MGE detailed information
MGE type: Genomic_island MGE length: 40952 bp
Accession: NZ_CP090399 Location: 2128503..2169454 Organism: Vibrio cholerae strain PanChol Replicon: chromosome
Accession: NZ_CP090399 Location: 2128503..2169454 Organism: Vibrio cholerae strain PanChol Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZM82_RS09645 (LZM82_09645) | 2123767..2128329 | - | 4563 | WP_000702220.1 | accessory colonization factor AcfD | - |
| LZM82_RS09650 (LZM82_09650) | 2128503..2129150 | + | 648 | WP_001173022.1 | accessory colonization factor AcfA | - |
| LZM82_RS09655 (LZM82_09655) | 2129153..2130061 | - | 909 | WP_001880634.1 | M23 family metallopeptidase | - |
| LZM82_RS09660 (LZM82_09660) | 2130070..2130507 | - | 438 | WP_001899524.1 | RDD family protein | - |
| LZM82_RS09665 (LZM82_09665) | 2130559..2131328 | - | 770 | Protein_1880 | accessory colonization factor AcfC | - |
| LZM82_RS09670 (LZM82_09670) | 2131334..2133214 | - | 1881 | WP_000672505.1 | methyl-accepting chemotaxis protein AcfB | - |
| LZM82_RS09675 (LZM82_09675) | 2133221..2133982 | - | 762 | WP_000456980.1 | toxin-coregulated pilus pre-pilin peptidase TcpJ | - |
| LZM82_RS09680 (LZM82_09680) | 2133982..2134812 | - | 831 | WP_000579582.1 | pilus/toxin transcriptional regulator ToxT | - |
| LZM82_RS09685 (LZM82_09685) | 2135019..2136035 | - | 1017 | WP_001269573.1 | colonization factor TcpF | - |
| LZM82_RS09690 (LZM82_09690) | 2136045..2137067 | - | 1023 | WP_000691946.1 | toxin-coregulated pilus assembly protein TcpE | - |
| LZM82_RS09695 (LZM82_09695) | 2137042..2138553 | - | 1512 | WP_000020697.1 | toxin-coregulated pilus assembly ATPase TcpT | - |
| LZM82_RS09700 (LZM82_09700) | 2138543..2139001 | - | 459 | WP_001022338.1 | toxin-coregulated pilus protein TcpS | - |
| LZM82_RS09705 (LZM82_09705) | 2139017..2139853 | - | 837 | WP_001880631.1 | toxin-coregulated pilus protein TcpD | - |
| LZM82_RS09710 (LZM82_09710) | 2139841..2140296 | - | 456 | WP_000200904.1 | toxin-coregulated pilus protein TcpR | - |
| LZM82_RS09715 (LZM82_09715) | 2140289..2141758 | - | 1470 | WP_000750979.1 | toxin-coregulated pilus secretin TcpC | - |
| LZM82_RS09720 (LZM82_09720) | 2141761..2142213 | - | 453 | WP_000742753.1 | toxin-coregulated pilus protein TcpQ | - |
| LZM82_RS09725 (LZM82_09725) | 2142213..2143505 | - | 1293 | WP_001234004.1 | toxin-coregulated pilus minor pilin TcpB | - |
| LZM82_RS09730 (LZM82_09730) | 2143585..2144259 | - | 675 | WP_001176375.1 | toxin-coregulated pilus major pilin TcpA | - |
| LZM82_RS09735 (LZM82_09735) | 2144803..2145213 | - | 411 | WP_000549073.1 | toxin-coregulated pilus protein TcpH | - |
| LZM82_RS09740 (LZM82_09740) | 2145198..2145863 | - | 666 | WP_000542596.1 | toxin-coregulated pilus transcriptional regulator TcpP | - |
| LZM82_RS09745 (LZM82_09745) | 2146305..2148167 | + | 1863 | WP_000591844.1 | toxin-coregulated pilus methyl-accepting chemotaxis protein TcpI | - |
| LZM82_RS09750 (LZM82_09750) | 2148443..2148937 | - | 495 | WP_000218964.1 | thiol peroxidase | - |
| LZM82_RS09755 (LZM82_09755) | 2149047..2149985 | - | 939 | WP_001232137.1 | hypothetical protein | - |
| LZM82_RS09760 (LZM82_09760) | 2149982..2154583 | - | 4602 | WP_000482254.1 | membrane protein | - |
| LZM82_RS09765 (LZM82_09765) | 2154696..2157737 | - | 3042 | WP_001880619.1 | M66 family metalloprotease | - |
| LZM82_RS09770 (LZM82_09770) | 2157917..2159437 | + | 1521 | WP_000640055.1 | aldehyde dehydrogenase family protein | - |
| LZM82_RS09775 (LZM82_09775) | 2159779..2160459 | + | 681 | Protein_1902 | IS5 family transposase | - |
| LZM82_RS09780 (LZM82_09780) | 2160485..2161462 | - | 978 | WP_001889101.1 | IS481-like element ISVch1 family transposase | - |
| LZM82_RS09785 (LZM82_09785) | 2162066..2163427 | + | 1362 | WP_000392003.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| LZM82_RS09790 (LZM82_09790) | 2163424..2163891 | + | 468 | WP_000804849.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| LZM82_RS09795 (LZM82_09795) | 2164319..2164897 | + | 579 | WP_000109982.1 | class I SAM-dependent methyltransferase | - |
| LZM82_RS09800 (LZM82_09800) | 2164901..2167837 | + | 2937 | WP_001283872.1 | DEAD/DEAH box helicase family protein | - |
| LZM82_RS09805 (LZM82_09805) | 2167907..2168611 | + | 705 | WP_001880605.1 | nuclease-related domain-containing protein | - |
| LZM82_RS09810 (LZM82_09810) | 2168945..2169454 | - | 510 | WP_001077909.1 | hypothetical protein | - |
| LZM82_RS09815 (LZM82_09815) | 2169652..2171331 | - | 1680 | WP_001139117.1 | SWIM zinc finger domain-containing protein | - |
| LZM82_RS09820 (LZM82_09820) | 2171554..2172237 | + | 684 | WP_000841479.1 | VC0807 family protein | - |
| LZM82_RS09825 (LZM82_09825) | 2172305..2173921 | - | 1617 | WP_000620446.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|