MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 139412 bp
Accession: NZ_CP089603 Location: 2648763..2788174 Organism: Vibrio furnissii strain VFN3 Replicon: chromosome
Accession: NZ_CP089603 Location: 2648763..2788174 Organism: Vibrio furnissii strain VFN3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LUM42_RS12345 (LUM42_12345) | 2644688..2645215 | + | 528 | WP_041942487.1 | inosine/xanthosine triphosphatase | - |
| LUM42_RS12350 (LUM42_12350) | 2645254..2645547 | - | 294 | WP_004728843.1 | trp operon repressor | - |
| LUM42_RS12355 (LUM42_12355) | 2645602..2647548 | - | 1947 | WP_206981984.1 | murein transglycosylase | - |
| LUM42_RS12360 (LUM42_12360) | 2647806..2649473 | + | 1668 | WP_004728847.1 | energy-dependent translational throttle protein EttA | - |
| LUM42_RS12365 (LUM42_12365) | 2649626..2650003 | + | 378 | WP_232658123.1 | PilZ domain-containing protein | - |
| LUM42_RS12370 (LUM42_12370) | 2650055..2651182 | - | 1128 | WP_014204518.1 | T-protein | VF |
| LUM42_RS12375 (LUM42_12375) | 2651197..2652270 | - | 1074 | WP_004728853.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| LUM42_RS12380 (LUM42_12380) | 2652589..2654265 | + | 1677 | WP_232658124.1 | Sensor histidine kinase BtsS | VF |
| LUM42_RS12385 (LUM42_12385) | 2654265..2654981 | + | 717 | WP_004728857.1 | two-component system response regulator BtsR | - |
| LUM42_RS12390 (LUM42_12390) | 2655053..2656042 | - | 990 | WP_232658125.1 | beta-N-acetylhexosaminidase | - |
| LUM42_RS12395 (LUM42_12395) | 2656179..2657291 | + | 1113 | WP_232658126.1 | anhydro-N-acetylmuramic acid kinase | - |
| LUM42_RS12400 (LUM42_12400) | 2657334..2658266 | + | 933 | WP_004728863.1 | N-acetylmuramic acid 6-phosphate etherase | - |
| LUM42_RS12405 (LUM42_12405) | 2658263..2660074 | - | 1812 | WP_232658127.1 | sodium:proton antiporter | - |
| LUM42_RS12410 (LUM42_12410) | 2660097..2660438 | - | 342 | WP_004728867.1 | DUF2799 domain-containing protein | - |
| LUM42_RS12415 (LUM42_12415) | 2660678..2662162 | + | 1485 | WP_004728870.1 | carbon starvation protein A | - |
| LUM42_RS12420 (LUM42_12420) | 2662277..2663239 | - | 963 | WP_004728872.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| LUM42_RS12425 (LUM42_12425) | 2663273..2663716 | - | 444 | WP_004728873.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| LUM42_RS12430 (LUM42_12430) | 2663898..2664404 | - | 507 | WP_004728875.1 | Lipoprotein signal peptidase | VF |
| LUM42_RS12435 (LUM42_12435) | 2664414..2667260 | - | 2847 | WP_004728878.1 | isoleucine--tRNA ligase | - |
| LUM42_RS12440 (LUM42_12440) | 2667324..2668259 | - | 936 | WP_004728880.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| LUM42_RS12445 (LUM42_12445) | 2668331..2669893 | - | 1563 | WP_004728882.1 | murein biosynthesis integral membrane protein MurJ | - |
| LUM42_RS12450 (LUM42_12450) | 2670152..2670412 | + | 261 | WP_004728884.1 | 30S ribosomal protein S20 | - |
| LUM42_RS12455 (LUM42_12455) | 2670570..2670866 | - | 297 | WP_004728885.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| LUM42_RS12460 (LUM42_12460) | 2671129..2672019 | - | 891 | WP_004728887.1 | Transcriptional activator protein NhaR | VF |
| LUM42_RS12465 (LUM42_12465) | 2672413..2673561 | + | 1149 | WP_004728888.1 | Na/Pi symporter | - |
| LUM42_RS12470 (LUM42_12470) | 2673707..2674558 | - | 852 | WP_004728890.1 | thymidylate synthase | - |
| LUM42_RS12475 (LUM42_12475) | 2674568..2675383 | - | 816 | WP_004728892.1 | prolipoprotein diacylglyceryl transferase | - |
| LUM42_RS12480 (LUM42_12480) | 2675415..2676209 | - | 795 | WP_014204510.1 | sulfite exporter TauE/SafE family protein | - |
| LUM42_RS12485 (LUM42_12485) | 2676219..2678465 | - | 2247 | WP_004728897.1 | phosphoenolpyruvate--protein phosphotransferase | - |
| LUM42_RS12490 (LUM42_12490) | 2678468..2678986 | - | 519 | WP_004728900.1 | RNA pyrophosphohydrolase | - |
| LUM42_RS12495 (LUM42_12495) | 2679605..2680270 | + | 666 | WP_232658128.1 | DNA mismatch repair endonuclease MutH | - |
| LUM42_RS12500 (LUM42_12500) | 2680274..2680585 | - | 312 | WP_038152676.1 | DUF6482 family protein | - |
| LUM42_RS12505 (LUM42_12505) | 2680776..2681810 | + | 1035 | WP_232658129.1 | NADP(H)-dependent aldo-keto reductase | - |
| LUM42_RS12510 (LUM42_12510) | 2681851..2682102 | - | 252 | WP_004728907.1 | hypothetical protein | - |
| LUM42_RS12515 (LUM42_12515) | 2682622..2683956 | - | 1335 | WP_004728911.1 | Transcriptional regulatory protein ZraR | VF |
| LUM42_RS12520 (LUM42_12520) | 2684226..2685758 | - | 1533 | WP_004728914.1 | lysine--tRNA ligase | - |
| LUM42_RS12530 (LUM42_12530) | 2687064..2688377 | - | 1314 | WP_004728918.1 | branched-chain amino acid transport system II carrier protein | - |
| LUM42_RS12535 (LUM42_12535) | 2688684..2689403 | + | 720 | WP_004728920.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| LUM42_RS12540 (LUM42_12540) | 2689495..2690739 | + | 1245 | WP_004728921.1 | ATP-dependent RNA helicase SrmB | - |
| LUM42_RS12545 (LUM42_12545) | 2690847..2692436 | - | 1590 | WP_232658130.1 | Peptide chain release factor RF3 | VF |
| LUM42_RS12550 (LUM42_12550) | 2692693..2693340 | - | 648 | WP_000854920.1 | LexA family transcriptional regulator | - |
| LUM42_RS12555 (LUM42_12555) | 2693458..2693709 | + | 252 | WP_000451746.1 | helix-turn-helix domain-containing protein | - |
| LUM42_RS12560 (LUM42_12560) | 2693765..2694634 | + | 870 | WP_031500537.1 | hypothetical protein | - |
| LUM42_RS12565 (LUM42_12565) | 2694621..2695283 | + | 663 | WP_001158521.1 | DUF6475 domain-containing protein | - |
| LUM42_RS12570 (LUM42_12570) | 2695270..2695818 | + | 549 | WP_000848909.1 | lytic transglycosylase domain-containing protein | - |
| LUM42_RS12575 (LUM42_12575) | 2695815..2696114 | + | 300 | WP_000210563.1 | flagellar transcriptional regulator FlhD | - |
| LUM42_RS12580 (LUM42_12580) | 2696111..2696644 | + | 534 | WP_165564681.1 | FlhC family transcriptional regulator | - |
| LUM42_RS12585 (LUM42_12585) | 2696699..2697130 | + | 432 | WP_040132805.1 | entry exclusion protein EexR | - |
| LUM42_RS12590 (LUM42_12590) | 2697236..2698909 | - | 1674 | WP_028867977.1 | mercury(II) reductase | - |
| LUM42_RS12595 (LUM42_12595) | 2698947..2699354 | - | 408 | WP_196575170.1 | organomercurial transporter MerC | - |
| LUM42_RS12600 (LUM42_12600) | 2699370..2699645 | - | 276 | WP_028867975.1 | mercury resistance system periplasmic binding protein MerP | - |
| LUM42_RS12605 (LUM42_12605) | 2699705..2700052 | - | 348 | WP_028867974.1 | mercuric transporter MerT family protein | - |
| LUM42_RS12610 (LUM42_12610) | 2700137..2700526 | - | 390 | WP_028867973.1 | Hg(II)-responsive transcriptional regulator | - |
| LUM42_RS12615 (LUM42_12615) | 2700624..2704193 | - | 3570 | WP_232658131.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| LUM42_RS12620 (LUM42_12620) | 2704197..2705585 | - | 1389 | WP_232658132.1 | conjugal transfer protein TraH | - |
| LUM42_RS12625 (LUM42_12625) | 2705588..2706532 | - | 945 | WP_232658133.1 | thioredoxin family protein | - |
| LUM42_RS12630 (LUM42_12630) | 2706856..2707482 | - | 627 | WP_232658134.1 | LysE/ArgO family amino acid transporter | - |
| LUM42_RS12635 (LUM42_12635) | 2707484..2708188 | - | 705 | WP_232658135.1 | B3/4 domain-containing protein | - |
| LUM42_RS12640 (LUM42_12640) | 2708234..2708836 | + | 603 | WP_232658136.1 | helix-turn-helix transcriptional regulator | - |
| LUM42_RS12645 (LUM42_12645) | 2708985..2710217 | - | 1233 | WP_232658137.1 | serine/threonine protein kinase | - |
| LUM42_RS12650 (LUM42_12650) | 2710515..2711665 | + | 1151 | WP_222767041.1 | IS3 family transposase ISVpa2 | Transposase |
| LUM42_RS12655 (LUM42_12655) | 2711783..2713174 | + | 1392 | WP_232658138.1 | ABC transporter substrate-binding protein | - |
| LUM42_RS12660 (LUM42_12660) | 2713373..2714080 | - | 708 | WP_100267461.1 | hypothetical protein | - |
| LUM42_RS12665 (LUM42_12665) | 2714170..2715237 | - | 1068 | WP_232658139.1 | primase-helicase zinc-binding domain-containing protein | - |
| LUM42_RS12670 (LUM42_12670) | 2715329..2715670 | - | 342 | WP_048608506.1 | hypothetical protein | - |
| LUM42_RS12675 (LUM42_12675) | 2715670..2716167 | - | 498 | WP_000791199.1 | DNA repair protein RadC | - |
| LUM42_RS12680 (LUM42_12680) | 2716251..2717906 | - | 1656 | WP_222727726.1 | VWA domain-containing protein | - |
| LUM42_RS12685 (LUM42_12685) | 2717976..2718416 | - | 441 | WP_008844800.1 | hypothetical protein | - |
| LUM42_RS12690 (LUM42_12690) | 2718478..2719431 | - | 954 | WP_012368364.1 | DUF3150 domain-containing protein | - |
| LUM42_RS12695 (LUM42_12695) | 2719530..2720297 | - | 768 | WP_025441440.1 | hypothetical protein | - |
| LUM42_RS12700 (LUM42_12700) | 2720297..2721256 | - | 960 | WP_109247983.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| LUM42_RS12705 (LUM42_12705) | 2721466..2722482 | - | 1017 | WP_125891659.1 | YqaJ viral recombinase family protein | - |
| LUM42_RS12710 (LUM42_12710) | 2722543..2722686 | - | 144 | WP_000167275.1 | hypothetical protein | - |
| LUM42_RS12715 (LUM42_12715) | 2722768..2723586 | - | 819 | WP_104975168.1 | phage recombination protein Bet | - |
| LUM42_RS12720 (LUM42_12720) | 2723666..2724085 | - | 420 | WP_012368368.1 | single-stranded DNA-binding protein | - |
| LUM42_RS12725 (LUM42_12725) | 2724101..2724427 | - | 327 | WP_222727734.1 | plasmid-related protein | - |
| LUM42_RS12730 (LUM42_12730) | 2724795..2725397 | + | 603 | WP_001963923.1 | hypothetical protein | - |
| LUM42_RS12735 (LUM42_12735) | 2725498..2727132 | - | 1635 | WP_001963921.1 | BCCT family transporter | - |
| LUM42_RS12740 (LUM42_12740) | 2727323..2728069 | - | 747 | WP_001963920.1 | 3'-5' exonuclease | - |
| LUM42_RS12745 (LUM42_12745) | 2728069..2729949 | - | 1881 | WP_001963917.1 | DUF294 nucleotidyltransferase-like domain-containing protein | - |
| LUM42_RS12750 (LUM42_12750) | 2730037..2731641 | - | 1605 | WP_161803458.1 | putative signaling protein | VF |
| LUM42_RS12755 (LUM42_12755) | 2731676..2732584 | - | 909 | WP_232658140.1 | GGDEF domain-containing protein | - |
| LUM42_RS12760 (LUM42_12760) | 2732663..2732977 | - | 315 | WP_050553753.1 | hypothetical protein | - |
| LUM42_RS12765 (LUM42_12765) | 2732990..2733184 | - | 195 | WP_232658141.1 | hypothetical protein | - |
| LUM42_RS12770 (LUM42_12770) | 2733163..2733501 | - | 339 | WP_232658142.1 | hypothetical protein | - |
| LUM42_RS12775 (LUM42_12775) | 2733660..2737352 | - | 3693 | WP_232658143.1 | conjugal transfer protein TraN | - |
| LUM42_RS12780 (LUM42_12780) | 2737355..2738383 | - | 1029 | WP_161545421.1 | TraU family protein | - |
| LUM42_RS12785 (LUM42_12785) | 2738367..2739491 | - | 1125 | WP_232658848.1 | TrbC family F-type conjugative pilus assembly protein | - |
| LUM42_RS12790 (LUM42_12790) | 2739502..2740014 | - | 513 | WP_232658144.1 | S26 family signal peptidase | - |
| LUM42_RS12795 (LUM42_12795) | 2739998..2740345 | - | 348 | WP_232658145.1 | plasmid-related protein | - |
| LUM42_RS12800 (LUM42_12800) | 2740338..2742737 | - | 2400 | WP_220105803.1 | type IV secretion system protein TraC | - |
| LUM42_RS12805 (LUM42_12805) | 2742737..2743429 | - | 693 | WP_025441428.1 | DsbC family protein | - |
| LUM42_RS12810 (LUM42_12810) | 2743561..2744499 | - | 939 | WP_008844785.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| LUM42_RS12815 (LUM42_12815) | 2744492..2745283 | - | 792 | WP_000095577.1 | type IV toxin-antitoxin system AbiEi family antitoxin | Antitoxin Detail |
| LUM42_RS12820 (LUM42_12820) | 2745504..2745890 | - | 387 | WP_000180225.1 | TraA family conjugative transfer protein | - |
| LUM42_RS12825 (LUM42_12825) | 2745887..2746459 | - | 573 | WP_024008834.1 | type IV conjugative transfer system lipoprotein TraV | - |
| LUM42_RS12830 (LUM42_12830) | 2746534..2747823 | - | 1290 | WP_232658146.1 | TraB/VirB10 family protein | - |
| LUM42_RS12835 (LUM42_12835) | 2747823..2748722 | - | 900 | WP_232658849.1 | type-F conjugative transfer system secretin TraK | - |
| LUM42_RS12840 (LUM42_12840) | 2748706..2749332 | - | 627 | WP_004249355.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| LUM42_RS12845 (LUM42_12845) | 2749329..2749610 | - | 282 | WP_000433889.1 | type IV conjugative transfer system protein TraL | - |
| LUM42_RS12850 (LUM42_12850) | 2749747..2750853 | - | 1107 | WP_232658147.1 | XRE family transcriptional regulator | - |
| LUM42_RS12855 (LUM42_12855) | 2750846..2751442 | - | 597 | WP_134817803.1 | hypothetical protein | - |
| LUM42_RS12860 (LUM42_12860) | 2751556..2752191 | - | 636 | WP_232658148.1 | DUF4400 domain-containing protein | - |
| LUM42_RS12865 (LUM42_12865) | 2752178..2752738 | - | 561 | WP_172782661.1 | conjugative transfer protein | - |
| LUM42_RS12870 (LUM42_12870) | 2752748..2754568 | - | 1821 | WP_232658149.1 | conjugative transfer system coupling protein TraD | - |
| LUM42_RS12875 (LUM42_12875) | 2754616..2756331 | - | 1716 | Protein_2475 | TraI domain-containing protein | - |
| LUM42_RS12880 (LUM42_12880) | 2756413..2757536 | + | 1124 | WP_100269006.1 | IS3 family transposase ISVpa4 | Transposase |
| LUM42_RS12885 (LUM42_12885) | 2757490..2758029 | - | 540 | WP_269785673.1 | TraI domain-containing protein | - |
| LUM42_RS12890 (LUM42_12890) | 2758151..2758966 | - | 816 | WP_063527791.1 | abortive infection family protein | - |
| LUM42_RS12895 (LUM42_12895) | 2759001..2759771 | - | 771 | WP_063527792.1 | hypothetical protein | - |
| LUM42_RS12900 (LUM42_12900) | 2759768..2762935 | - | 3168 | WP_232658150.1 | type I restriction endonuclease subunit R | - |
| LUM42_RS12905 (LUM42_12905) | 2762945..2764153 | - | 1209 | WP_063529636.1 | SIR2 family protein | - |
| LUM42_RS12910 (LUM42_12910) | 2764146..2765495 | - | 1350 | WP_138558351.1 | restriction endonuclease subunit S | - |
| LUM42_RS12915 (LUM42_12915) | 2765485..2767242 | - | 1758 | WP_063527489.1 | class I SAM-dependent DNA methyltransferase | - |
| LUM42_RS12920 (LUM42_12920) | 2767251..2768183 | - | 933 | WP_138558352.1 | WYL domain-containing protein | - |
| LUM42_RS12925 (LUM42_12925) | 2768501..2768800 | - | 300 | WP_232658151.1 | hypothetical protein | - |
| LUM42_RS12930 (LUM42_12930) | 2768874..2769782 | - | 909 | WP_232658152.1 | 3'-5' exonuclease | - |
| LUM42_RS12935 (LUM42_12935) | 2770423..2770872 | + | 450 | WP_005394623.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| LUM42_RS12940 (LUM42_12940) | 2770880..2772148 | + | 1269 | WP_232658153.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| LUM42_RS12945 (LUM42_12945) | 2772159..2772602 | - | 444 | WP_175081107.1 | conjugative transfer protein MobI(A/C) | - |
| LUM42_RS12950 (LUM42_12950) | 2773067..2774041 | + | 975 | WP_055464805.1 | ParM/StbA family protein | - |
| LUM42_RS12955 (LUM42_12955) | 2774044..2774313 | + | 270 | WP_040523228.1 | hypothetical protein | - |
| LUM42_RS12960 (LUM42_12960) | 2774315..2775556 | + | 1242 | WP_055464804.1 | Prophage integrase IntS ; Integrase | Integrase |
| LUM42_RS12965 (LUM42_12965) | 2775568..2775762 | - | 195 | WP_000127614.1 | DNA-binding protein | - |
| LUM42_RS12970 (LUM42_12970) | 2776100..2776327 | + | 228 | WP_055464825.1 | hypothetical protein | - |
| LUM42_RS12975 (LUM42_12975) | 2776767..2778980 | - | 2214 | WP_055464827.1 | ribonuclease R | - |
| LUM42_RS12980 (LUM42_12980) | 2779193..2779402 | - | 210 | WP_055464828.1 | cold-shock protein | - |
| LUM42_RS12985 (LUM42_12985) | 2779625..2779906 | + | 282 | Protein_2497 | integrase | - |
| LUM42_RS12990 (LUM42_12990) | 2779918..2780112 | - | 195 | WP_055464830.1 | hypothetical protein | - |
| LUM42_RS12995 (LUM42_12995) | 2780338..2781552 | - | 1215 | WP_222726806.1 | Serine/threonine-protein kinase toxin HipA | VF |
| LUM42_RS13000 (LUM42_13000) | 2781545..2781856 | - | 312 | WP_222726807.1 | helix-turn-helix transcriptional regulator | - |
| LUM42_RS13005 (LUM42_13005) | 2782922..2784979 | + | 2058 | WP_154180356.1 | putative signaling protein | VF |
| LUM42_RS13010 (LUM42_13010) | 2784985..2785428 | - | 444 | WP_232658154.1 | Ribosomal-protein-alanine acetyltransferase | VF |
| LUM42_RS13015 (LUM42_13015) | 2785425..2785835 | - | 411 | WP_232658155.1 | DNA polymerase III subunit psi | - |
| LUM42_RS13020 (LUM42_13020) | 2786027..2786533 | - | 507 | WP_004728932.1 | N-acetyltransferase | - |
| LUM42_RS13025 (LUM42_13025) | 2786517..2787044 | - | 528 | WP_038152678.1 | SCP2 domain-containing protein | - |
| LUM42_RS13030 (LUM42_13030) | 2787254..2789299 | + | 2046 | WP_232658156.1 | EAL domain-containing protein | - |
| LUM42_RS13035 (LUM42_13035) | 2789407..2790420 | + | 1014 | WP_004728936.1 | peptidase U32 family protein | - |
| LUM42_RS13040 (LUM42_13040) | 2790438..2791316 | + | 879 | WP_232658157.1 | U32 family peptidase | - |
| LUM42_RS13045 (LUM42_13045) | 2791412..2792746 | - | 1335 | WP_232658158.1 | MATE family efflux transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|