MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 48824 bp
Accession: NZ_CP094943 Location: 3393421..3442244 Organism: Dickeya dadantii strain FZ06 Replicon: chromosome
Accession: NZ_CP094943 Location: 3393421..3442244 Organism: Dickeya dadantii strain FZ06 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MUB29_RS14835 | 3388961..3389617 | - | 657 | WP_263063174.1 | UvrY/SirA/GacA family response regulator transcription factor | - |
| MUB29_RS14840 | 3390268..3390492 | + | 225 | WP_038923309.1 | DUF2594 family protein | - |
| MUB29_RS14850 | 3391229..3392632 | + | 1404 | WP_226054743.1 | D-serine/D-alanine/glycine transporter | - |
| MUB29_RS14855 | 3392708..3392974 | - | 267 | Protein_2916 | LysR family transcriptional regulator | - |
| MUB29_RS14865 | 3393598..3394869 | + | 1272 | WP_263063175.1 | Metalloprotease TldD ; Integrase | Integrase |
| MUB29_RS14870 | 3394983..3395297 | - | 315 | WP_033577753.1 | helix-turn-helix transcriptional regulator | - |
| MUB29_RS14875 | 3395483..3395770 | - | 288 | WP_033577754.1 | helix-turn-helix transcriptional regulator | - |
| MUB29_RS14880 | 3395945..3396217 | + | 273 | WP_012769239.1 | helix-turn-helix transcriptional regulator | - |
| MUB29_RS14885 | 3396415..3396609 | + | 195 | WP_263066052.1 | AlpA family transcriptional regulator | - |
| MUB29_RS14890 | 3396765..3396914 | + | 150 | Protein_2922 | integrase | - |
| MUB29_RS14895 | 3396992..3397303 | - | 312 | WP_263063176.1 | DUF736 domain-containing protein | - |
| MUB29_RS14900 | 3398324..3399250 | + | 927 | WP_171860236.1 | hypothetical protein | - |
| MUB29_RS14905 | 3399498..3399848 | - | 351 | WP_263063177.1 | hypothetical protein | - |
| MUB29_RS14910 | 3399858..3404120 | - | 4263 | WP_263063178.1 | RHS repeat-associated core domain-containing protein | - |
| MUB29_RS14915 | 3404132..3404539 | - | 408 | WP_263063179.1 | DUF1795 domain-containing protein | - |
| MUB29_RS14920 | 3404553..3406406 | - | 1854 | WP_263063180.1 | Biotin carboxylase | VF |
| MUB29_RS14925 | 3406518..3407036 | - | 519 | WP_013318572.1 | putative membrane protein YhdT | VF |
| MUB29_RS14930 | 3407713..3407958 | + | 246 | WP_263063181.1 | helix-turn-helix transcriptional regulator | - |
| MUB29_RS14935 | 3408237..3408524 | - | 288 | WP_263063182.1 | helix-turn-helix transcriptional regulator | - |
| MUB29_RS14940 | 3408658..3408936 | + | 279 | WP_013318581.1 | Ribosomal protein L11 methyltransferase | VF |
| MUB29_RS14945 | 3409050..3409307 | + | 258 | WP_016940998.1 | helix-turn-helix transcriptional regulator | - |
| MUB29_RS14950 | 3409971..3410165 | + | 195 | WP_263063183.1 | AlpA family transcriptional regulator | - |
| MUB29_RS14955 | 3410182..3410766 | + | 585 | WP_263063184.1 | DUF2857 domain-containing protein | - |
| MUB29_RS14960 | 3410756..3410965 | + | 210 | WP_263063185.1 | TraR/DksA family transcriptional regulator | - |
| MUB29_RS14965 | 3411234..3411860 | - | 627 | WP_263063186.1 | hypothetical protein | - |
| MUB29_RS14970 | 3412093..3412410 | - | 318 | WP_263063187.1 | hypothetical protein | - |
| MUB29_RS14975 | 3412397..3412975 | - | 579 | WP_263063188.1 | nucleotidyltransferase | - |
| MUB29_RS14980 | 3413041..3413850 | - | 810 | WP_263063189.1 | pentapeptide repeat-containing protein | - |
| MUB29_RS14985 | 3414445..3414678 | + | 234 | WP_263063190.1 | hypothetical protein | - |
| MUB29_RS14990 | 3414750..3415397 | + | 648 | WP_263063191.1 | hypothetical protein | VF |
| MUB29_RS14995 | 3415417..3415692 | + | 276 | WP_012769221.1 | hypothetical protein | VF |
| MUB29_RS15000 | 3415703..3418450 | + | 2748 | WP_263063192.1 | Putative amino-acid ABC transporter-binding protein YhdW | VF |
| MUB29_RS15005 | 3418475..3419191 | + | 717 | WP_263063193.1 | type IV secretion system protein | - |
| MUB29_RS15010 | 3419202..3419426 | + | 225 | WP_072033842.1 | EexN family lipoprotein | - |
| MUB29_RS15015 | 3419438..3420466 | + | 1029 | WP_263063194.1 | type IV secretion system protein | - |
| MUB29_RS15020 | 3420686..3421369 | + | 684 | WP_263063195.1 | Protein YrdA | VF |
| MUB29_RS15025 | 3421366..3422259 | + | 894 | WP_263063196.1 | P-type conjugative transfer protein VirB9 | - |
| MUB29_RS15030 | 3422256..3423464 | + | 1209 | WP_263063197.1 | Shikimate dehydrogenase (NADP(+)) | VF |
| MUB29_RS15035 | 3423454..3424470 | + | 1017 | WP_171852177.1 | Threonylcarbamoyl-AMP synthase | VF |
| MUB29_RS15040 | 3424511..3424813 | + | 303 | WP_263063198.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| MUB29_RS15045 | 3425578..3427314 | + | 1737 | WP_263066054.1 | type IV secretion system DNA-binding domain-containing protein | - |
| MUB29_RS15050 | 3427323..3428075 | + | 753 | WP_263063199.1 | MobC family replication-relaxation protein | - |
| MUB29_RS15055 | 3428072..3428386 | - | 315 | WP_263063200.1 | CcdB family protein | Toxin Detail |
| MUB29_RS15060 | 3428389..3428625 | - | 237 | WP_263063201.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| MUB29_RS15065 | 3428946..3429890 | - | 945 | WP_263063202.1 | zincin-like metallopeptidase domain-containing protein | - |
| MUB29_RS15070 | 3430534..3431829 | - | 1296 | WP_263063203.1 | hypothetical protein | - |
| MUB29_RS15075 | 3432167..3434545 | + | 2379 | WP_263063204.1 | sensor histidine kinase | - |
| MUB29_RS15080 | 3434546..3436501 | + | 1956 | WP_263063205.1 | hypothetical protein | - |
| MUB29_RS15085 | 3436574..3437413 | - | 840 | WP_263063206.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| MUB29_RS15090 | 3437414..3440737 | - | 3324 | WP_263063207.1 | ATP-binding protein | - |
| MUB29_RS15095 | 3440727..3441665 | - | 939 | WP_263063208.1 | DUF4007 family protein | - |
| MUB29_RS15100 | 3443001..3444148 | + | 1148 | WP_216282535.1 | IS3 family transposase | - |
| MUB29_RS15105 | 3444321..3445337 | + | 1017 | WP_263063209.1 | glycosyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|