MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 82054 bp
Accession: NZ_CP087711 Location: 2834964..2917017 Organism: Plesiomonas shigelloides strain 7A Replicon: chromosome
Accession: NZ_CP087711 Location: 2834964..2917017 Organism: Plesiomonas shigelloides strain 7A Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPH35_RS12520 | 2831735..2832877 | - | 1143 | WP_218573390.1 | divalent metal cation transporter | - |
| LPH35_RS12525 | 2833313..2834278 | + | 966 | WP_230432131.1 | LacI family DNA-binding transcriptional regulator | - |
| LPH35_RS12530 | 2834365..2836143 | + | 1779 | WP_230432132.1 | alpha-glucosidase | - |
| LPH35_RS12535 | 2836190..2837812 | + | 1623 | WP_010861712.1 | PTS transporter subunit IIBC | - |
| LPH35_RS12540 | 2837940..2838800 | + | 861 | WP_207542685.1 | endonuclease/exonuclease/phosphatase family protein | - |
| LPH35_RS12545 | 2839239..2839856 | + | 618 | WP_230432133.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LPH35_RS12550 | 2839863..2840522 | + | 660 | WP_010861709.1 | hypothetical protein | VF |
| LPH35_RS12555 | 2840860..2841633 | + | 774 | WP_010861708.1 | hypothetical protein | VF |
| LPH35_RS12560 | 2841630..2841872 | + | 243 | WP_010861707.1 | heme exporter protein CcmD | - |
| LPH35_RS12565 | 2841875..2842375 | + | 501 | WP_039045286.1 | Cytochrome c-type biogenesis protein CcmE | VF |
| LPH35_RS12570 | 2842372..2844339 | + | 1968 | WP_230432134.1 | Cytochrome c biogenesis protein CcsA | VF |
| LPH35_RS12575 | 2844336..2844947 | + | 612 | WP_082935497.1 | DsbE family thiol:disulfide interchange protein | - |
| LPH35_RS12580 | 2844974..2845510 | + | 537 | WP_177331143.1 | cytochrome c-type biogenesis protein CcmH | - |
| LPH35_RS12585 | 2845510..2846760 | + | 1251 | WP_230433136.1 | c-type cytochrome biogenesis protein CcmI | - |
| LPH35_RS12590 | 2846855..2847556 | - | 702 | WP_230432135.1 | molecular chaperone TorD | - |
| LPH35_RS12595 | 2847698..2850277 | - | 2580 | WP_230432136.1 | trimethylamine-N-oxide reductase TorA | - |
| LPH35_RS12600 | 2850289..2851452 | - | 1164 | WP_230432137.1 | pentaheme c-type cytochrome TorC | - |
| LPH35_RS12605 | 2851589..2852284 | + | 696 | WP_230432138.1 | Regulator of RpoS | VF |
| LPH35_RS12610 | 2852322..2853347 | - | 1026 | WP_230432139.1 | TMAO reductase system periplasmic protein TorT | - |
| LPH35_RS12615 | 2853428..2856289 | + | 2862 | WP_230432140.1 | Sensor histidine kinase RcsC | VF |
| LPH35_RS12620 | 2856311..2857282 | - | 972 | WP_036768467.1 | Tyrosine recombinase XerD | VF |
| LPH35_RS12625 | 2858235..2858327 | - | 93 | Protein_2384 | DUF3265 domain-containing protein | - |
| LPH35_RS12630 | 2858352..2858903 | - | 552 | WP_230432141.1 | hypothetical protein | - |
| LPH35_RS12635 | 2860163..2860699 | - | 537 | WP_230432142.1 | N-acetyltransferase | - |
| LPH35_RS12640 | 2861056..2861604 | - | 549 | WP_230432143.1 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | VF |
| LPH35_RS12645 | 2861934..2862596 | - | 663 | WP_230432144.1 | NAD(P)H-binding protein | - |
| LPH35_RS12650 | 2862900..2863208 | + | 309 | WP_152148551.1 | hypothetical protein | - |
| LPH35_RS12655 | 2863189..2863848 | + | 660 | WP_230432145.1 | site-specific DNA-methyltransferase | - |
| LPH35_RS12660 | 2863979..2864557 | + | 579 | WP_039046291.1 | DJ-1/PfpI family protein | - |
| LPH35_RS12665 | 2864802..2865266 | - | 465 | WP_230432146.1 | ASCH domain-containing protein | - |
| LPH35_RS12670 | 2865592..2866407 | - | 816 | WP_230432147.1 | DUF2971 domain-containing protein | - |
| LPH35_RS12675 | 2867343..2867756 | - | 414 | WP_039046295.1 | hypothetical protein | - |
| LPH35_RS12680 | 2868164..2868712 | - | 549 | WP_152109531.1 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | VF |
| LPH35_RS12685 | 2869141..2869347 | - | 207 | Protein_2396 | HNH endonuclease signature motif containing protein | - |
| LPH35_RS12690 | 2869384..2869818 | - | 435 | WP_230432148.1 | hypothetical protein | - |
| LPH35_RS12695 | 2870258..2870929 | - | 672 | WP_230432149.1 | BrnT family toxin | - |
| LPH35_RS12700 | 2871495..2871932 | - | 438 | WP_219258131.1 | hypothetical protein | - |
| LPH35_RS12705 | 2872456..2872962 | - | 507 | WP_230432150.1 | hypothetical protein | - |
| LPH35_RS12710 | 2873357..2873606 | + | 250 | Protein_2401 | type II toxin-antitoxin system prevent-host-death family antitoxin | - |
| LPH35_RS12715 | 2873599..2873868 | + | 270 | WP_010863491.1 | Txe/YoeB family addiction module toxin | - |
| LPH35_RS12720 | 2874828..2875556 | - | 729 | WP_230432151.1 | hypothetical protein | - |
| LPH35_RS12725 | 2879591..2879974 | - | 384 | WP_230432152.1 | lysozyme inhibitor LprI family protein | - |
| LPH35_RS12730 | 2880424..2881155 | - | 732 | WP_230432153.1 | hypothetical protein | - |
| LPH35_RS12735 | 2881602..2882174 | - | 573 | WP_230432154.1 | hypothetical protein | - |
| LPH35_RS12740 | 2882674..2883078 | - | 405 | WP_082935500.1 | hypothetical protein | - |
| LPH35_RS12745 | 2883071..2883676 | - | 606 | WP_230432155.1 | TIR domain-containing protein | - |
| LPH35_RS12750 | 2884094..2884510 | - | 417 | WP_230432156.1 | VOC family protein | - |
| LPH35_RS12755 | 2884820..2885095 | - | 276 | WP_230432157.1 | hypothetical protein | - |
| LPH35_RS12760 | 2885564..2886325 | - | 762 | WP_230432158.1 | nucleotide-binding protein | - |
| LPH35_RS12765 | 2886706..2887359 | - | 654 | WP_230432159.1 | NAD(P)H-binding protein | - |
| LPH35_RS12770 | 2887753..2888379 | - | 627 | WP_230432160.1 | hypothetical protein | - |
| LPH35_RS12775 | 2888758..2889270 | - | 513 | WP_230432161.1 | hypothetical protein | - |
| LPH35_RS12780 | 2889737..2890441 | - | 705 | WP_230432162.1 | hypothetical protein | - |
| LPH35_RS12785 | 2890892..2891362 | - | 471 | WP_230432163.1 | hypothetical protein | - |
| LPH35_RS12790 | 2891916..2892176 | - | 261 | WP_230432164.1 | hypothetical protein | - |
| LPH35_RS12795 | 2892729..2893103 | - | 375 | WP_230432165.1 | hypothetical protein | - |
| LPH35_RS12800 | 2893507..2893953 | - | 447 | WP_230432166.1 | hypothetical protein | - |
| LPH35_RS12805 | 2894168..2894386 | + | 219 | WP_230432167.1 | hypothetical protein | - |
| LPH35_RS12810 | 2894831..2895463 | - | 633 | WP_230432168.1 | hypothetical protein | - |
| LPH35_RS12815 | 2895830..2896267 | - | 438 | WP_230432169.1 | TIR domain-containing protein | - |
| LPH35_RS12820 | 2896653..2897333 | - | 681 | WP_230432170.1 | hypothetical protein | - |
| LPH35_RS12825 | 2897346..2898440 | - | 1095 | WP_230432171.1 | AAA family ATPase | - |
| LPH35_RS12830 | 2898752..2899414 | - | 663 | WP_230432172.1 | NAD(P)H-binding protein | - |
| LPH35_RS12835 | 2899709..2900509 | - | 801 | WP_230432173.1 | class III extradiol ring-cleavage dioxygenase | - |
| LPH35_RS12840 | 2901038..2901742 | - | 705 | WP_230432174.1 | deaminase | - |
| LPH35_RS12845 | 2903382..2904182 | - | 801 | WP_172534859.1 | class III extradiol ring-cleavage dioxygenase | - |
| LPH35_RS12850 | 2904633..2904965 | + | 333 | WP_036769710.1 | 50S ribosome-binding protein YggL | - |
| LPH35_RS12855 | 2905856..2906770 | - | 915 | WP_230432175.1 | hypothetical protein | - |
| LPH35_RS12860 | 2907180..2907449 | + | 270 | WP_010863417.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| LPH35_RS12865 | 2907446..2907979 | + | 534 | WP_230432176.1 | GNAT family N-acetyltransferase | Toxin Detail |
| LPH35_RS12870 | 2908735..2909196 | + | 462 | WP_178088746.1 | DUF2559 family protein | - |
| LPH35_RS12875 | 2909189..2909791 | + | 603 | WP_230432177.1 | hypothetical protein | VF |
| LPH35_RS12880 | 2910037..2910249 | + | 213 | WP_230432178.1 | hypothetical protein | - |
| LPH35_RS12885 | 2911224..2911913 | + | 690 | WP_230432179.1 | protein N-lysine methyltransferase family protein | - |
| LPH35_RS12890 | 2912258..2913088 | - | 831 | WP_230432180.1 | HNH endonuclease | - |
| LPH35_RS12895 | 2913474..2914001 | - | 528 | WP_230432181.1 | hypothetical protein | - |
| LPH35_RS12900 | 2914081..2914788 | - | 708 | WP_230432182.1 | Sir2 family NAD-dependent protein deacetylase | - |
| LPH35_RS12905 | 2914883..2915170 | + | 288 | WP_230432183.1 | hypothetical protein | - |
| LPH35_RS12910 | 2915372..2915875 | - | 504 | WP_230432185.1 | hypothetical protein | - |
| LPH35_RS12915 | 2916218..2916937 | + | 720 | WP_230432187.1 | hypothetical protein | - |
| LPH35_RS12920 | 2916913..2917557 | + | 645 | WP_230432189.1 | hypothetical protein | - |
| LPH35_RS12925 | 2917863..2918330 | + | 468 | WP_230432190.1 | HIT family protein | - |
| LPH35_RS12930 | 2918719..2919174 | - | 456 | WP_230432192.1 | NAD(P)H-binding protein | - |
| LPH35_RS12935 | 2919527..2920327 | - | 801 | WP_230433137.1 | FRG domain-containing protein | - |
| LPH35_RS12940 | 2920769..2921647 | - | 879 | WP_230432194.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|