MGE detailed information
MGE type: Prophage MGE length: 62844 bp
Accession: NZ_CP090456 Location: 2370846..2433689 Organism: Escherichia coli strain B379 Replicon: chromosome
Accession: NZ_CP090456 Location: 2370846..2433689 Organism: Escherichia coli strain B379 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ684_RS11350 (2366754) | 2366754..2367449 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| LZ684_RS11355 (2367402) | 2367402..2368694 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| LZ684_RS11365 (2370189) | 2370189..2370803 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| LZ684_RS11370 (2370846) | 2370846..2371700 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| LZ684_RS11375 (2371702) | 2371702..2372319 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| LZ684_RS11380 (2372330) | 2372330..2374753 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| LZ684_RS11385 (2374814) | 2374814..2377240 | - | 2427 | WP_001619485.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| LZ684_RS11390 (2377439) | 2377439..2377744 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| LZ684_RS11395 (2377852) | 2377852..2378562 | + | 711 | WP_072104773.1 | YnfC family lipoprotein | - |
| LZ684_RS11400 (2378565) | 2378565..2379125 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| LZ684_RS11405 (2379160) | 2379160..2379501 | - | 342 | WP_000705197.1 | DUF1283 family protein | - |
| LZ684_RS11410 (2379636) | 2379636..2379962 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| LZ684_RS11415 (2380168) | 2380168..2381382 | + | 1215 | WP_001619484.1 | starvation-sensing protein RspA | - |
| LZ684_RS11420 (2381394) | 2381394..2382413 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| LZ684_RS11425 (2382601) | 2382601..2383881 | - | 1281 | WP_000876958.1 | site-specific integrase | - |
| LZ684_RS11430 (2383916) | 2383916..2384167 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| LZ684_RS11435 (2384240) | 2384240..2386711 | - | 2472 | WP_000048342.1 | exonuclease | - |
| LZ684_RS11440 (2386804) | 2386804..2386995 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| LZ684_RS11445 (2386992) | 2386992..2387180 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| LZ684_RS11450 (2387515) | 2387515..2388495 | + | 981 | WP_000019400.1 | IS5-like element IS5 family transposase | - |
| LZ684_RS11455 (2388947) | 2388947..2389165 | - | 219 | WP_001171942.1 | protein YdfC | - |
| LZ684_RS25050 (2389195) | 2389195..2389323 | - | 129 | WP_000344964.1 | protein YdfB | - |
| LZ684_RS11460 (2389325) | 2389325..2389480 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| LZ684_RS11465 (2389647) | 2389647..2390054 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| LZ684_RS11470 (2390138) | 2390138..2390368 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| LZ684_RS11475 (2390352) | 2390352..2390873 | + | 522 | WP_000705358.1 | toxin YdaT family protein | - |
| LZ684_RS11480 (2390854) | 2390854..2391819 | + | 966 | WP_000054512.1 | hypothetical protein | - |
| LZ684_RS11485 (2391860) | 2391860..2392282 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| LZ684_RS11490 (2392279) | 2392279..2392768 | + | 490 | Protein_2249 | class I SAM-dependent methyltransferase | - |
| LZ684_RS11495 (2393246) | 2393246..2393667 | + | 422 | Protein_2250 | hypothetical protein | - |
| LZ684_RS11500 (2394323) | 2394323..2395345 | + | 1023 | Protein_2251 | ISNCY family transposase | - |
| LZ684_RS11505 (2395466) | 2395466..2395615 | + | 150 | WP_011443592.1 | protein YdfW | - |
| LZ684_RS11510 (2396052) | 2396052..2396384 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| LZ684_RS11515 (2396587) | 2396587..2396892 | - | 306 | WP_001326990.1 | protein YdfV | - |
| LZ684_RS11520 (2396917) | 2396917..2397156 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| LZ684_RS11525 (2397156) | 2397156..2397443 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| LZ684_RS11530 (2397515) | 2397515..2397670 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| LZ684_RS11535 (2397887) | 2397887..2398138 | + | 252 | WP_000980994.1 | protein Rem | - |
| LZ684_RS11540 (2398205) | 2398205..2398483 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| LZ684_RS11545 (2398485) | 2398485..2399534 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| LZ684_RS11550 (2399548) | 2399548..2400300 | + | 753 | WP_001047135.1 | antitermination protein | - |
| LZ684_RS11555 (2400578) | 2400578..2400667 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| LZ684_RS11560 (2400722) | 2400722..2400934 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| LZ684_RS11565 (2401235) | 2401235..2401450 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| LZ684_RS11570 (2401814) | 2401814..2401984 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| LZ684_RS11575 (2402204) | 2402204..2402419 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| LZ684_RS11580 (2402424) | 2402424..2402735 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| LZ684_RS11585 (2402732) | 2402732..2403265 | + | 534 | WP_001092971.1 | lysozyme | - |
| LZ684_RS11590 (2403262) | 2403262..2403759 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| LZ684_RS11595 (2404122) | 2404122..2404334 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| LZ684_RS11600 (2404345) | 2404345..2404533 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| LZ684_RS11605 (2404536) | 2404536..2404601 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| LZ684_RS11610 (2404681) | 2404681..2404836 | + | 156 | WP_001309517.1 | protein YnfN | - |
| LZ684_RS11615 (2405008) | 2405008..2405181 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| LZ684_RS11620 (2405333) | 2405333..2405743 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| LZ684_RS11625 (2405801) | 2405801..2406034 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| LZ684_RS11630 (2406423) | 2406423..2406968 | + | 546 | WP_000453587.1 | DNA-packaging protein | - |
| LZ684_RS11635 (2406943) | 2406943..2408868 | + | 1926 | WP_001619482.1 | phage terminase large subunit family protein | - |
| LZ684_RS11640 (2408865) | 2408865..2409071 | + | 207 | WP_000198153.1 | gpW family protein | - |
| LZ684_RS11645 (2409068) | 2409068..2410669 | + | 1602 | WP_234679120.1 | phage portal protein | - |
| LZ684_RS11650 (2410650) | 2410650..2411969 | + | 1320 | WP_234679121.1 | S49 family peptidase | - |
| LZ684_RS11655 (2411979) | 2411979..2412311 | + | 333 | WP_001358596.1 | head decoration protein | - |
| LZ684_RS11660 (2412367) | 2412367..2413392 | + | 1026 | WP_234679122.1 | major capsid protein | - |
| LZ684_RS11665 (2413434) | 2413434..2413829 | + | 396 | WP_001619480.1 | DNA-packaging protein FI | - |
| LZ684_RS11670 (2413841) | 2413841..2414194 | + | 354 | WP_000752960.1 | head-tail joining protein | - |
| LZ684_RS11675 (2414206) | 2414206..2414784 | + | 579 | WP_000985123.1 | phage tail protein | - |
| LZ684_RS11680 (2414781) | 2414781..2415176 | + | 396 | WP_000683105.1 | phage minor tail U family protein | - |
| LZ684_RS11685 (2415184) | 2415184..2415924 | + | 741 | WP_001619477.1 | phage tail protein | - |
| LZ684_RS11690 (2415940) | 2415940..2416362 | + | 423 | WP_234679123.1 | phage minor tail protein G | - |
| LZ684_RS11695 (2416344) | 2416344..2416778 | + | 435 | WP_000459464.1 | phage tail assembly protein T | - |
| LZ684_RS11700 (2416771) | 2416771..2419332 | + | 2562 | WP_001619474.1 | phage tail tape measure protein | - |
| LZ684_RS11705 (2419329) | 2419329..2419658 | + | 330 | WP_000847345.1 | phage tail protein | - |
| LZ684_RS11710 (2419658) | 2419658..2420356 | + | 699 | WP_001152612.1 | phage minor tail protein L | - |
| LZ684_RS11715 (2420362) | 2420362..2421105 | + | 744 | WP_032149348.1 | C40 family peptidase | - |
| LZ684_RS11720 (2421003) | 2421003..2421650 | + | 648 | WP_033885786.1 | tail assembly protein | - |
| LZ684_RS11725 (2421711) | 2421711..2425190 | + | 3480 | WP_001619471.1 | host specificity protein J | - |
| LZ684_RS11730 (2425259) | 2425259..2425858 | + | 600 | WP_001619470.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| LZ684_RS11735 (2425923) | 2425923..2429030 | + | 3108 | WP_077890157.1 | phage tail protein | - |
| LZ684_RS11740 (2429030) | 2429030..2429605 | + | 576 | WP_000885600.1 | tail fiber assembly protein | - |
| LZ684_RS11745 (2429703) | 2429703..2430293 | - | 591 | WP_000086522.1 | recombinase family protein | - |
| LZ684_RS11755 (2431387) | 2431387..2431620 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| LZ684_RS11760 (2431689) | 2431689..2431802 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| LZ684_RS11765 (2432406) | 2432406..2433689 | + | 1284 | Protein_2304 | MHS family MFS transporter YdfJ | - |
| LZ684_RS11770 (2433778) | 2433778..2435238 | + | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| LZ684_RS11775 (2435273) | 2435273..2435476 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| LZ684_RS11780 (2435653) | 2435653..2436339 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| LZ684_RS11785 (2436428) | 2436428..2437174 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|