MGE detailed information
MGE type: Prophage MGE length: 65997 bp
Accession: NZ_CP091634 Location: 1982159..2048155 Organism: Salmonella enterica strain 1116 Replicon: chromosome
Accession: NZ_CP091634 Location: 1982159..2048155 Organism: Salmonella enterica strain 1116 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L5505_RS09460 () | 1977896..1978348 | + | 453 | WP_000653693.1 | dihydroneopterin triphosphate diphosphatase | - |
| L5505_RS09465 () | 1978378..1979118 | + | 741 | WP_061380270.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| L5505_RS09470 () | 1979155..1979676 | + | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| L5505_RS09475 () | 1979678..1980277 | - | 600 | WP_000716749.1 | YebB family permuted papain-like enzyme | - |
| L5505_RS09480 () | 1980487..1981179 | + | 693 | WP_058820964.1 | hypothetical protein | - |
| L5505_RS09485 () | 1981539..1982150 | + | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| L5505_RS09490 () | 1982159..1983169 | + | 1011 | WP_000568504.1 | Holliday junction branch migration DNA helicase RuvB | - |
| L5505_RS09495 () | 1983248..1984033 | - | 786 | WP_000571508.1 | hypothetical protein | VF |
| L5505_RS09500 () | 1984030..1984785 | - | 756 | WP_133322679.1 | hypothetical protein | VF |
| L5505_RS09505 () | 1984864..1985808 | + | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| L5505_RS09510 () | 1985824..1987143 | + | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| L5505_RS09515 () | 1987260..1988231 | + | 972 | WP_000448401.1 | hypothetical protein | VF |
| L5505_RS09520 () | 1988304..1989746 | - | 1443 | WP_000091156.1 | pyruvate kinase | - |
| L5505_RS09525 () | 1989870..1990739 | - | 870 | WP_001056719.1 | MurR/RpiR family transcriptional regulator | - |
| L5505_RS09530 () | 1991081..1992556 | + | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| L5505_RS09535 () | 1992791..1994602 | + | 1812 | WP_001069124.1 | phosphogluconate dehydratase | - |
| L5505_RS09540 () | 1994640..1995281 | + | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| L5505_RS09545 () | 1995381..1996559 | - | 1179 | WP_000173428.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| L5505_RS09550 () | 1996690..1996980 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| L5505_RS09555 () | 1997048..1997401 | + | 354 | WP_001042119.1 | protein YebF | - |
| L5505_RS09560 () | 1997495..1998154 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| L5505_RS09565 () | 1998367..2000418 | + | 2052 | WP_000936990.1 | oligopeptidase B | - |
| L5505_RS09570 () | 2000455..2001153 | - | 699 | WP_000944285.1 | exodeoxyribonuclease X | - |
| L5505_RS09575 () | 2001177..2001833 | - | 657 | WP_000100256.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| L5505_RS09580 () | 2001941..2002171 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| L5505_RS09585 () | 2002309..2002683 | + | 375 | WP_000168396.1 | CopC domain-containing protein YobA | - |
| L5505_RS09590 () | 2002684..2003559 | + | 876 | WP_000979699.1 | copper homeostasis membrane protein CopD | - |
| L5505_RS09595 () | 2003576..2003929 | + | 354 | WP_126524015.1 | YebY family protein | - |
| - | 2004031..2004174 | - | 144 | - | - | Antitoxin Detail |
| - | 2004069..2004172 | + | 104 | - | - | Toxin Detail |
| L5505_RS09600 () | 2004303..2004953 | - | 651 | Protein_1875 | hypothetical protein ; Integrase | Integrase |
| L5505_RS09605 () | 2004964..2005269 | + | 306 | WP_206519696.1 | hypothetical protein | - |
| L5505_RS09610 () | 2005226..2005429 | + | 204 | Protein_1877 | phage tail protein | - |
| L5505_RS09615 () | 2005601..2005756 | + | 156 | Protein_1878 | phage tail protein | - |
| L5505_RS09620 () | 2005862..2006194 | + | 333 | WP_061383450.1 | DUF1353 domain-containing protein | - |
| L5505_RS09625 () | 2006243..2006352 | + | 110 | Protein_1880 | tail fiber assembly protein | - |
| L5505_RS09630 () | 2006443..2006628 | - | 186 | WP_012218702.1 | PagK family vesicle-borne virulence factor | - |
| L5505_RS09635 () | 2006880..2007068 | - | 189 | Protein_1882 | tail fiber assembly protein | - |
| L5505_RS09640 () | 2007064..2007834 | - | 771 | WP_000758583.1 | transporter substrate-binding domain-containing protein | - |
| L5505_RS09645 () | 2007904..2008002 | + | 99 | Protein_1884 | DUF4113 domain-containing protein | - |
| L5505_RS09650 () | 2008325..2008453 | + | 129 | Protein_1885 | helix-turn-helix domain-containing protein | - |
| L5505_RS09655 () | 2008482..2009282 | - | 801 | WP_079944157.1 | hypothetical protein | - |
| L5505_RS09660 () | 2010222..2010530 | - | 309 | Protein_1887 | hypothetical protein ; Integrase | Integrase |
| L5505_RS09665 () | 2010529..2010893 | - | 365 | Protein_1888 | recombinase RecT | - |
| L5505_RS09670 () | 2010890..2011000 | + | 111 | Protein_1889 | replication protein | - |
| L5505_RS09675 () | 2011015..2011410 | + | 396 | WP_024798200.1 | DUF977 family protein | - |
| L5505_RS09680 () | 2011697..2012827 | - | 1131 | WP_126524016.1 | GGDEF domain-containing protein | - |
| L5505_RS09685 () | 2013223..2015202 | + | 1980 | WP_133322681.1 | alkyl sulfatase dimerization domain-containing protein | - |
| L5505_RS09690 () | 2015611..2016225 | - | 615 | WP_126524017.1 | disulfide bond formation protein B | - |
| L5505_RS09695 () | 2016235..2016393 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| L5505_RS09700 () | 2016526..2017440 | - | 915 | WP_001233453.1 | DMT family transporter | - |
| L5505_RS09705 () | 2018696..2019109 | - | 414 | WP_080094825.1 | hypothetical protein ; Integrase | Integrase |
| L5505_RS09710 () | 2019233..2020441 | + | 1209 | Protein_1897 | IS256 family transposase ISEc39 | Transposase |
| L5505_RS09715 () | 2020587..2020727 | - | 141 | WP_001576018.1 | hypothetical protein | - |
| L5505_RS09720 () | 2020896..2021162 | - | 267 | WP_077248438.1 | hypothetical protein | - |
| L5505_RS09725 () | 2021532..2021951 | + | 420 | WP_000354410.1 | GNAT family N-acetyltransferase | - |
| L5505_RS09730 () | 2022187..2022345 | - | 159 | WP_072274730.1 | lipopolysaccharide 1,2-N-acetylglucosaminetransferase | - |
| L5505_RS09735 () | 2022369..2022617 | + | 249 | Protein_1902 | glycosyltransferase | - |
| L5505_RS09740 () | 2022662..2023189 | - | 528 | WP_167760988.1 | hypothetical protein | - |
| L5505_RS09745 () | 2024167..2024905 | - | 739 | Protein_1904 | hypothetical protein ; Integrase | Integrase |
| L5505_RS09750 () | 2025024..2026037 | - | 1014 | WP_071991613.1 | acyltransferase family protein | - |
| L5505_RS09755 () | 2026734..2026937 | - | 204 | WP_024798203.1 | hypothetical protein | VF |
| L5505_RS09760 () | 2027121..2027366 | - | 246 | WP_001051755.1 | hypothetical protein | - |
| L5505_RS09765 () | 2028995..2029471 | - | 477 | WP_063809171.1 | hypothetical protein | - |
| L5505_RS09770 () | 2029800..2030195 | - | 396 | WP_063809172.1 | DUF1398 domain-containing protein | - |
| L5505_RS09775 () | 2030967..2031689 | + | 723 | WP_126524018.1 | hypothetical protein | VF |
| L5505_RS09780 () | 2031974..2032138 | + | 165 | WP_001134853.1 | hypothetical protein | - |
| L5505_RS09785 () | 2032362..2033012 | + | 651 | WP_023226864.1 | protein-serine/threonine phosphatase | - |
| L5505_RS09790 () | 2033031..2033222 | - | 192 | WP_000457838.1 | DUF1482 family protein | - |
| L5505_RS09795 () | 2033333..2033569 | - | 237 | WP_024131167.1 | YebV family protein | - |
| L5505_RS09800 () | 2033687..2035126 | - | 1440 | WP_126524019.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L5505_RS09805 () | 2035204..2037837 | - | 2634 | WP_001747692.1 | hypothetical protein | VF |
| L5505_RS09810 () | 2037806..2039089 | - | 1284 | WP_001207293.1 | membrane integrity lipid transport subunit YebS | - |
| L5505_RS09815 () | 2039218..2039715 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| L5505_RS09820 () | 2039813..2040499 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| L5505_RS09825 () | 2040519..2042567 | + | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| L5505_RS09830 () | 2042761..2043642 | + | 882 | WP_000984498.1 | protease HtpX | - |
| L5505_RS09835 () | 2043690..2045063 | - | 1374 | WP_000416139.1 | MFS transporter | - |
| L5505_RS09840 () | 2045240..2046031 | + | 792 | WP_001262197.1 | DNA-binding transcriptional regulator KdgR | - |
| L5505_RS09845 () | 2046243..2046482 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| L5505_RS09850 () | 2046640..2046783 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| L5505_RS09855 () | 2046854..2047141 | + | 288 | WP_001000660.1 | YebO family protein | - |
| L5505_RS09860 () | 2047790..2047933 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| L5505_RS09865 () | 2047946..2048155 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| L5505_RS09870 () | 2048375..2050120 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| L5505_RS09875 () | 2050186..2050995 | + | 810 | WP_000010924.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| L5505_RS09880 () | 2050992..2051558 | - | 567 | WP_126524021.1 | manganese efflux pump MntP | - |
| L5505_RS09885 () | 2051968..2052426 | - | 459 | WP_126524022.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|