605) | 31234..31839 | - | 606 | WP_126940167.1 | conjugal transfer protein TraX | - |
| ND445_RS17610 (ND445_17610) | 31839..33032 | - | 1194 | WP_126940166.1 | conjugal transfer protein TraW | - |
| ND445_RS17615 (ND445_17615) | 33046..36123 | - | 3078 | WP_038251865.1 | conjugal transfer protein | - |
| ND445_RS17620 (ND445_17620) | 36146..37081 | - | 936 | WP_267257527.1 | hypothetical protein | - |
| ND445_RS17625 (ND445_17625) | 37163..37546 | - | 384 | WP_004720828.1 | hypothetical protein | - |
| ND445_RS17630 (ND445_17630) | 37571..38098 | - | 528 | WP_038251868.1 | conjugal transfer protein TraQ | - |
| ND445_RS17635 (ND445_17635) | 38098..38853 | - | 756 | WP_049688151.1 | hypothetical protein | - |
| ND445_RS17640 (ND445_17640) | 38865..40118 | - | 1254 | WP_126940164.1 | conjugal transfer protein TraO | - |
| ND445_RS17645 (ND445_17645) | 40121..41116 | - | 996 | WP_162486788.1 | hypothetical protein | VF |
| ND445_RS17650 (ND445_17650) | 41135..41857 | - | 723 | WP_004720818.1 | DotI/IcmL/TraM family protein | - |
| ND445_RS17655 (ND445_17655) | 41874..42332 | - | 459 | WP_238692899.1 | hypothetical protein | - |
| ND445_RS17660 (ND445_17660) | 42337..45690 | - | 3354 | WP_126940163.1 | DUF5710 domain-containing protein | - |
| ND445_RS17665 (ND445_17665) | 45706..45966 | - | 261 | WP_038251874.1 | IcmT/TraK family protein | - |
| ND445_RS17670 (ND445_17670) | 45963..47117 | - | 1155 | WP_126940162.1 | Twitching mobility protein | VF |
| ND445_RS17675 (ND445_17675) | 47117..47905 | - | 789 | WP_038251876.1 | hypothetical protein | VF |
| ND445_RS17680 (ND445_17680) | 47902..48357 | - | 456 | WP_004720812.1 | hypothetical protein | VF |
| ND445_RS17685 (ND445_17685) | 48883..49230 | - | 348 | WP_248574997.1 | hypothetical protein | - |
| ND445_RS17690 (ND445_17690) | 49454..49978 | - | 525 | WP_025377230.1 | DNA-binding protein | - |
| ND445_RS17695 (ND445_17695) | 50223..50444 | + | 222 | WP_025377231.1 | helix-turn-helix domain-containing protein | - |
| ND445_RS17700 (ND445_17700) | 50441..52492 | + | 2052 | WP_071666724.1 | Mu transposase C-terminal domain-containing protein | - |
| ND445_RS17705 (ND445_17705) | 52535..53425 | + | 891 | WP_005276797.1 | ATPase | - |
| ND445_RS17710 (ND445_17710) | 53436..53669 | + | 234 | WP_005276801.1 | hypothetical protein | - |
| ND445_RS17715 (ND445_17715) | 53676..53876 | + | 201 | WP_049610289.1 | hypothetical protein | - |
| ND445_RS17720 (ND445_17720) | 53866..54504 | + | 639 | WP_071666725.1 | DUF3164 family protein | - |
| ND445_RS17725 (ND445_17725) | 54506..54697 | + | 192 | WP_025377236.1 | hypothetical protein | - |
| ND445_RS17730 (ND445_17730) | 54781..55494 | + | 714 | WP_071666726.1 | DUF2786 domain-containing protein | - |
| ND445_RS17735 (ND445_17735) | 55494..55961 | + | 468 | WP_071666727.1 | ANR family transcriptional regulator | - |
| ND445_RS17740 (ND445_17740) | 55958..56179 | + | 222 | WP_071666728.1 | hypothetical protein | - |
| ND445_RS17745 (ND445_17745) | 56452..56634 | + | 183 | WP_071666730.1 | hypothetical protein | - |
| ND445_RS17750 (ND445_17750) | 56631..57023 | + | 393 | WP_071666731.1 | hypothetical protein | - |
| ND445_RS17755 (ND445_17755) | 57016..57489 | + | 474 | WP_071666732.1 | hypothetical protein | - |
| ND445_RS17760 (ND445_17760) | 57474..57875 | + | 402 | WP_071666733.1 | regulatory protein GemA | - |
| ND445_RS17765 (ND445_17765) | 57875..58309 | + | 435 | WP_071666734.1 | Mor transcription activator family protein | - |
| ND445_RS17770 (ND445_17770) | 58322..58798 | + | 477 | WP_139238505.1 | hypothetical protein | - |
| ND445_RS17775 (ND445_17775) | 58942..59484 | + | 543 | WP_071666736.1 | glycosyl hydrolase 108 family protein | - |
| ND445_RS17780 (ND445_17780) | 59481..59738 | + | 258 | WP_071666737.1 | hypothetical protein | - |
| ND445_RS17785 (ND445_17785) | 59722..60303 | + | 582 | WP_071666738.1 | hypothetical protein | - |
| ND445_RS17790 (ND445_17790) | 60300..60542 | + | 243 | WP_012303398.1 | hypothetical protein | - |
| ND445_RS17795 (ND445_17795) | 60539..60826 | + | 288 | WP_071666739.1 | hypothetical protein | - |
| ND445_RS17800 (ND445_17800) | 60829..61329 | + | 501 | WP_071666740.1 | DUF1804 family protein | - |
| ND445_RS17805 (ND445_17805) | 61322..61573 | + | 252 | WP_071666741.1 | hypothetical protein | - |
| ND445_RS17810 (ND445_17810) | 61830..63485 | + | 1656 | WP_071666743.1 | phage terminase large subunit | - |
| ND445_RS17815 (ND445_17815) | 63487..65067 | + | 1581 | WP_071666744.1 | DUF935 domain-containing protein | - |
| ND445_RS17820 (ND445_17820) | 65054..66316 | + | 1263 | WP_071666745.1 | phage minor head protein | - |
| ND445_RS17825 (ND445_17825) | 66316..66867 | + | 552 | WP_071666746.1 | phage virion morphogenesis protein | - |
| ND445_RS17830 (ND445_17830) | 67101..68207 | + | 1107 | WP_071666747.1 | phage protease | - |
| ND445_RS17835 (ND445_17835) | 68200..68595 | + | 396 | WP_071666748.1 | hypothetical protein | - |
| ND445_RS17840 (ND445_17840) | 68606..69514 | + | 909 | WP_071666749.1 | Mu-like prophage major head subunit gpT family protein | - |
| ND445_RS17845 (ND445_17845) | 69514..69969 | + | 456 | WP_071666750.1 | HI1506-related protein | - |
| ND445_RS17850 (ND445_17850) | 69981..70409 | + | 429 | WP_071666751.1 | DUF1320 family protein | - |
| ND445_RS17855 (ND445_17855) | 70406..71062 | + | 657 | WP_071666752.1 | DUF1834 family protein | - |
| ND445_RS17860 (ND445_17860) | 71043..71303 | + | 261 | WP_170856011.1 | DUF2635 domain-containing protein | - |
| ND445_RS17865 (ND445_17865) | 71290..72711 | + | 1422 | WP_071666753.1 | phage tail sheath C-terminal domain-containing protein | - |
| ND445_RS17870 (ND445_17870) | 72724..73101 | + | 378 | WP_032898430.1 | hypothetical protein | - |
| ND445_RS17875 (ND445_17875) | 73101..73487 | + | 387 | WP_071666754.1 | hypothetical protein | - |
| ND445_RS17880 (ND445_17880) | 73625..75793 | + | 2169 | WP_071666755.1 | phage tail tape measure protein | - |
| ND445_RS17885 (ND445_17885) | 75790..77106 | + | 1317 | WP_071666756.1 | DNA circularization N-terminal domain-containing protein | - |
| ND445_RS17890 (ND445_17890) | 77090..78304 | + | 1215 | WP_071666757.1 | phage tail protein | - |
| ND445_RS17895 (ND445_17895) | 78294..78944 | + | 651 | WP_071666758.1 | phage baseplate assembly protein V | - |
| ND445_RS17900 (ND445_17900) | 78999..79349 | + | 351 | WP_071666759.1 | phage GP46 family protein | - |
| ND445_RS17905 (ND445_17905) | 79349..80410 | + | 1062 | WP_071666760.1 | baseplate J/gp47 family protein | - |
| ND445_RS17910 (ND445_17910) | 80407..80976 | + | 570 | WP_071666761.1 | DUF2313 domain-containing protein | - |
| ND445_RS17915 (ND445_17915) | 80979..81860 | + | 882 | WP_248594553.1 | tail fiber protein | - |
| ND445_RS17920 (ND445_17920) | 81862..82284 | + | 423 | WP_040155147.1 | tail assembly chaperone | - |
| ND445_RS17925 (ND445_17925) | 82322..82819 | - | 498 | WP_004722849.1 | hypothetical protein | - |
| ND445_RS17930 (ND445_17930) | 83248..83856 | + | 609 | WP_071666813.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| ND445_RS17935 (ND445_17935) | 83926..84999 | - | 1074 | WP_248575003.1 | hypothetical protein | VF |
| ND445_RS17940 (ND445_17940) | 84996..85646 | - | 651 | WP_038251878.1 | hypothetical protein | VF |
| ND445_RS17945 (ND445_17945) | 85646..86131 | - | 486 | WP_004720806.1 | hypothetical protein | VF |
| ND445_RS17950 (ND445_17950) | 86193..86786 | - | 594 | WP_038251880.1 | hypothetical protein | VF |
| ND445_RS17955 (ND445_17955) | 86824..87966 | - | 1143 | WP_238692898.1 | hypothetical protein | VF |
| ND445_RS17960 (ND445_17960) | 87963..89456 | - | 1494 | WP_069971730.1 | hypothetical protein | VF |
| ND445_RS17965 (ND445_17965) | 89460..90047 | - | 588 | WP_049688157.1 | hypothetical protein | VF |
| ND445_RS17970 (ND445_17970) | 90034..91347 | - | 1314 | WP_038251882.1 | type 4b pilus protein PilO2 | - |
| ND445_RS17975 (ND445_17975) | 91351..91899 | - | 549 | WP_162486786.1 | hypothetical protein | - |
| ND445_RS17980 (ND445_17980) | 92079..93701 | - | 1623 | WP_248575002.1 | hypothetical protein | VF |
| ND445_RS17985 (ND445_17985) | 93722..94147 | - | 426 | WP_126940159.1 | type IV pilus biogenesis protein PilM | - |
| ND445_RS17990 (ND445_17990) | 94147..95190 | - | 1044 | WP_162486785.1 | toxin co-regulated pilus biosynthesis Q family protein | - |
| ND445_RS17995 (ND445_17995) | 95268..95468 | - | 201 | WP_004720790.1 | hypothetical protein | - |
| ND445_RS18000 (ND445_18000) | 95531..96232 | - | 702 | WP_004720789.1 | DUF2913 family protein | - |
| ND445_RS18005 (ND445_18005) | 96460..96969 | - | 510 | WP_004720786.1 | transcription termination/antitermination NusG family protein | - |
| ND445_RS18010 (ND445_18010) | 97264..97635 | + | 372 | WP_126940157.1 | helix-turn-helix transcriptional regulator | - |
| ND445_RS18015 (ND445_18015) | 97932..98093 | + | 162 | WP_004720783.1 | hypothetical protein | - |
| ND445_RS18020 (ND445_18020) | 98150..98860 | - | 711 | WP_126940156.1 | PAS domain-containing protein | - |
| ND445_RS18025 (ND445_18025) | 99757..100707 | + | 951 | WP_126940197.1 | Replication protein | - |
| ND445_RS18030 (ND445_18030) | 101738..102103 | - | 366 | Protein_118 | Tn3 family transposase | - |
| ND445_RS18035 (ND445_18035) | 102392..103594 | - | 1203 | WP_126940155.1 | hypothetical protein | - |
| ND445_RS18040 (ND445_18040) | 104063..104653 | + | 591 | WP_126940154.1 | plasmid pRiA4b ORF-3 family protein | - |
| ND445_RS18045 (ND445_18045) | 104785..105357 | + | 573 | WP_126940153.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| ND445_RS18050 (ND445_18050) | 105394..106791 | + | 1398 | WP_126940152.1 | ISKra4 family transposase ISEc51 | Transposase |
| ND445_RS18055 (ND445_18055) | 107227..107308 | + | 82 | Protein_123 | regulator protein FrmR | - |
| ND445_RS18060 (ND445_18060) | 107314..107471 | + | 158 | Protein_124 | IS5/IS1182 family transposase | - |
| ND445_RS18065 (ND445_18065) | 107589..108740 | + | 1152 | WP_126940151.1 | Alcohol dehydrogenase 2 | VF |
| ND445_RS18070 (ND445_18070) | 108969..109244 | + | 276 | WP_126940150.1 | formaldehyde-responsive transcriptional repressor FrmR | - |
| ND445_RS18075 (ND445_18075) | 109279..110388 | + | 1110 | WP_126940149.1 | S-(hydroxymethyl)glutathione dehydrogenase | - |
| ND445_RS18080 (ND445_18080) | 110432..110830 | + | 399 | WP_126940196.1 | VOC family protein | - |
| ND445_RS18085 (ND445_18085) | 110900..111736 | + | 837 | WP_126940195.1 | S-formylglutathione hydrolase | - |
| ND445_RS18090 (ND445_18090) | 111764..112000 | - | 237 | Protein_130 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ND445_RS18095 (ND445_18095) | 112225..112803 | + | 579 | WP_126940193.1 | hypothetical protein | - |
| ND445_RS18100 (ND445_18100) | 112877..113572 | - | 696 | WP_126940189.1 | IS6 family transposase ISEas1 | Transposase |
| ND445_RS18105 (ND445_18105) | 113620..113847 | - | 228 | WP_126940191.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| ND445_RS18110 (ND445_18110) | 114091..114738 | + | 648 | WP_126940190.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ND445_RS18115 (ND445_18115) | 114832..115527 | - | 696 | WP_126940189.1 | IS6 family transposase ISEas1 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|