MGE detailed information
MGE type: Conjugative plasmid MGE length: 124926 bp
Accession: NZ_CP095789 Location: 1..124926 Organism: Escherichia fergusonii strain EF21JD053 Replicon: plasmid pJD053-124K
Accession: NZ_CP095789 Location: 1..124926 Organism: Escherichia fergusonii strain EF21JD053 Replicon: plasmid pJD053-124K
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MYB88_RS23160 (MYB88_23155) | 1..978 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| MYB88_RS23165 (MYB88_23160) | 1263..2003 | - | 741 | WP_001066954.1 | tyrosine-type recombinase/integrase | - |
| MYB88_RS23170 (MYB88_23165) | 2124..2228 | - | 105 | Protein_2 | transcriptional regulator | - |
| MYB88_RS23175 (MYB88_23170) | 2527..3522 | + | 996 | WP_000246635.1 | hypothetical protein | - |
| MYB88_RS23180 (MYB88_23175) | 3526..4458 | + | 933 | WP_000991830.1 | S-4TM family putative pore-forming effector | - |
| MYB88_RS23185 (MYB88_23180) | 4756..5844 | + | 1089 | WP_000952231.1 | hypothetical protein | - |
| MYB88_RS23190 (MYB88_23185) | 5846..6715 | + | 870 | WP_000253407.1 | hypothetical protein | - |
| MYB88_RS23195 (MYB88_23190) | 6772..8337 | - | 1566 | WP_000741348.1 | AAA family ATPase | - |
| MYB88_RS23200 (MYB88_23195) | 8645..8875 | + | 231 | WP_001261287.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| MYB88_RS23205 (MYB88_23200) | 8872..9288 | + | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| MYB88_RS23210 (MYB88_23205) | 9450..11588 | - | 2139 | WP_000350635.1 | AAA family ATPase | - |
| MYB88_RS23215 (MYB88_23210) | 11942..12199 | + | 258 | WP_000343085.1 | hypothetical protein | - |
| MYB88_RS23220 (MYB88_23215) | 12199..12789 | + | 591 | WP_000194575.1 | hypothetical protein | - |
| MYB88_RS23225 (MYB88_23220) | 13052..14608 | + | 1557 | WP_024126035.1 | AAA family ATPase | - |
| MYB88_RS23230 (MYB88_23225) | 14799..15416 | + | 618 | WP_000521603.1 | ProQ/FINO family protein | - |
| MYB88_RS23235 (MYB88_23230) | 15709..16788 | - | 1080 | WP_063117293.1 | permease | - |
| MYB88_RS23240 (MYB88_23235) | 16893..17216 | + | 324 | WP_001175594.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| MYB88_RS23245 (MYB88_23240) | 17377..17697 | + | 321 | Protein_17 | NAD(P)H-dependent oxidoreductase | - |
| MYB88_RS23250 (MYB88_23245) | 17750..18454 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| MYB88_RS23255 (MYB88_23250) | 18520..19863 | + | 1344 | Protein_19 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| MYB88_RS23260 (MYB88_23255) | 19914..20618 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| MYB88_RS23265 (MYB88_23260) | 20684..20968 | + | 285 | Protein_21 | IS6 family transposase IS26 | Transposase |
| MYB88_RS23270 (MYB88_23265) | 21158..21973 | - | 816 | WP_000018321.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| MYB88_RS23275 (MYB88_23270) | 22124..22828 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| MYB88_RS23280 (MYB88_23275) | 22875..22943 | + | 69 | Protein_24 | macrolide transporter | - |
| MYB88_RS23285 (MYB88_23280) | 23089..23952 | + | 864 | WP_000612791.1 | SDR family oxidoreductase | - |
| MYB88_RS23290 (MYB88_23285) | 23990..24235 | + | 246 | WP_001354008.1 | GrpB family protein | - |
| MYB88_RS23295 (MYB88_23290) | 24704..25495 | + | 792 | WP_000034420.1 | Dihydropteroate synthase | ARG |
| MYB88_RS23300 (MYB88_23295) | 25498..25773 | - | 276 | WP_109023896.1 | hypothetical protein | - |
| MYB88_RS23305 (MYB88_23300) | 25796..26428 | + | 633 | WP_020802982.1 | IS256 family transposase IS406 | Transposase |
| MYB88_RS23310 (MYB88_23305) | 26659..27267 | - | 609 | WP_000050382.1 | HAD family hydrolase | - |
| MYB88_RS23315 (MYB88_23310) | 27363..28205 | - | 843 | WP_001456218.1 | alpha/beta fold putative hydrolase EstX | - |
| MYB88_RS23320 (MYB88_23315) | 28372..29385 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| MYB88_RS23325 (MYB88_23320) | 29588..29938 | + | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| MYB88_RS23330 (MYB88_23325) | 30064..30495 | + | 432 | Protein_34 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| MYB88_RS23335 (MYB88_23330) | 30548..31252 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| MYB88_RS23340 (MYB88_23335) | 31322..31795 | - | 474 | WP_004201280.1 | Dihydrofolate reductase type 1 | ARG |
| MYB88_RS23345 (MYB88_23340) | 31951..32835 | + | 885 | Protein_37 | IS91 family transposase ISAzo26 | Transposase |
| MYB88_RS23350 (MYB88_23345) | 32897..33601 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| MYB88_RS23355 (MYB88_23350) | 33607..33747 | + | 141 | WP_001044210.1 | hypothetical protein | - |
| MYB88_RS23360 (MYB88_23355) | 34233..34970 | + | 738 | WP_001366550.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| MYB88_RS23365 (MYB88_23360) | 34967..35191 | + | 225 | WP_000743213.1 | hypothetical protein | - |
| MYB88_RS23370 (MYB88_23365) | 35402..36895 | + | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| MYB88_RS23375 (MYB88_23370) | 36926..37810 | + | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| MYB88_RS23380 (MYB88_23375) | 38027..39241 | + | 1215 | WP_000214121.1 | Bicyclomycin resistance protein | ARG |
| MYB88_RS23385 (MYB88_23380) | 39269..39574 | + | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| MYB88_RS23390 (MYB88_23385) | 39686..39874 | + | 189 | Protein_46 | IS91 family transposase | - |
| MYB88_RS23395 (MYB88_23390) | 39841..41040 | - | 1200 | WP_032153701.1 | Tetracycline resistance protein, class C | ARG |
| MYB88_RS23400 (MYB88_23395) | 41146..41796 | + | 651 | WP_001493764.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| MYB88_RS23405 (MYB88_23400) | 41828..42070 | - | 243 | WP_000844627.1 | transposase | - |
| MYB88_RS23410 (MYB88_23405) | 42376..43212 | - | 837 | WP_049195390.1 | hypothetical protein | ARG |
| MYB88_RS23415 (MYB88_23410) | 43212..44015 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| MYB88_RS23420 (MYB88_23415) | 44076..44891 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| MYB88_RS23425 (MYB88_23420) | 45053..45913 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| MYB88_RS23430 (MYB88_23425) | 46096..46653 | - | 558 | WP_001217881.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| MYB88_RS23435 (MYB88_23430) | 46817..47071 | + | 255 | WP_138642492.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| MYB88_RS23440 (MYB88_23435) | 47105..47809 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| MYB88_RS23445 (MYB88_23440) | 47846..48973 | - | 1128 | WP_014837927.1 | DUF3883 domain-containing protein | - |
| MYB88_RS23450 (MYB88_23445) | 49024..49251 | - | 228 | WP_000248278.1 | hypothetical protein | - |
| MYB88_RS23455 (MYB88_23450) | 49275..49466 | + | 192 | WP_000951934.1 | hypothetical protein | - |
| MYB88_RS23460 (MYB88_23455) | 49948..50205 | - | 258 | Protein_60 | tunicamycin resistance protein | - |
| MYB88_RS23465 (MYB88_23460) | 50268..50972 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| MYB88_RS23470 (MYB88_23465) | 51029..51901 | - | 873 | Protein_62 | IS4 family transposase IS10R | Transposase |
| MYB88_RS23475 (MYB88_23470) | 52011..52973 | - | 963 | Protein_63 | IS4 family transposase IS10R | Transposase |
| MYB88_RS23480 (MYB88_23475) | 53116..53976 | + | 861 | WP_000557454.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| MYB88_RS23485 (MYB88_23480) | 53989..54282 | + | 294 | Protein_65 | tunicamycin resistance protein | - |
| MYB88_RS23490 (MYB88_23485) | 54335..55039 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| MYB88_RS23495 (MYB88_23490) | 55098..58097 | + | 3000 | WP_072834372.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| MYB88_RS23500 (MYB88_23495) | 58131..58220 | - | 90 | Protein_68 | mercuric transporter MerT family protein | - |
| MYB88_RS23505 (MYB88_23500) | 58292..58726 | + | 435 | WP_000429836.1 | IS607 family transposase ISChh1 | Transposase |
| MYB88_RS23510 (MYB88_23505) | 59122..59523 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| MYB88_RS23515 (MYB88_23510) | 59456..59713 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| MYB88_RS23520 (MYB88_23515) | 59806..60459 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| MYB88_RS23525 (MYB88_23520) | 61399..62256 | - | 858 | WP_000130940.1 | incFII family plasmid replication initiator RepA | - |
| MYB88_RS23530 (MYB88_23525) | 62249..62296 | - | 48 | WP_077822033.1 | hypothetical protein | - |
| MYB88_RS23535 (MYB88_23530) | 62287..62523 | + | 237 | WP_223368648.1 | replication protein RepA | - |
| MYB88_RS23540 (MYB88_23535) | 62549..62809 | - | 261 | WP_000083818.1 | replication regulatory protein RepA | - |
| MYB88_RS23545 (MYB88_23540) | 63049..63622 | - | 574 | Protein_77 | DUF2726 domain-containing protein | - |
| MYB88_RS23550 (MYB88_23545) | 63660..63869 | - | 210 | WP_001333231.1 | hemolysin expression modulator Hha | - |
| MYB88_RS23555 (MYB88_23550) | 63915..64376 | - | 462 | WP_001233871.1 | thermonuclease family protein | - |
| MYB88_RS23560 (MYB88_23555) | 64619..64831 | - | 213 | WP_012311405.1 | hypothetical protein | - |
| MYB88_RS23565 (MYB88_23560) | 64969..65529 | - | 561 | WP_000139359.1 | fertility inhibition protein FinO | - |
| MYB88_RS23570 (MYB88_23565) | 65584..66330 | - | 747 | WP_000205777.1 | conjugal transfer pilus acetylase TraX | - |
| MYB88_RS23575 (MYB88_23570) | 66350..71620 | - | 5271 | WP_247859139.1 | Multifunctional conjugation protein TraI | Relaxase |
| MYB88_RS23580 (MYB88_23575) | 71620..73791 | - | 2172 | WP_247859140.1 | type IV conjugative transfer system coupling protein TraD | - |
| MYB88_RS23585 (MYB88_23580) | 74044..74775 | - | 732 | WP_000850424.1 | conjugal transfer complement resistance protein TraT | - |
| MYB88_RS23590 (MYB88_23585) | 74807..75310 | - | 504 | WP_000605510.1 | hypothetical protein | - |
| MYB88_RS23595 (MYB88_23590) | 75325..78147 | - | 2823 | WP_001007026.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| MYB88_RS23600 (MYB88_23595) | 78144..79517 | - | 1374 | WP_001137358.1 | conjugal transfer pilus assembly protein TraH | - |
| MYB88_RS23605 (MYB88_23600) | 79517..79879 | - | 363 | WP_001443292.1 | P-type conjugative transfer protein TrbJ | - |
| MYB88_RS23610 (MYB88_23605) | 79809..80354 | - | 546 | WP_000052618.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| MYB88_RS23615 (MYB88_23610) | 80341..80625 | - | 285 | WP_000624110.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| MYB88_RS23620 (MYB88_23615) | 80744..81091 | - | 348 | WP_072834356.1 | conjugal transfer protein TrbA | - |
| MYB88_RS23625 (MYB88_23620) | 81107..81850 | - | 744 | WP_001030378.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| MYB88_RS23630 (MYB88_23625) | 81843..82100 | - | 258 | WP_000864325.1 | conjugal transfer protein TrbE | - |
| MYB88_RS23635 (MYB88_23630) | 82127..83935 | - | 1809 | WP_000821821.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| MYB88_RS23640 (MYB88_23635) | 83932..84570 | - | 639 | WP_001104248.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| MYB88_RS23645 (MYB88_23640) | 84598..85050 | - | 453 | WP_000069427.1 | hypothetical protein | - |
| MYB88_RS23650 (MYB88_23645) | 85080..85541 | - | 462 | WP_000277845.1 | hypothetical protein | - |
| MYB88_RS23655 (MYB88_23650) | 85567..86559 | - | 993 | WP_000830839.1 | conjugal transfer pilus assembly protein TraU | - |
| MYB88_RS23660 (MYB88_23655) | 86556..87188 | - | 633 | WP_001203745.1 | type-F conjugative transfer system protein TraW | - |
| MYB88_RS23665 (MYB88_23660) | 87185..87571 | - | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| MYB88_RS23670 (MYB88_23665) | 87568..90195 | - | 2628 | WP_001064268.1 | type IV secretion system protein TraC | - |
| MYB88_RS23675 (MYB88_23670) | 90355..90576 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| MYB88_RS23680 (MYB88_23675) | 90711..91226 | - | 516 | WP_000809906.1 | type IV conjugative transfer system lipoprotein TraV | - |
| MYB88_RS23685 (MYB88_23680) | 91223..91474 | - | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| MYB88_RS23690 (MYB88_23685) | 91471..91788 | - | 318 | WP_001057292.1 | conjugal transfer protein TrbD | - |
| MYB88_RS23695 (MYB88_23690) | 91785..92357 | - | 573 | WP_000002780.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| MYB88_RS23700 (MYB88_23695) | 92347..93774 | - | 1428 | WP_000146685.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| MYB88_RS23705 (MYB88_23700) | 93774..94502 | - | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| MYB88_RS23710 (MYB88_23705) | 94489..95055 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| MYB88_RS23715 (MYB88_23710) | 95077..95388 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| MYB88_RS23720 (MYB88_23715) | 95403..95762 | - | 360 | WP_000340272.1 | type IV conjugative transfer system pilin TraA | - |
| MYB88_RS23725 (MYB88_23720) | 95796..96023 | - | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| MYB88_RS23730 (MYB88_23725) | 96117..96803 | - | 687 | WP_000332484.1 | PAS domain-containing protein | - |
| MYB88_RS23735 (MYB88_23730) | 96994..97377 | - | 384 | WP_000124981.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| MYB88_RS23740 (MYB88_23735) | 97654..98301 | + | 648 | WP_000614936.1 | hypothetical protein | VF |
| MYB88_RS23745 (MYB88_23740) | 98598..99419 | - | 822 | WP_001234469.1 | DUF932 domain-containing protein | - |
| MYB88_RS23750 (MYB88_23745) | 99541..99828 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| MYB88_RS23755 (MYB88_23750) | 99853..100059 | - | 207 | WP_000547939.1 | hypothetical protein | - |
| MYB88_RS23760 (MYB88_23755) | 100129..100302 | + | 174 | Protein_120 | hypothetical protein | - |
| MYB88_RS23765 (MYB88_23760) | 101031..102698 | + | 1668 | WP_001762494.1 | group II intron reverse transcriptase/maturase | - |
| MYB88_RS23770 (MYB88_23765) | 102811..102987 | + | 177 | Protein_122 | pilus protein | - |
| MYB88_RS23775 (MYB88_23770) | 103073..103636 | - | 564 | WP_001311069.1 | class I SAM-dependent methyltransferase | - |
| MYB88_RS23780 (MYB88_23775) | 103682..105043 | - | 1362 | WP_000170681.1 | DUF3560 domain-containing protein | - |
| MYB88_RS23785 (MYB88_23780) | 105095..105325 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| MYB88_RS23790 (MYB88_23785) | 105842..106095 | + | 254 | Protein_126 | hypothetical protein | - |
| MYB88_RS23795 (MYB88_23790) | 106319..106501 | - | 183 | WP_001027505.1 | hypothetical protein | - |
| MYB88_RS23800 (MYB88_23795) | 106501..106962 | - | 462 | WP_042007484.1 | DUF1380 family protein | - |
| MYB88_RS23805 (MYB88_23800) | 106962..107387 | - | 426 | WP_001198922.1 | antirestriction protein | - |
| MYB88_RS23810 (MYB88_23805) | 107789..108760 | + | 972 | WP_000082154.1 | IS110 family transposase ISEc32 | Transposase |
| MYB88_RS23820 (MYB88_23815) | 109561..109896 | - | 336 | WP_000343070.1 | hypothetical protein | - |
| MYB88_RS23825 (MYB88_23820) | 109965..110312 | - | 348 | WP_001350917.1 | hypothetical protein | - |
| MYB88_RS23830 (MYB88_23825) | 110309..110478 | - | 170 | Protein_134 | hypothetical protein | - |
| MYB88_RS23835 (MYB88_23830) | 111072..112043 | - | 972 | WP_000817028.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| MYB88_RS23840 (MYB88_23835) | 112043..113209 | - | 1167 | WP_001238646.1 | Sporulation initiation inhibitor protein Soj | VF |
| MYB88_RS23850 (MYB88_23845) | 114894..115319 | - | 426 | WP_012300440.1 | hypothetical protein | - |
| MYB88_RS23855 (MYB88_23850) | 115461..115940 | + | 480 | WP_000190053.1 | hypothetical protein | - |
| MYB88_RS23860 (MYB88_23855) | 116380..116631 | + | 252 | WP_000163248.1 | hypothetical protein | - |
| MYB88_RS23865 (MYB88_23860) | 116604..116735 | - | 132 | Protein_141 | phosphopyruvate hydratase | - |
| MYB88_RS23870 (MYB88_23865) | 117224..118081 | - | 858 | WP_000968140.1 | Manganese transport system membrane protein MntB | ARG |
| MYB88_RS23875 (MYB88_23870) | 118078..118935 | - | 858 | WP_000992806.1 | Manganese transport system membrane protein MntB | ARG |
| MYB88_RS23880 (MYB88_23875) | 118932..119759 | - | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| MYB88_RS23885 (MYB88_23880) | 119759..120673 | - | 915 | WP_000949004.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| MYB88_RS23890 (MYB88_23885) | 121029..121726 | + | 698 | WP_103215986.1 | IS1 family transposase IS1G | Transposase |
| MYB88_RS23895 (MYB88_23890) | 121906..122430 | - | 525 | Protein_147 | DUF4113 domain-containing protein | - |
| MYB88_RS23900 (MYB88_23895) | 122491..122595 | - | 105 | Protein_148 | AAA family ATPase | - |
| MYB88_RS23905 (MYB88_23900) | 122597..122920 | - | 324 | Protein_149 | IS21 family transposase IS21 | Transposase |
| MYB88_RS23910 (MYB88_23905) | 123169..124382 | + | 1214 | WP_085947772.1 | IS3 family transposase ISCfr6 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|