MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 74778 bp
Accession: NZ_CP092458 Location: 593101..667878 Organism: Dickeya fangzhongdai strain 643b Replicon: chromosome
Accession: NZ_CP092458 Location: 593101..667878 Organism: Dickeya fangzhongdai strain 643b Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MJO48_RS02680 (MJO48_02680) | 588925..589143 | - | 219 | WP_012773205.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| MJO48_RS02685 (MJO48_02685) | 589202..589945 | - | 744 | WP_239788425.1 | MobC family replication-relaxation protein | - |
| MJO48_RS02690 (MJO48_02690) | 590843..591193 | - | 351 | WP_239788426.1 | hypothetical protein | - |
| MJO48_RS02695 (MJO48_02695) | 591380..591574 | + | 195 | WP_239788427.1 | YlcI/YnfO family protein | - |
| MJO48_RS02700 (MJO48_02700) | 591681..592940 | - | 1260 | WP_239788428.1 | integrase arm-type DNA-binding domain-containing protein | - |
| MJO48_RS02710 (MJO48_02710) | 593206..594087 | + | 882 | WP_239789140.1 | Tyrosine-protein kinase YwqD | VF |
| MJO48_RS02715 (MJO48_02715) | 594311..594736 | - | 426 | WP_239788429.1 | hypothetical protein | - |
| MJO48_RS02720 (MJO48_02720) | 594964..595365 | + | 402 | WP_239788430.1 | hypothetical protein | - |
| MJO48_RS02725 (MJO48_02725) | 595358..596740 | + | 1383 | WP_239788431.1 | SPI-7-type island replicative DNA helicase | - |
| MJO48_RS02730 (MJO48_02730) | 596737..598485 | + | 1749 | WP_239788432.1 | ParB family protein | - |
| MJO48_RS02735 (MJO48_02735) | 598490..598762 | + | 273 | WP_152495356.1 | hypothetical protein | - |
| MJO48_RS02740 (MJO48_02740) | 598765..599376 | + | 612 | WP_024109629.1 | DUF2857 domain-containing protein | - |
| MJO48_RS02745 (MJO48_02745) | 599397..599648 | + | 252 | WP_239788433.1 | hypothetical protein | - |
| MJO48_RS02750 (MJO48_02750) | 599657..599839 | + | 183 | WP_100848834.1 | hypothetical protein | - |
| MJO48_RS02755 (MJO48_02755) | 599963..601183 | + | 1221 | WP_239788434.1 | STY4528 family pathogenicity island replication protein | - |
| MJO48_RS02760 (MJO48_02760) | 601475..602230 | + | 756 | WP_239789141.1 | TIGR03761 family integrating conjugative element protein | - |
| MJO48_RS02765 (MJO48_02765) | 602232..604262 | + | 2031 | WP_239788435.1 | DNA topoisomerase III | - |
| MJO48_RS02770 (MJO48_02770) | 604891..605379 | + | 489 | WP_239788436.1 | STY4534 family ICE replication protein | - |
| MJO48_RS02775 (MJO48_02775) | 605439..605990 | + | 552 | WP_239788437.1 | single-stranded DNA-binding protein | - |
| MJO48_RS02780 (MJO48_02780) | 606089..606379 | + | 291 | WP_239788438.1 | hypothetical protein | - |
| MJO48_RS02785 (MJO48_02785) | 606536..607771 | + | 1236 | WP_239788439.1 | hypothetical protein | VF |
| MJO48_RS02790 (MJO48_02790) | 607773..608216 | + | 444 | WP_239788440.1 | hypothetical protein | VF |
| MJO48_RS02795 (MJO48_02795) | 608236..609909 | + | 1674 | WP_239788441.1 | Outer membrane lipoprotein BfpB | VF |
| MJO48_RS02800 (MJO48_02800) | 609912..611192 | + | 1281 | WP_239788442.1 | hypothetical protein | VF |
| MJO48_RS02805 (MJO48_02805) | 611179..611676 | + | 498 | WP_239788443.1 | hypothetical protein | VF |
| MJO48_RS02810 (MJO48_02810) | 611684..613258 | + | 1575 | WP_239788444.1 | Type II secretion system protein E | VF |
| MJO48_RS02815 (MJO48_02815) | 613248..614363 | + | 1116 | WP_239788445.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| MJO48_RS02820 (MJO48_02820) | 614373..614969 | + | 597 | WP_239788446.1 | hypothetical protein | VF |
| MJO48_RS02825 (MJO48_02825) | 614974..615465 | + | 492 | WP_239788447.1 | hypothetical protein | VF |
| MJO48_RS02830 (MJO48_02830) | 615462..616130 | + | 669 | WP_239788448.1 | hypothetical protein | VF |
| MJO48_RS02835 (MJO48_02835) | 616136..617380 | + | 1245 | WP_239788449.1 | hypothetical protein | VF |
| MJO48_RS02840 (MJO48_02840) | 618003..618821 | + | 819 | WP_239788450.1 | helix-turn-helix transcriptional regulator | - |
| MJO48_RS02845 (MJO48_02845) | 618935..620143 | + | 1209 | WP_239788451.1 | conjugal transfer protein TraF | - |
| MJO48_RS02850 (MJO48_02850) | 620233..620490 | + | 258 | WP_024109651.1 | hypothetical protein | - |
| MJO48_RS02855 (MJO48_02855) | 620500..621531 | + | 1032 | WP_239788452.1 | hypothetical protein | - |
| MJO48_RS02860 (MJO48_02860) | 621848..622177 | + | 330 | WP_239788453.1 | hypothetical protein | - |
| MJO48_RS02865 (MJO48_02865) | 622245..622931 | + | 687 | WP_239788454.1 | DUF2786 domain-containing protein | - |
| MJO48_RS02870 (MJO48_02870) | 623045..623965 | + | 921 | WP_239788455.1 | hypothetical protein | - |
| MJO48_RS02875 (MJO48_02875) | 623976..624698 | + | 723 | WP_239788456.1 | TIGR03759 family integrating conjugative element protein | - |
| MJO48_RS02880 (MJO48_02880) | 624677..625279 | + | 603 | WP_239788457.1 | hypothetical protein | VF |
| MJO48_RS02885 (MJO48_02885) | 625276..625788 | + | 513 | WP_239788458.1 | integrating conjugative element protein | - |
| MJO48_RS02890 (MJO48_02890) | 625830..626375 | + | 546 | WP_239789142.1 | restriction endonuclease | - |
| MJO48_RS02895 (MJO48_02895) | 626372..628471 | + | 2100 | WP_239788459.1 | type IV conjugative transfer system coupling protein TraD | - |
| MJO48_RS02900 (MJO48_02900) | 628455..629213 | + | 759 | WP_239788460.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| MJO48_RS02905 (MJO48_02905) | 629226..629426 | + | 201 | WP_239788461.1 | hypothetical protein | - |
| MJO48_RS02915 (MJO48_02915) | 630947..631795 | - | 849 | WP_239788463.1 | DNA/RNA non-specific endonuclease | - |
| MJO48_RS02920 (MJO48_02920) | 632370..632693 | + | 324 | WP_275592988.1 | RAQPRD family integrative conjugative element protein | - |
| MJO48_RS02925 (MJO48_02925) | 632693..632935 | + | 243 | WP_024109762.1 | TIGR03758 family integrating conjugative element protein | - |
| MJO48_RS02935 (MJO48_02935) | 634264..634566 | + | 303 | WP_225622673.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| MJO48_RS02940 (MJO48_02940) | 634575..634943 | + | 369 | WP_239788464.1 | TIGR03750 family conjugal transfer protein | - |
| MJO48_RS02945 (MJO48_02945) | 634940..635596 | + | 657 | WP_239788465.1 | TIGR03746 family integrating conjugative element protein | - |
| MJO48_RS02950 (MJO48_02950) | 635638..636519 | + | 882 | WP_239789143.1 | TIGR03749 family integrating conjugative element protein | - |
| MJO48_RS02955 (MJO48_02955) | 636509..638056 | + | 1548 | WP_239788466.1 | TIGR03752 family integrating conjugative element protein | - |
| MJO48_RS02960 (MJO48_02960) | 638056..638475 | + | 420 | WP_239788467.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| MJO48_RS02965 (MJO48_02965) | 638475..641318 | + | 2844 | WP_239788468.1 | conjugative transfer ATPase | - |
| MJO48_RS02970 (MJO48_02970) | 641315..641695 | + | 381 | Protein_577 | acetyltransferase | - |
| MJO48_RS02975 (MJO48_02975) | 642012..642788 | + | 777 | WP_239788469.1 | hypothetical protein | - |
| MJO48_RS02980 (MJO48_02980) | 643046..643456 | + | 411 | WP_239788470.1 | TIGR03757 family integrating conjugative element protein | - |
| MJO48_RS02985 (MJO48_02985) | 643492..644424 | + | 933 | WP_239788471.1 | TIGR03756 family integrating conjugative element protein | - |
| MJO48_RS02990 (MJO48_02990) | 644475..645857 | + | 1383 | WP_239789144.1 | integrating conjugative element protein | - |
| MJO48_RS02995 (MJO48_02995) | 645869..646246 | + | 378 | WP_239788472.1 | hypothetical protein | - |
| MJO48_RS03000 (MJO48_03000) | 646243..647787 | + | 1545 | WP_239788473.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| MJO48_RS03005 (MJO48_03005) | 647844..648254 | - | 411 | WP_239788474.1 | hypothetical protein | - |
| MJO48_RS03010 (MJO48_03010) | 648455..648685 | + | 231 | WP_024109781.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| MJO48_RS03015 (MJO48_03015) | 648682..649098 | + | 417 | WP_024109782.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| MJO48_RS03020 (MJO48_03020) | 649435..649698 | + | 264 | WP_239788475.1 | hypothetical protein | - |
| MJO48_RS03025 (MJO48_03025) | 649830..650441 | + | 612 | WP_239788476.1 | DUF2726 domain-containing protein | - |
| MJO48_RS03030 (MJO48_03030) | 651470..652384 | + | 915 | WP_239788477.1 | hypothetical protein ; Integrase | Integrase |
| MJO48_RS03035 (MJO48_03035) | 652450..652749 | - | 300 | WP_239788478.1 | chromosome segregation protein ParM | - |
| MJO48_RS03040 (MJO48_03040) | 653169..653438 | + | 270 | WP_239788479.1 | hypothetical protein | - |
| MJO48_RS03045 (MJO48_03045) | 653519..653851 | + | 333 | WP_239788480.1 | hypothetical protein | - |
| MJO48_RS03050 (MJO48_03050) | 653865..654098 | + | 234 | WP_239788481.1 | hypothetical protein | - |
| MJO48_RS03055 (MJO48_03055) | 654211..654825 | + | 615 | WP_239788482.1 | hypothetical protein | - |
| MJO48_RS03060 (MJO48_03060) | 654841..655320 | + | 480 | WP_239788483.1 | DNA repair protein RadC | - |
| MJO48_RS03065 (MJO48_03065) | 655418..655705 | + | 288 | WP_239788484.1 | TA system toxin CbtA family protein | - |
| MJO48_RS03070 (MJO48_03070) | 655797..656717 | + | 921 | WP_239788485.1 | DUF1281 domain-containing protein | - |
| MJO48_RS03075 (MJO48_03075) | 656726..657043 | + | 318 | WP_239788486.1 | DUF5983 family protein | - |
| MJO48_RS03080 (MJO48_03080) | 657146..657829 | + | 684 | WP_239788487.1 | N-6 DNA methylase | - |
| MJO48_RS03085 (MJO48_03085) | 657993..658382 | - | 390 | WP_239788488.1 | hypothetical protein | - |
| MJO48_RS03090 (MJO48_03090) | 658420..659400 | + | 981 | WP_239788489.1 | hypothetical protein | - |
| MJO48_RS22660 | 659588..659713 | + | 126 | WP_275592989.1 | hypothetical protein | - |
| MJO48_RS03095 (MJO48_03095) | 660021..661049 | + | 1029 | WP_239788490.1 | hypothetical protein | - |
| MJO48_RS03105 (MJO48_03105) | 662253..663011 | - | 759 | WP_239788491.1 | hypothetical protein | - |
| MJO48_RS03110 (MJO48_03110) | 663336..664838 | + | 1503 | WP_239788492.1 | UvrD-helicase domain-containing protein | - |
| MJO48_RS03115 (MJO48_03115) | 664922..666517 | + | 1596 | WP_239788493.1 | TraI domain-containing protein | - |
| MJO48_RS03120 (MJO48_03120) | 666610..667632 | + | 1023 | WP_102801174.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| MJO48_RS03130 (MJO48_03130) | 668067..668642 | - | 576 | WP_038917759.1 | transcriptional regulator | - |
| MJO48_RS03135 (MJO48_03135) | 668737..670467 | - | 1731 | WP_239788494.1 | protein-disulfide reductase DsbD | - |
| MJO48_RS03140 (MJO48_03140) | 670443..670823 | - | 381 | WP_239788495.1 | divalent cation tolerance protein CutA | - |
| MJO48_RS03145 (MJO48_03145) | 670938..672239 | - | 1302 | WP_239788496.1 | anaerobic C4-dicarboxylate transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|