MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 89923 bp
Accession: NZ_CP090566 Location: 1..89923 Organism: Xanthomonas citri pv. malvacearum strain CFBP 2036 Replicon: plasmid pCFBP2036-90
Accession: NZ_CP090566 Location: 1..89923 Organism: Xanthomonas citri pv. malvacearum strain CFBP 2036 Replicon: plasmid pCFBP2036-90
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPY96_RS00005 (LPY96_00005) | 1..627 | + | 627 | WP_005918230.1 | Chromosome-partitioning ATPase Soj | VF |
| LPY96_RS00010 (LPY96_00010) | 624..947 | + | 324 | WP_005918229.1 | hypothetical protein | - |
| LPY96_RS00015 (LPY96_00015) | 1092..1406 | + | 315 | WP_005918227.1 | ParC family partition-associated protein | - |
| LPY96_RS00020 (LPY96_00020) | 1654..2901 | + | 1248 | WP_269338333.1 | replication initiation protein | - |
| LPY96_RS00030 (LPY96_00030) | 4492..5717 | + | 1226 | WP_269338335.1 | IS3 family transposase ISJsp1 | Transposase |
| LPY96_RS00035 (LPY96_00035) | 5759..6148 | + | 390 | Protein_6 | TAL effector repeat-containing protein | - |
| LPY96_RS00040 (LPY96_00040) | 6419..10423 | + | 4005 | WP_269338336.1 | type III secretion system effector avirulence protein AvrBs3 | - |
| LPY96_RS00045 (LPY96_00045) | 10549..10734 | + | 186 | WP_033837725.1 | hypothetical protein | - |
| LPY96_RS00050 (LPY96_00050) | 10888..11517 | + | 630 | Protein_9 | AAA family ATPase | - |
| LPY96_RS00055 (LPY96_00055) | 11530..11745 | + | 216 | WP_005918372.1 | plasmid partition protein ParG | - |
| LPY96_RS00060 (LPY96_00060) | 11762..12568 | + | 807 | WP_269338337.1 | hypothetical protein | - |
| LPY96_RS00065 (LPY96_00065) | 12584..12790 | + | 207 | WP_078566330.1 | antitoxin VbhA family protein | - |
| LPY96_RS00070 (LPY96_00070) | 12838..13389 | - | 552 | WP_269338338.1 | Tn3 family transposase ISPsy42 | Transposase |
| LPY96_RS00075 (LPY96_00075) | 13609..14064 | + | 456 | WP_229637923.1 | hypothetical protein | - |
| LPY96_RS00080 (LPY96_00080) | 14085..14393 | + | 309 | WP_005918382.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LPY96_RS00085 (LPY96_00085) | 14438..14671 | + | 234 | WP_154138588.1 | hypothetical protein | - |
| LPY96_RS00090 (LPY96_00090) | 14873..18673 | + | 3801 | WP_089504555.1 | type III secretion system effector avirulence protein AvrBs3 | - |
| LPY96_RS00095 (LPY96_00095) | 18808..19359 | - | 552 | Protein_18 | IS3 family transposase ISXac2 | Transposase |
| LPY96_RS00105 (LPY96_00105) | 20663..21484 | - | 822 | WP_269338339.1 | hypothetical protein | - |
| LPY96_RS00110 (LPY96_00110) | 21995..22384 | - | 390 | WP_003490639.1 | hypothetical protein | - |
| LPY96_RS00115 (LPY96_00115) | 22593..23267 | + | 675 | WP_017113468.1 | NYN domain-containing protein | - |
| LPY96_RS00120 (LPY96_00120) | 23320..23859 | - | 540 | WP_078565982.1 | plasmid pRiA4b ORF-3 family protein | - |
| LPY96_RS00125 (LPY96_00125) | 23907..24188 | - | 282 | Protein_24 | hypothetical protein | - |
| LPY96_RS00135 (LPY96_00135) | 25490..25627 | - | 138 | WP_223304355.1 | hypothetical protein | - |
| LPY96_RS00140 (LPY96_00140) | 25919..26392 | + | 474 | Protein_27 | Avirulence protein AvrBs3 | - |
| LPY96_RS00145 (LPY96_00145) | 26503..29997 | - | 3495 | WP_089504556.1 | type III secretion system effector avirulence protein AvrBs3 | - |
| LPY96_RS00150 (LPY96_00150) | 30541..31362 | + | 822 | WP_269338341.1 | hypothetical protein | - |
| LPY96_RS00155 (LPY96_00155) | 32092..32442 | - | 351 | WP_269338342.1 | hypothetical protein | - |
| LPY96_RS00160 (LPY96_00160) | 32435..33067 | - | 633 | Protein_31 | ParA family protein | - |
| LPY96_RS00165 (LPY96_00165) | 33294..33449 | - | 156 | Protein_32 | cytosine methyltransferase | - |
| LPY96_RS00170 (LPY96_00170) | 33537..33773 | + | 237 | Protein_33 | KfrA protein | - |
| LPY96_RS00175 (LPY96_00175) | 33892..34521 | + | 630 | WP_269338343.1 | ParA family partition ATPase | - |
| LPY96_RS00180 (LPY96_00180) | 34518..34754 | + | 237 | WP_078565910.1 | plasmid partition protein ParG | - |
| LPY96_RS00185 (LPY96_00185) | 35161..35514 | - | 354 | WP_269338344.1 | hypothetical protein | - |
| LPY96_RS00190 (LPY96_00190) | 35563..36270 | - | 708 | WP_005931741.1 | StbB family protein | - |
| LPY96_RS00195 (LPY96_00195) | 36267..36713 | - | 447 | WP_033480397.1 | hypothetical protein | - |
| LPY96_RS00200 (LPY96_00200) | 37063..37458 | + | 396 | WP_269338345.1 | conjugal transfer protein TraA | - |
| LPY96_RS00205 (LPY96_00205) | 37554..37823 | + | 270 | WP_003490597.1 | hypothetical protein | - |
| LPY96_RS00210 (LPY96_00210) | 37820..38113 | + | 294 | WP_269338346.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LPY96_RS00220 (LPY96_00220) | 39594..39794 | + | 201 | Protein_43 | IS3 family transposase IS1389-B | Transposase |
| LPY96_RS00225 (LPY96_00225) | 39856..40790 | + | 935 | Protein_44 | IS3 family transposase ISXc8 | Transposase |
| LPY96_RS00230 (LPY96_00230) | 40830..42057 | - | 1228 | Protein_45 | IS3 family transposase ISMca3 | Transposase |
| LPY96_RS00235 (LPY96_00235) | 42103..42330 | + | 228 | Protein_46 | IS3 family transposase | - |
| LPY96_RS00240 (LPY96_00240) | 42510..46106 | - | 3597 | WP_269338347.1 | type III secretion system effector avirulence protein AvrBs3 | - |
| LPY96_RS00245 (LPY96_00245) | 46323..46943 | + | 621 | WP_269338348.1 | hypothetical protein | - |
| LPY96_RS00250 (LPY96_00250) | 46947..47483 | + | 537 | WP_033482042.1 | hypothetical protein | - |
| LPY96_RS00255 (LPY96_00255) | 47624..49198 | + | 1575 | WP_269338303.1 | type IV secretion system DNA-binding domain-containing protein | - |
| LPY96_RS00260 (LPY96_00260) | 49212..52196 | + | 2985 | Protein_51 | conjugative relaxase | - |
| LPY96_RS00265 (LPY96_00265) | 52486..52770 | + | 285 | WP_003490829.1 | hypothetical protein | - |
| LPY96_RS00270 (LPY96_00270) | 52956..53369 | - | 414 | Protein_53 | hypothetical protein | - |
| LPY96_RS00275 (LPY96_00275) | 53375..53575 | - | 201 | Protein_54 | IS3 family transposase | - |
| LPY96_RS00280 (LPY96_00280) | 53626..54426 | - | 801 | WP_017154874.1 | IS21 family transposase ISRme20 | Transposase |
| LPY96_RS00285 (LPY96_00285) | 54426..55466 | - | 1041 | WP_033474620.1 | IS21 family transposase ISRme20 | Transposase |
| LPY96_RS00290 (LPY96_00290) | 55549..56507 | - | 959 | Protein_57 | IS3 family transposase ISXc8 | Transposase |
| LPY96_RS00295 (LPY96_00295) | 56836..57072 | - | 237 | WP_015463816.1 | plasmid partition protein ParG | - |
| LPY96_RS00300 | 57069..57698 | - | 630 | Protein_59 | AAA family ATPase | - |
| LPY96_RS00305 (LPY96_00310) | 57818..58498 | - | 681 | WP_269338306.1 | DNA-binding protein | - |
| LPY96_RS00310 (LPY96_00315) | 58550..59637 | + | 1088 | WP_269338307.1 | IS3 family transposase ISXac2 | Transposase |
| LPY96_RS00315 (LPY96_00320) | 60034..61089 | - | 1056 | WP_033836455.1 | Tn3 family transposase tnpT_TnXax1 | Transposase |
| LPY96_RS00320 (LPY96_00325) | 61273..62547 | + | 1275 | WP_269338309.1 | Tn3 family transposase tnpS_TnXax1 | Transposase |
| LPY96_RS00325 (LPY96_00330) | 62556..65552 | + | 2997 | WP_078566280.1 | Tn3 family transposase TnpA_TnXax1 | Transposase |
| LPY96_RS00330 (LPY96_00335) | 65600..65947 | - | 348 | Protein_65 | hypothetical protein | - |
| LPY96_RS00340 (LPY96_00345) | 67771..68997 | - | 1227 | WP_269338311.1 | replication protein RepA | - |
| LPY96_RS00345 (LPY96_00350) | 69277..70464 | - | 1188 | WP_269338313.1 | zeta toxin family protein | - |
| LPY96_RS00350 (LPY96_00355) | 70471..70734 | - | 264 | WP_005917846.1 | hypothetical protein | - |
| LPY96_RS00355 (LPY96_00360) | 70759..71160 | - | 402 | WP_011053002.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LPY96_RS00360 (LPY96_00365) | 71157..71417 | - | 261 | WP_005917852.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| LPY96_RS00365 (LPY96_00370) | 71767..75360 | + | 3594 | WP_269338322.1 | type III secretion system effector avirulence protein AvrBs3 | - |
| LPY96_RS00370 (LPY96_00375) | 76141..79224 | + | 3084 | WP_269338324.1 | type III secretion system effector avirulence protein AvrBs3 | - |
| LPY96_RS00375 (LPY96_00380) | 79335..79724 | + | 390 | Protein_74 | avirulence protein | - |
| LPY96_RS00380 (LPY96_00385) | 79857..81134 | - | 1278 | WP_005918469.1 | lytic murein transglycosylase | - |
| LPY96_RS00385 (LPY96_00390) | 81267..82826 | - | 1560 | Protein_76 | Tn3 family transposase TnpA_TnXax1 | Transposase |
| LPY96_RS00390 (LPY96_00395) | 82996..83537 | + | 542 | Protein_77 | IS3 family transposase ISXac2 | Transposase |
| LPY96_RS00395 (LPY96_00400) | 83578..84501 | - | 924 | WP_005934469.1 | Tn3 family transposase TnpR_ISXc4 | Transposase |
| LPY96_RS00400 (LPY96_00405) | 84709..84948 | + | 240 | WP_005934467.1 | ribbon-helix-helix domain-containing protein | - |
| LPY96_RS00405 (LPY96_00410) | 84948..85367 | + | 420 | WP_269338329.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| LPY96_RS00410 (LPY96_00415) | 85372..88347 | + | 2976 | WP_269338331.1 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| LPY96_RS00415 (LPY96_00420) | 88366..89064 | + | 699 | WP_033836401.1 | YecA family protein | - |
| LPY96_RS00420 (LPY96_00425) | 89112..89291 | + | 180 | Protein_83 | transposase | - |
| LPY96_RS00425 (LPY96_00430) | 89359..89475 | + | 117 | Protein_84 | abortive infection family protein | - |
| LPY96_RS00430 (LPY96_00435) | 89618..89755 | - | 138 | WP_005918231.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|