MGE detailed information
MGE type: Prophage MGE length: 61423 bp
Accession: NZ_CP098203 Location: 2459856..2521278 Organism: Escherichia coli strain Z0117EC0055 Replicon: chromosome
Accession: NZ_CP098203 Location: 2459856..2521278 Organism: Escherichia coli strain Z0117EC0055 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY19_RS11885 (2455753) | 2455753..2456973 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| NBY19_RS11890 (2457098) | 2457098..2457793 | + | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| NBY19_RS11895 (2457746) | 2457746..2459038 | - | 1293 | WP_001296088.1 | voltage-gated ClC-type chloride channel ClcB | - |
| NBY19_RS11900 (2459199) | 2459199..2459813 | - | 615 | WP_000148693.1 | Tat proofreading chaperone DmsD | - |
| NBY19_RS11905 (2459856) | 2459856..2460710 | - | 855 | WP_000526467.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| NBY19_RS11910 (2460712) | 2460712..2461329 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| NBY19_RS11915 (2461340) | 2461340..2462909 | - | 1570 | Protein_2339 | molybdopterin-dependent oxidoreductase | - |
| NBY19_RS11920 (2462970) | 2462970..2465396 | - | 2427 | WP_000041660.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| NBY19_RS11925 (2465595) | 2465595..2465900 | - | 306 | WP_001296085.1 | DUF1161 domain-containing protein | - |
| NBY19_RS11930 (2466008) | 2466008..2466718 | + | 711 | WP_001296084.1 | YnfC family lipoprotein | - |
| NBY19_RS11935 (2466721) | 2466721..2467281 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| NBY19_RS11940 (2467316) | 2467316..2467657 | - | 342 | WP_000705204.1 | DUF1283 family protein | - |
| NBY19_RS11945 (2467792) | 2467792..2468118 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| NBY19_RS11950 (2468324) | 2468324..2469538 | + | 1215 | WP_001296083.1 | starvation-sensing protein RspA | - |
| NBY19_RS11955 (2469550) | 2469550..2470569 | + | 1020 | WP_000836081.1 | Zn-dependent oxidoreductase | - |
| NBY19_RS11960 (2470757) | 2470757..2472037 | - | 1281 | WP_021523105.1 | Putative defective protein IntQ ; Integrase | Integrase |
| NBY19_RS11965 (2472072) | 2472072..2472323 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| NBY19_RS11970 (2472396) | 2472396..2474867 | - | 2472 | WP_000048363.1 | exonuclease | - |
| NBY19_RS11975 (2474961) | 2474961..2475152 | - | 192 | WP_001083276.1 | lysis protein YdfD | - |
| NBY19_RS11980 (2475149) | 2475149..2475337 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| NBY19_RS25080 (2476298) | 2476298..2476399 | - | 102 | Protein_2353 | protein YdfB | - |
| NBY19_RS11990 (2476401) | 2476401..2476556 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| NBY19_RS11995 (2476725) | 2476725..2477132 | - | 408 | WP_000381212.1 | helix-turn-helix domain-containing protein | - |
| NBY19_RS12000 (2477213) | 2477213..2477440 | + | 228 | WP_000921596.1 | Cro/CI family transcriptional regulator | - |
| NBY19_RS12005 (2477424) | 2477424..2477945 | + | 522 | WP_000705355.1 | toxin YdaT family protein | - |
| NBY19_RS12010 (2477926) | 2477926..2478891 | + | 966 | WP_000054487.1 | hypothetical protein | - |
| NBY19_RS12015 (2478932) | 2478932..2479330 | + | 399 | WP_001151242.1 | DUF977 family protein | - |
| NBY19_RS12020 (2479533) | 2479533..2480198 | + | 666 | WP_021523102.1 | epoxyqueuosine reductase QueH | - |
| NBY19_RS12025 (2480407) | 2480407..2481021 | + | 615 | WP_001265627.1 | hypothetical protein | - |
| NBY19_RS12030 (2481024) | 2481024..2482046 | + | 1023 | WP_000915483.1 | DUF4868 domain-containing protein | - |
| NBY19_RS12035 (2482551) | 2482551..2483621 | + | 1071 | Protein_2363 | ISNCY family transposase ISCARN112 | Transposase |
| NBY19_RS12040 (2483694) | 2483694..2483843 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| NBY19_RS12045 (2484280) | 2484280..2484612 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| NBY19_RS12050 (2484815) | 2484815..2485120 | - | 306 | WP_001326990.1 | protein YdfV | - |
| NBY19_RS12055 (2485145) | 2485145..2485384 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| NBY19_RS12060 (2485384) | 2485384..2485671 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| NBY19_RS12065 (2485743) | 2485743..2485898 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| NBY19_RS12070 (2486115) | 2486115..2486366 | + | 252 | WP_000980994.1 | protein Rem | - |
| NBY19_RS12075 (2486433) | 2486433..2486711 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| NBY19_RS12080 (2486713) | 2486713..2487762 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| NBY19_RS12085 (2487776) | 2487776..2488528 | + | 753 | WP_001047135.1 | antitermination protein | - |
| NBY19_RS12090 (2488806) | 2488806..2488895 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| NBY19_RS12095 (2488950) | 2488950..2489162 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| NBY19_RS12100 (2489463) | 2489463..2489678 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| NBY19_RS12105 (2490042) | 2490042..2490212 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| NBY19_RS12110 (2490432) | 2490432..2490647 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| NBY19_RS12115 (2490652) | 2490652..2490963 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| NBY19_RS12120 (2490960) | 2490960..2491493 | + | 534 | WP_001092971.1 | lysozyme | - |
| NBY19_RS12125 (2491490) | 2491490..2491987 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| NBY19_RS12130 (2492350) | 2492350..2492562 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| NBY19_RS12135 (2492573) | 2492573..2492761 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| NBY19_RS12140 (2492764) | 2492764..2492829 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| NBY19_RS12145 (2492834) | 2492834..2493064 | + | 231 | WP_000720962.1 | protein YnfN | - |
| NBY19_RS12150 (2493236) | 2493236..2493409 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| NBY19_RS12155 (2493561) | 2493561..2493971 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| NBY19_RS12160 (2494029) | 2494029..2494262 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| NBY19_RS12165 (2494651) | 2494651..2495196 | + | 546 | WP_000453587.1 | DNA-packaging protein | - |
| NBY19_RS12170 (2495171) | 2495171..2497096 | + | 1926 | WP_001027269.1 | phage terminase large subunit family protein | - |
| NBY19_RS12175 (2497093) | 2497093..2497299 | + | 207 | WP_000198149.1 | gpW family protein | - |
| NBY19_RS12180 (2497296) | 2497296..2498897 | + | 1602 | WP_001356819.1 | phage portal protein | - |
| NBY19_RS12185 (2498878) | 2498878..2500197 | + | 1320 | WP_020233915.1 | S49 family peptidase | - |
| NBY19_RS12190 (2500207) | 2500207..2500539 | + | 333 | WP_001708751.1 | head decoration protein | - |
| NBY19_RS12195 (2500594) | 2500594..2501619 | + | 1026 | WP_000063277.1 | major capsid protein | - |
| NBY19_RS12200 (2501661) | 2501661..2502059 | + | 399 | WP_020233914.1 | DNA-packaging protein FI | - |
| NBY19_RS12205 (2502071) | 2502071..2502424 | + | 354 | WP_000752979.1 | head-tail joining protein | - |
| NBY19_RS12210 (2502436) | 2502436..2503014 | + | 579 | WP_000975070.1 | phage tail protein | - |
| NBY19_RS12215 (2503011) | 2503011..2503406 | + | 396 | WP_000683128.1 | phage minor tail U family protein | - |
| NBY19_RS12220 (2503414) | 2503414..2504154 | + | 741 | WP_001349920.1 | phage tail protein | - |
| NBY19_RS12225 (2504170) | 2504170..2504592 | + | 423 | WP_000479153.1 | phage minor tail protein G | - |
| NBY19_RS12230 (2504574) | 2504574..2505008 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| NBY19_RS12235 (2505001) | 2505001..2507562 | + | 2562 | WP_032153656.1 | phage tail tape measure protein | - |
| NBY19_RS12240 (2507559) | 2507559..2507888 | + | 330 | WP_000847345.1 | phage tail protein | - |
| NBY19_RS12245 (2507888) | 2507888..2508586 | + | 699 | WP_001551186.1 | phage minor tail protein L | - |
| NBY19_RS12250 (2508592) | 2508592..2509335 | + | 744 | WP_032153655.1 | C40 family peptidase | - |
| NBY19_RS12255 (2509272) | 2509272..2509874 | + | 603 | WP_049286672.1 | tail assembly protein | - |
| NBY19_RS12260 (2509935) | 2509935..2513414 | + | 3480 | WP_021523093.1 | host specificity protein J | - |
| NBY19_RS12265 (2513482) | 2513482..2514081 | + | 600 | WP_001542091.1 | Outer membrane protein X | VF |
| NBY19_RS12270 (2514146) | 2514146..2516545 | + | 2400 | WP_032152843.1 | prophage tail fiber N-terminal domain-containing protein | - |
| NBY19_RS12275 (2516542) | 2516542..2516823 | + | 282 | WP_000654154.1 | hypothetical protein | - |
| NBY19_RS12280 (2516833) | 2516833..2517537 | + | 705 | WP_000235967.1 | tail fiber domain-containing protein | - |
| NBY19_RS12285 (2517548) | 2517548..2517841 | + | 294 | WP_000355609.1 | hypothetical protein | - |
| NBY19_RS12290 (2517861) | 2517861..2517971 | + | 111 | Protein_2414 | tail fiber assembly protein | - |
| NBY19_RS12295 (2518069) | 2518069..2518659 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| NBY19_RS12300 (2518976) | 2518976..2519209 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| NBY19_RS12305 (2519278) | 2519278..2519391 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| NBY19_RS12310 (2519995) | 2519995..2521278 | + | 1284 | Protein_2418 | MHS family MFS transporter YdfJ | - |
| NBY19_RS12315 (2521367) | 2521367..2522827 | + | 1461 | WP_000526709.1 | mannitol dehydrogenase family protein | - |
| NBY19_RS12320 (2522863) | 2522863..2523066 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| NBY19_RS12325 (2523243) | 2523243..2523929 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| NBY19_RS12330 (2524018) | 2524018..2524764 | - | 747 | WP_001296081.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|