MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 115590 bp
Accession: NZ_CP098692 Location: 1..115590 Organism: Yersinia ruckeri strain NVI-8524 Replicon: plasmid pYR4
Accession: NZ_CP098692 Location: 1..115590 Organism: Yersinia ruckeri strain NVI-8524 Replicon: plasmid pYR4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND441_RS17440 (ND441_17435) | 321..890 | - | 570 | WP_071666761.1 | DUF2313 domain-containing protein | - |
| ND441_RS17445 (ND441_17440) | 887..1948 | - | 1062 | WP_071666760.1 | baseplate J/gp47 family protein | - |
| ND441_RS17450 (ND441_17445) | 1948..2298 | - | 351 | WP_071666759.1 | phage GP46 family protein | - |
| ND441_RS17455 (ND441_17450) | 2353..3003 | - | 651 | WP_071666758.1 | phage baseplate assembly protein V | - |
| ND441_RS17460 (ND441_17455) | 2993..4207 | - | 1215 | WP_071666757.1 | phage tail protein | - |
| ND441_RS17465 (ND441_17460) | 4191..5507 | - | 1317 | WP_071666756.1 | DNA circularization N-terminal domain-containing protein | - |
| ND441_RS17470 (ND441_17465) | 5504..7672 | - | 2169 | WP_071666755.1 | phage tail tape measure protein | - |
| ND441_RS17475 (ND441_17470) | 7810..8196 | - | 387 | WP_071666754.1 | hypothetical protein | - |
| ND441_RS17480 (ND441_17475) | 8196..8573 | - | 378 | WP_032898430.1 | hypothetical protein | - |
| ND441_RS17485 (ND441_17480) | 8586..10007 | - | 1422 | WP_071666753.1 | phage tail sheath C-terminal domain-containing protein | - |
| ND441_RS17490 (ND441_17485) | 9994..10254 | - | 261 | WP_170856011.1 | DUF2635 domain-containing protein | - |
| ND441_RS17495 (ND441_17490) | 10235..10891 | - | 657 | WP_071666752.1 | DUF1834 family protein | - |
| ND441_RS17500 (ND441_17495) | 10888..11316 | - | 429 | WP_071666751.1 | DUF1320 family protein | - |
| ND441_RS17505 (ND441_17500) | 11328..11783 | - | 456 | WP_071666750.1 | HI1506-related protein | - |
| ND441_RS17510 (ND441_17505) | 11783..12691 | - | 909 | WP_071666749.1 | Mu-like prophage major head subunit gpT family protein | - |
| ND441_RS17515 (ND441_17510) | 12702..13097 | - | 396 | WP_071666748.1 | hypothetical protein | - |
| ND441_RS17520 (ND441_17515) | 13090..14196 | - | 1107 | WP_071666747.1 | phage protease | - |
| ND441_RS17525 (ND441_17520) | 14430..14981 | - | 552 | WP_071666746.1 | phage virion morphogenesis protein | - |
| ND441_RS17530 (ND441_17525) | 14981..16243 | - | 1263 | WP_071666745.1 | phage minor head protein | - |
| ND441_RS17535 (ND441_17530) | 16230..17810 | - | 1581 | WP_071666744.1 | DUF935 domain-containing protein | - |
| ND441_RS17540 (ND441_17535) | 17812..19467 | - | 1656 | WP_071666743.1 | phage terminase large subunit | - |
| ND441_RS17545 (ND441_17540) | 19724..19975 | - | 252 | WP_071666741.1 | hypothetical protein | - |
| ND441_RS17550 (ND441_17545) | 19968..20468 | - | 501 | WP_071666740.1 | DUF1804 family protein | - |
| ND441_RS17555 (ND441_17550) | 20471..20758 | - | 288 | WP_071666739.1 | hypothetical protein | - |
| ND441_RS17560 (ND441_17555) | 20755..20997 | - | 243 | WP_012303398.1 | hypothetical protein | - |
| ND441_RS17565 (ND441_17560) | 20994..21575 | - | 582 | WP_071666738.1 | hypothetical protein | - |
| ND441_RS17570 (ND441_17565) | 21559..21816 | - | 258 | WP_071666737.1 | hypothetical protein | - |
| ND441_RS17575 (ND441_17570) | 21813..22355 | - | 543 | WP_071666736.1 | glycosyl hydrolase 108 family protein | - |
| ND441_RS17580 (ND441_17575) | 22499..22975 | - | 477 | WP_139238505.1 | hypothetical protein | - |
| ND441_RS17585 (ND441_17580) | 22988..23422 | - | 435 | WP_071666734.1 | Mor transcription activator family protein | - |
| ND441_RS17590 (ND441_17585) | 23422..23823 | - | 402 | WP_071666733.1 | regulatory protein GemA | - |
| ND441_RS17595 (ND441_17590) | 23808..24281 | - | 474 | WP_071666732.1 | hypothetical protein | - |
| ND441_RS17600 (ND441_17595) | 24274..24666 | - | 393 | WP_071666731.1 | hypothetical protein | - |
| ND441_RS17605 (ND441_17600) | 24663..24845 | - | 183 | WP_071666730.1 | hypothetical protein | - |
| ND441_RS17610 (ND441_17605) | 25118..25339 | - | 222 | WP_071666728.1 | hypothetical protein | - |
| ND441_RS17615 (ND441_17610) | 25336..25803 | - | 468 | WP_071666727.1 | ANR family transcriptional regulator | - |
| ND441_RS17620 (ND441_17615) | 25803..26516 | - | 714 | WP_071666726.1 | DUF2786 domain-containing protein | - |
| ND441_RS17625 (ND441_17620) | 26600..26791 | - | 192 | WP_025377236.1 | hypothetical protein | - |
| ND441_RS17630 (ND441_17625) | 26793..27431 | - | 639 | WP_071666725.1 | DUF3164 family protein | - |
| ND441_RS17635 (ND441_17630) | 27421..27621 | - | 201 | WP_049610289.1 | hypothetical protein | - |
| ND441_RS17640 (ND441_17635) | 27628..27861 | - | 234 | WP_005276801.1 | hypothetical protein | - |
| ND441_RS17645 (ND441_17640) | 27872..28762 | - | 891 | WP_005276797.1 | ATPase | - |
| ND441_RS17650 (ND441_17645) | 28805..30856 | - | 2052 | WP_071666724.1 | Mu transposase C-terminal domain-containing protein | - |
| ND441_RS17655 (ND441_17650) | 30853..31074 | - | 222 | WP_025377231.1 | helix-turn-helix domain-containing protein | - |
| ND441_RS17660 (ND441_17655) | 31319..31843 | + | 525 | WP_025377230.1 | DNA-binding protein | - |
| ND441_RS17665 (ND441_17660) | 32067..32414 | + | 348 | WP_248574997.1 | hypothetical protein | - |
| ND441_RS17670 (ND441_17665) | 32940..33395 | + | 456 | WP_004720812.1 | hypothetical protein | VF |
| ND441_RS17675 (ND441_17670) | 33392..34180 | + | 789 | WP_038251876.1 | hypothetical protein | VF |
| ND441_RS17680 (ND441_17675) | 34180..35334 | + | 1155 | WP_126940162.1 | Twitching mobility protein | VF |
| ND441_RS17685 (ND441_17680) | 35331..35591 | + | 261 | WP_038251874.1 | IcmT/TraK family protein | - |
| ND441_RS17690 (ND441_17685) | 35607..38960 | + | 3354 | WP_126940163.1 | DUF5710 domain-containing protein | - |
| ND441_RS17695 (ND441_17690) | 38965..39423 | + | 459 | WP_238692899.1 | hypothetical protein | - |
| ND441_RS17700 (ND441_17695) | 39440..40162 | + | 723 | WP_004720818.1 | DotI/IcmL/TraM family protein | - |
| ND441_RS17705 (ND441_17700) | 40181..41176 | + | 996 | WP_162486788.1 | hypothetical protein | VF |
| ND441_RS17710 (ND441_17705) | 41179..42432 | + | 1254 | WP_126940164.1 | conjugal transfer protein TraO | - |
| ND441_RS17715 (ND441_17710) | 42444..43199 | + | 756 | WP_049688151.1 | hypothetical protein | - |
| ND441_RS17720 (ND441_17715) | 43199..43726 | + | 528 | WP_038251868.1 | conjugal transfer protein TraQ | - |
| ND441_RS17725 (ND441_17720) | 43751..44134 | + | 384 | WP_004720828.1 | hypothetical protein | - |
| ND441_RS17730 (ND441_17725) | 44216..45151 | + | 936 | WP_267257527.1 | hypothetical protein | - |
| ND441_RS17735 (ND441_17730) | 45174..48251 | + | 3078 | WP_038251865.1 | conjugal transfer protein | - |
| ND441_RS17740 (ND441_17735) | 48265..49458 | + | 1194 | WP_126940166.1 | conjugal transfer protein TraW | - |
| ND441_RS17745 (ND441_17740) | 49458..50063 | + | 606 | WP_126940167.1 | conjugal transfer protein TraX | - |
| ND441_RS17750 (ND441_17745) | 50130..52271 | + | 2142 | WP_126940168.1 | DotA/TraY family protein | - |
| ND441_RS17755 (ND441_17750) | 52377..52595 | + | 219 | WP_038251862.1 | plasmid stabilization protein | - |
| ND441_RS17760 (ND441_17755) | 52617..53297 | + | 681 | WP_038251860.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| ND441_RS17765 (ND441_17760) | 53393..54676 | + | 1284 | WP_004720838.1 | hypothetical protein | - |
| ND441_RS17770 (ND441_17765) | 54681..55745 | + | 1065 | WP_126940169.1 | DsbC family protein | - |
| ND441_RS17775 (ND441_17770) | 55756..58056 | + | 2301 | WP_126940170.1 | hypothetical protein | VF |
| ND441_RS17780 (ND441_17775) | 58143..58679 | + | 537 | WP_126940171.1 | Phospholipase D | VF |
| ND441_RS17785 (ND441_17780) | 58780..61482 | - | 2703 | WP_126940172.1 | DNA repair protein | - |
| ND441_RS17790 (ND441_17785) | 61862..62911 | - | 1050 | WP_126940173.1 | Abi family protein | - |
| ND441_RS17795 (ND441_17790) | 63208..65133 | - | 1926 | WP_004720847.1 | hypothetical protein | Relaxase |
| ND441_RS17800 (ND441_17795) | 65135..65479 | - | 345 | WP_004720848.1 | plasmid mobilization protein MobA | - |
| ND441_RS17805 (ND441_17800) | 65748..66071 | + | 324 | WP_004720850.1 | hypothetical protein | - |
| ND441_RS17810 (ND441_17805) | 66218..66388 | - | 171 | WP_004720852.1 | DUF5983 family protein | - |
| ND441_RS17815 (ND441_17810) | 66610..67423 | - | 814 | Protein_76 | DUF932 domain-containing protein | - |
| ND441_RS17820 (ND441_17815) | 67911..68207 | - | 297 | WP_004720859.1 | NadS family protein | Antitoxin Detail |
| ND441_RS17825 (ND441_17820) | 68253..68576 | - | 324 | WP_038251855.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ND441_RS17830 (ND441_17825) | 68728..68961 | + | 234 | WP_038251853.1 | hypothetical protein | - |
| ND441_RS17835 (ND441_17830) | 68969..69466 | - | 498 | WP_126940174.1 | hypothetical protein | - |
| ND441_RS17840 (ND441_17835) | 69463..69822 | - | 360 | WP_126940175.1 | DUF3085 domain-containing protein | - |
| ND441_RS17845 (ND441_17840) | 70581..71291 | - | 711 | WP_126940176.1 | N-6 DNA methylase | - |
| ND441_RS17850 (ND441_17845) | 71437..71583 | - | 147 | WP_126940177.1 | succinate dehydrogenase flavoprotein subunit | - |
| ND441_RS17855 (ND441_17850) | 71669..72025 | - | 357 | WP_126940178.1 | hypothetical protein | - |
| ND441_RS17860 (ND441_17855) | 72779..72979 | - | 201 | WP_126940179.1 | hypothetical protein | - |
| ND441_RS17865 (ND441_17860) | 73022..73528 | - | 507 | WP_126940180.1 | antirestriction protein ArdA | - |
| ND441_RS17870 (ND441_17865) | 73920..74699 | - | 780 | WP_126940182.1 | hypothetical protein | - |
| ND441_RS17875 (ND441_17870) | 74981..75451 | - | 471 | WP_126940183.1 | hypothetical protein | - |
| ND441_RS17880 (ND441_17875) | 75790..76191 | - | 402 | WP_162486789.1 | plasmid partitioning/stability family protein | - |
| ND441_RS17885 (ND441_17880) | 76193..77167 | - | 975 | WP_126940201.1 | plasmid segregation protein ParM | - |
| ND441_RS17890 (ND441_17885) | 77471..78124 | + | 654 | WP_126940185.1 | AAA family ATPase | - |
| ND441_RS17895 (ND441_17890) | 78158..78439 | + | 282 | WP_126940186.1 | ribbon-helix-helix domain-containing protein | - |
| ND441_RS17900 (ND441_17895) | 78640..79596 | - | 957 | WP_126940187.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ND441_RS17905 (ND441_17900) | 80120..81043 | + | 924 | WP_126940188.1 | DUF2971 domain-containing protein | - |
| ND441_RS17910 (ND441_17905) | 81132..81299 | - | 168 | Protein_95 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| ND441_RS17915 (ND441_17910) | 81360..82055 | + | 696 | WP_126940192.1 | IS6 family transposase ISEas1 | Transposase |
| ND441_RS17920 (ND441_17915) | 82149..82796 | - | 648 | WP_126940190.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ND441_RS17925 (ND441_17920) | 83040..83267 | + | 228 | WP_126940191.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| ND441_RS17930 (ND441_17925) | 83315..84010 | + | 696 | WP_126940192.1 | IS6 family transposase ISEas1 | Transposase |
| ND441_RS17935 (ND441_17930) | 84084..84662 | - | 579 | WP_126940193.1 | hypothetical protein | - |
| ND441_RS17940 (ND441_17935) | 84887..85123 | + | 237 | Protein_101 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ND441_RS17945 (ND441_17940) | 85151..85987 | - | 837 | WP_126940195.1 | S-formylglutathione hydrolase | - |
| ND441_RS17950 (ND441_17945) | 86057..86455 | - | 399 | WP_126940196.1 | VOC family protein | - |
| ND441_RS17955 (ND441_17950) | 86499..87608 | - | 1110 | WP_126940149.1 | S-(hydroxymethyl)glutathione dehydrogenase | - |
| ND441_RS17960 (ND441_17955) | 87643..87918 | - | 276 | WP_126940150.1 | formaldehyde-responsive transcriptional repressor FrmR | - |
| ND441_RS17965 (ND441_17960) | 88147..89298 | - | 1152 | WP_126940151.1 | Alcohol dehydrogenase 2 | VF |
| ND441_RS17970 (ND441_17965) | 89416..89573 | - | 158 | Protein_107 | IS5/IS1182 family transposase | - |
| ND441_RS17975 (ND441_17970) | 89579..89660 | - | 82 | Protein_108 | regulator protein FrmR | - |
| ND441_RS17980 (ND441_17975) | 90096..91493 | - | 1398 | WP_126940152.1 | ISKra4 family transposase ISEc51 | Transposase |
| ND441_RS17985 (ND441_17980) | 91530..92102 | - | 573 | WP_126940153.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| ND441_RS17990 (ND441_17985) | 92234..92824 | - | 591 | WP_126940154.1 | plasmid pRiA4b ORF-3 family protein | - |
| ND441_RS17995 (ND441_17990) | 93293..94495 | + | 1203 | WP_126940155.1 | hypothetical protein | - |
| ND441_RS18000 (ND441_17995) | 94784..95149 | + | 366 | Protein_113 | Tn3 family transposase | - |
| ND441_RS18005 (ND441_18000) | 96180..97130 | - | 951 | WP_126940197.1 | Replication protein | - |
| ND441_RS18010 (ND441_18005) | 98027..98737 | + | 711 | WP_126940156.1 | PAS domain-containing protein | - |
| ND441_RS18015 (ND441_18010) | 98794..98955 | - | 162 | WP_004720783.1 | hypothetical protein | - |
| ND441_RS18020 (ND441_18015) | 99252..99623 | - | 372 | WP_126940157.1 | helix-turn-helix transcriptional regulator | - |
| ND441_RS18025 (ND441_18020) | 99918..100427 | + | 510 | WP_004720786.1 | transcription termination/antitermination NusG family protein | - |
| ND441_RS18030 (ND441_18025) | 100655..101356 | + | 702 | WP_004720789.1 | DUF2913 family protein | - |
| ND441_RS18035 (ND441_18030) | 101419..101619 | + | 201 | WP_004720790.1 | hypothetical protein | - |
| ND441_RS18040 (ND441_18035) | 101697..102740 | + | 1044 | WP_162486785.1 | toxin co-regulated pilus biosynthesis Q family protein | - |
| ND441_RS18045 (ND441_18040) | 102740..103165 | + | 426 | WP_126940159.1 | type IV pilus biogenesis protein PilM | - |
| ND441_RS18050 (ND441_18045) | 103186..104808 | + | 1623 | WP_248575002.1 | hypothetical protein | VF |
| ND441_RS18055 (ND441_18050) | 104988..105536 | + | 549 | WP_162486786.1 | hypothetical protein | - |
| ND441_RS18060 (ND441_18055) | 105540..106853 | + | 1314 | WP_038251882.1 | type 4b pilus protein PilO2 | - |
| ND441_RS18065 (ND441_18060) | 106840..107427 | + | 588 | WP_049688157.1 | hypothetical protein | VF |
| ND441_RS18070 (ND441_18065) | 107431..108924 | + | 1494 | WP_069971730.1 | hypothetical protein | VF |
| ND441_RS18075 (ND441_18070) | 108921..110063 | + | 1143 | WP_238692898.1 | hypothetical protein | VF |
| ND441_RS18080 (ND441_18075) | 110101..110694 | + | 594 | WP_038251880.1 | hypothetical protein | VF |
| ND441_RS18085 (ND441_18080) | 110756..111241 | + | 486 | WP_004720806.1 | hypothetical protein | VF |
| ND441_RS18090 (ND441_18085) | 111241..111891 | + | 651 | WP_038251878.1 | hypothetical protein | VF |
| ND441_RS18095 (ND441_18090) | 111888..112961 | + | 1074 | WP_248575003.1 | hypothetical protein | VF |
| ND441_RS18100 (ND441_18095) | 113031..113639 | - | 609 | WP_071666813.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| ND441_RS18105 (ND441_18100) | 114068..114565 | + | 498 | WP_004722849.1 | hypothetical protein | - |
| ND441_RS18110 (ND441_18105) | 114603..115025 | - | 423 | WP_038243454.1 | tail assembly chaperone | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|